EsuBft114_17a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft114_17a-0001
Unique NameEsuBft114_17a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_129contigScaffold_129:994434..998372 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LCI4
ProteomeIdEsuBft114_17
Protein domainsPTHR13253
Protein domainsIPR001763
Ownerapollo_admin@sb-roscoff.fr
Notecentrosomal protein of 41 kda a os:xenopus laevis gn:cep41-a pe:2 sv:1 [Automatic annotation]
Nb exon4
Max annot lvl2759|Eukaryota
Length1825
Hectar predicted targeting categoryother localisation
Evalue1.11e-114
EggNOG OGs28IWM@1|root,2QR8A@2759|Eukaryota
Ec32 ortholog descriptionRhodanese-like domain
Ec32 orthologEc-26_005150.1
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameCEP41
KEGG koko:K16455
GOsGO:0000086,GO:0000226,GO:0000278,GO:0001578,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005814,GO:0005815,GO:0005829,GO:0005856,GO:0005929,GO:0006464,GO:0006807,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007346,GO:0008150,GO:0008152,GO:0009987,GO:0010389,GO:0010564,GO:0015630,GO:0016043,GO:0016874,GO:0016879,GO:0016881,GO:0018095,GO:0018193,GO:0018200,GO:0019538,GO:0022402,GO:0022406,GO:0022607,GO:0030030,GO:0030031,GO:0035082,GO:0036064,GO:0036211,GO:0042995,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044450,GO:0044463,GO:0044464,GO:0044770,GO:0044772,GO:0044782,GO:0044839,GO:0050789,GO:0050794,GO:0051179,GO:0051640,GO:0051641,GO:0051726,GO:0060271,GO:0065007,GO:0070739,GO:0070740,GO:0070925,GO:0071704,GO:0071840,GO:0097711,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:0140056,GO:0140096,GO:1901564,GO:1901987,GO:1901990,GO:1902749,GO:1903047
Descriptionprotein polyglutamylation
COG categoryS
BRITEko00000,ko03036
Cross References
External references for this mRNA
DatabaseAccession
GO0031227
GO0000278
GO0005814
GO0042384
GO0036064
GO0003333
GO0072372
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft114_17aEsuBft114_17aEctocarpus subulatus male Bft15bgeneScaffold_129 994434..998372 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft114_17a-0001EsuBft114_17Ectocarpus subulatus male Bft15bpolypeptideScaffold_129 995128..998372 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft114_17a-0001-exonEsuBft114_17a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_129 994434..995853 -
EsuBft114_17a-0001-exonagat-exon-15598Ectocarpus subulatus male Bft15bexonScaffold_129 996875..996997 -
EsuBft114_17a-0001-exonagat-exon-15597Ectocarpus subulatus male Bft15bexonScaffold_129 997369..997533 -
EsuBft114_17a-0001-exonagat-exon-15599Ectocarpus subulatus male Bft15bexonScaffold_129 998256..998372 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft114_17a-0001-exonagat-three_prime_utr-1431Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_129 994434..995127 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft114_17a-0001-cdsEsuBft114_17a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_129 995128..995853 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft114_17a-0001 ID=EsuBft114_17a-0001|Name=EsuBft114_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1825bp|location=Sequence derived from alignment at Scaffold_129:994434..998372- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGTAGACAAGGTGACCTTCGTCACCACACGGCAGCACCTAAGGCG
GCGGGAGGAACCGTACTTCAGGCTCACGCCGTCCCAACTGAACGAGCTCT
TGAGCGAGTACGAGCAGGACCAACAAGAGGGGGTGCACGACTTCCGAGAC
CACATCGACCCCGACCACCACGGCCCCAAAGTGGTGGAGTACGAGCCCGA
CGCCAAGCCGAGCTACGACCGCCCCTACCTCGTCCTCGACGTCCGCACCC
CCGAGGAGTTCAAGCGGTGCCGCATTGTGCAGGCGCGATCTTTCGAGGCC
AAGCTGCTCAACCAGGACAGAATGACGCCGGAGCTCTACATGTACAAGAA
CCGGGAGGGCGGGCTGGTGATCCTCTACTCGAACGACGATGCCGATGCTT
GCCACGCCGCGAGGACCTTGATTCACAGGGGGTTCGACAACATCTTCGTG
CTCTCCGGCGGTCTGGTCGCCTTCGCGCGAGAGGGTTTCCAAAGCTTCGT
GGAGGGGAACGTCGAGGCCTTGCCGCCGCCACCGCCGGCACCCGCGTCCG
GGGCCGGTACCTTGCGTACTGGCGGCGGGGGGGGCTTGAGAAGTACTGCC
GTATCAGACGGGGTAGGCAGCAGCAGCACCGGCGGCGGCGGCGCCGTTGG
CAGGTTTAGCGGGGCGAGGGGAGGCAGCGAATGCAACGACGGCCGCAGCG
GCGGCGGGGGGAGGCTGGAGTACAGAAACCGCGGGGGTCAGAGAGTGGTA
GTCAGGGGCGGCGGCAGCGATGACATCAACAGCAGCACCAGCAGCACCAG
GAACTCCGCCCTGGGCGGCGGCGGAGGCGGTGGCGTGCCGACGATGACGT
CGACAACGGGACAGCAGCACGGCATCGGCCCGAGAACAGGGGGGAGAGGG
CTAAGGGGATACCCCGATGGCCACGGTGGCGGGAGCGTAGGGGGGCAGCA
AGCCGGGCTACGGGGAGGGGGGTTGGCGGAAGCCGCCGCTGCTGCATCTG
CGGCTAGGCGACGCAGCATGCAGGGGGCTCGCGGAGGGGGGGCGGGGGGA
GGGGACATGTCGAAGGGCAGCGCCATCACGGTGGCGGATTCCGTGATCTC
GAGGTCGACCGCCAGACGCGGAAGATGGTGACGGCAGCTGGTTGTGCCGA
TGGTGGTAACGGATGGATGCAGATGGACGTGGGAATGTTGACGCTTCACC
TCTACCCCCCTAACGCCACCCTGGAATCCTGATGTGTGTGTCGTTTTGTT
TTCTTTTCGTGGCCGTCGTGTATGCGAATATATATGCTCTTCTTGTGCGA
CTATGGTAGATCCTGCAGTGCGTATGCCGCTTTGGTAGCTTTTTTCGTGC
TGCTTCTGCTGCTGCTGCGTTGATATACGGGGAGCTGCTGCTGCTTGCCT
GCGTTTGGTGCTCGAACCCGCGAGGGCGCGACCAATTGCCAACTTGAAAA
GGGTTGTTTGGTTCCTCATAGTGTTGTTTTGAGGGCGGACGGCGGATGGG
ACATCAAGGACGGGGCGAACAGGGAAAGCTTGTGTTCGCCGTAAGCGCGG
TGTAATAACCGTGTGGTGGCGGGGTAGTAGAGGCCAGCCGGTCGTGTTTC
CAGCTTCCGGGCTTCCATCGTCCACTGCTGATTTTTTGCAGGCTCGTCTT
TCCCCTCGTACTACATACGTTGTCATGCTGCCTGACCCGACCCCAGCTGG
TAGCTTGCTGTGCCGGAGGTGCGTTGTGTTGGGTCTCGGTCGATCGAATT
AGTTGTTGGTTGCCTAGGACTATTTTATTGTTCTTTTCTCTTCTTTTTGC
GGCGTGATGCGTTTTTTTTCGCTGT
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protein sequence of EsuBft114_17a-0001

>EsuBft114_17 ID=EsuBft114_17|Name=EsuBft114_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=376bp
MTVDKVTFVTTRQHLRRREEPYFRLTPSQLNELLSEYEQDQQEGVHDFRD
HIDPDHHGPKVVEYEPDAKPSYDRPYLVLDVRTPEEFKRCRIVQARSFEA
KLLNQDRMTPELYMYKNREGGLVILYSNDDADACHAARTLIHRGFDNIFV
LSGGLVAFAREGFQSFVEGNVEALPPPPPAPASGAGTLRTGGGGGLRSTA
VSDGVGSSSTGGGGAVGRFSGARGGSECNDGRSGGGGRLEYRNRGGQRVV
VRGGGSDDINSSTSSTRNSALGGGGGGGVPTMTSTTGQQHGIGPRTGGRG
LRGYPDGHGGGSVGGQQAGLRGGGLAEAAAAASAARRRSMQGARGGGAGG
GDMSKGSAITVADSVISRSTARRGRW
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mRNA from alignment at Scaffold_129:994434..998372-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft114_17a-0001 ID=EsuBft114_17a-0001|Name=EsuBft114_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3939bp|location=Sequence derived from alignment at Scaffold_129:994434..998372- (Ectocarpus subulatus male Bft15b)
ATGACCGTAGACAAGGTGACCTTCGTCACCACACGGCAGCACCTAAGGCG
GCGGGAGGAACCGTACTTCAGGCTCACGCCGTCCCAACTGAACGAGCTCT
TGAGCGAGTACGAGCAGGTGGGTGTTGTGGTGTAGCGCGGAGGAGAGGTG
GAGAGAGGCCCAAGACAGAATGGTACACCGATAAGTGGGATGAGAGTCAA
GTGTGTGTTCATGCAGGCAGCTGTATATGGAGAGCGAGGAAGGGAGCGAA
GAGAGAGGAACGAGAGAGAAGCATGCGTGTTTTCCATCGTGATGTTCCCA
GGCCGGTACCCGTCATGCGCGCACATGTTAAAGCCCTCTGGCCCCGTCCC
GGAGAACACTGTAGAAGAGAGGACGGGATCGCTCGCACTTGGGCAATCGA
TGGTCCATTAGCCGAAAGGAGTGTGGAATACGGCAGGCAGCATCTGTGTA
CCACCGCATGGAAGTGCTGCGACAGTGTCGTCGCCGCATGCACCCACGTT
TTTGCTTTTTTTCGTCCGAGCGGTGTTGAAGCGTTGTTTCACTTCTTGCC
GTTGTCCTCCCGACCGGGTATGTATGGTAGTTCGCGCCGTACCTCTGTCG
TCCAAAACAATCGACATTGAAGATTTTTTGGCCAGTTGACGTTGTGTTGA
CTTCCTGCGTCATGGAATGGTTTTGACTTTTTTTTTTTCTTCTATTTTTG
CGCTTTTCAACGGACATCGCCAGCAACACCCACCTAAACACCAAGAACAA
GAAACGAAAACACCGAGAACAAGAAACGAAAACACCACCGGCAGCGAAAA
GCGATTTGACCAACACCAACCAACGACGAAACGAAGCAGGACCAACAAGA
GGGGGTGCACGACTTCCGAGACCACATCGACCCCGACCACCACGGCCCCA
AAGTGGTGGAGTACGAGCCCGACGCCAAGCCGAGCTACGACCGCCCCTAC
CTCGTCCTCGACGTCCGCACCCCCGAGGAGTTCAAGCGGTGCCGCATTGT
GCAGGTGACCTGCAGTTGTTGTTGTTCTTCTTCTTGTAGTTGTTGTTGCC
TTCACGTTAAAAACCGTTCCGATCTTTCCACTCAGCACCTTCATCTGTCC
GTACTGATCAAGCACATGACCGGTCGATTCCCGTGGCCAGTGCCTTACGG
TTATGTCCTACGCCGCGACGGACATGGCAGTAGACAGCATAAACGGAGCC
ATTATCGTACAGCAGTACGGTGGTGTTGTACTACGATGCAGCGAAAATGG
GGGGGGTGTCGTCATCAAGACTACCACATTTGTTGGTTGACTTTCGCCTA
CTTTTTGGCCTGTTGTCCTCCCCCCCCCCCCTCCCTCTTCTGCTGGCCGT
ACCGGGTGAACGAACGACTCGGAAGGCGCGATCTTTCGAGGCCAAGCTGC
TCAACCAGGACAGAATGACGCCGGAGCTCTACATGTACAAGAACCGGGAG
GGCGGGCTGGTGATCCTCTACTCGAACGACGATGCCGATGCTTGCCACGT
GAGAAATAGAAGAGGGAGAGGATGCGGCGGCGTGGGCGGGCGGAGGAGAG
TGCGGGGGCAAGGGTTGAAACCCTCAACCCCCCGCTCATCCCTTCTGCGC
CTCCTGCCTTGACAAAACAGTTAACGTGGTGCTTTGATTTTTGTTGTCTT
GGCTTCATCTGTTTTTTCTTTTTTGAACCCTGTGTTCTGCCTCTCTCTAT
CTTTGTGCCTCTCTCCTCACATTTCCTCGCCACAACCCCTTATTGTTGGG
CGTACTAGCCGGACCTCACCGCTGTTGTACGTTGTGGTTGGCGTATGTGA
CGCAAGAGGCTCGGGTAGAGAAACACAGAGTGATCATTATTTCACACATT
GCCCAAACCCTGCAGTAGAATAGAGTCAGTGCTTGCACACAATTCTCCCA
ACACTTATCACTCCTCTCCCCCCGACGCCAAGGATAAGGAGGGTCTAGAA
GTGTACGGAATGTTGAAGGAAGGAATAGGGTTCAAGGACTACCTACATGG
ACCAATGGATGCAGGAACAAAGCTTAAGGTCAAATTCAGGACCGGGGACA
TAGGCCTTCGAGAACGTCGACGAAGACATAGGACGGTAGACGAGGAAGAC
GACGAGTTCAAATGTGATTGCGGCTTCGAATGCGAAGACCGTGTTCATGT
AGTCGCGGAATGTCCGTTGTACAAGAAGGAGAGGGAAGTGTACGTGACTG
AGCTGGGAAAAATAGATGGAACGTACAGGGAGATGTTTGAGGCATGGAAT
AGAGAGGAAAGGACGGTAGCTGTACTGGGGCATAGGAGGTGGGTTGAAAA
GGCGGGAAGGGATATCGTTAGGATAGACAGACTAGGGAAGACATTTTTGA
GCCACCTTTGGCAAAGTAGAAAGGAACGATTGGCCATCGGTGATCGGTCC
TGTGGGAACAATGCTCCGTCCTCTCGAGGACGCGTGGTCAATGGTCTAAC
CGCTAAGACATGCAAAACATAAGAGTACGCCCCCCCCGACGCCGCTTCGC
ATCTAATAACGCCTGTCAGGCCGCGAGGACCTTGATTCACAGGGGGTTCG
ACAACATCTTCGTGCTCTCCGGCGGTCTGGTCGCCTTCGCGCGAGAGGGT
TTCCAAAGCTTCGTGGAGGGGAACGTCGAGGCCTTGCCGCCGCCACCGCC
GGCACCCGCGTCCGGGGCCGGTACCTTGCGTACTGGCGGCGGGGGGGGCT
TGAGAAGTACTGCCGTATCAGACGGGGTAGGCAGCAGCAGCACCGGCGGC
GGCGGCGCCGTTGGCAGGTTTAGCGGGGCGAGGGGAGGCAGCGAATGCAA
CGACGGCCGCAGCGGCGGCGGGGGGAGGCTGGAGTACAGAAACCGCGGGG
GTCAGAGAGTGGTAGTCAGGGGCGGCGGCAGCGATGACATCAACAGCAGC
ACCAGCAGCACCAGGAACTCCGCCCTGGGCGGCGGCGGAGGCGGTGGCGT
GCCGACGATGACGTCGACAACGGGACAGCAGCACGGCATCGGCCCGAGAA
CAGGGGGGAGAGGGCTAAGGGGATACCCCGATGGCCACGGTGGCGGGAGC
GTAGGGGGGCAGCAAGCCGGGCTACGGGGAGGGGGGTTGGCGGAAGCCGC
CGCTGCTGCATCTGCGGCTAGGCGACGCAGCATGCAGGGGGCTCGCGGAG
GGGGGGCGGGGGGAGGGGACATGTCGAAGGGCAGCGCCATCACGGTGGCG
GATTCCGTGATCTCGAGGTCGACCGCCAGACGCGGAAGATGGTGACGGCA
GCTGGTTGTGCCGATGGTGGTAACGGATGGATGCAGATGGACGTGGGAAT
GTTGACGCTTCACCTCTACCCCCCTAACGCCACCCTGGAATCCTGATGTG
TGTGTCGTTTTGTTTTCTTTTCGTGGCCGTCGTGTATGCGAATATATATG
CTCTTCTTGTGCGACTATGGTAGATCCTGCAGTGCGTATGCCGCTTTGGT
AGCTTTTTTCGTGCTGCTTCTGCTGCTGCTGCGTTGATATACGGGGAGCT
GCTGCTGCTTGCCTGCGTTTGGTGCTCGAACCCGCGAGGGCGCGACCAAT
TGCCAACTTGAAAAGGGTTGTTTGGTTCCTCATAGTGTTGTTTTGAGGGC
GGACGGCGGATGGGACATCAAGGACGGGGCGAACAGGGAAAGCTTGTGTT
CGCCGTAAGCGCGGTGTAATAACCGTGTGGTGGCGGGGTAGTAGAGGCCA
GCCGGTCGTGTTTCCAGCTTCCGGGCTTCCATCGTCCACTGCTGATTTTT
TGCAGGCTCGTCTTTCCCCTCGTACTACATACGTTGTCATGCTGCCTGAC
CCGACCCCAGCTGGTAGCTTGCTGTGCCGGAGGTGCGTTGTGTTGGGTCT
CGGTCGATCGAATTAGTTGTTGGTTGCCTAGGACTATTTTATTGTTCTTT
TCTCTTCTTTTTGCGGCGTGATGCGTTTTTTTTCGCTGT
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Coding sequence (CDS) from alignment at Scaffold_129:994434..998372-

>EsuBft114_17a-0001 ID=EsuBft114_17a-0001|Name=EsuBft114_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1131bp|location=Sequence derived from alignment at Scaffold_129:994434..998372- (Ectocarpus subulatus male Bft15b)
ATGACCGTAGACAAGGTGACCTTCGTCACCACACGGCAGCACCTAAGGCG
GCGGGAGGAACCGTACTTCAGGCTCACGCCGTCCCAACTGAACGAGCTCT
TGAGCGAGTACGAGCAGGACCAACAAGAGGGGGTGCACGACTTCCGAGAC
CACATCGACCCCGACCACCACGGCCCCAAAGTGGTGGAGTACGAGCCCGA
CGCCAAGCCGAGCTACGACCGCCCCTACCTCGTCCTCGACGTCCGCACCC
CCGAGGAGTTCAAGCGGTGCCGCATTGTGCAGGCGCGATCTTTCGAGGCC
AAGCTGCTCAACCAGGACAGAATGACGCCGGAGCTCTACATGTACAAGAA
CCGGGAGGGCGGGCTGGTGATCCTCTACTCGAACGACGATGCCGATGCTT
GCCACGCCGCGAGGACCTTGATTCACAGGGGGTTCGACAACATCTTCGTG
CTCTCCGGCGGTCTGGTCGCCTTCGCGCGAGAGGGTTTCCAAAGCTTCGT
GGAGGGGAACGTCGAGGCCTTGCCGCCGCCACCGCCGGCACCCGCGTCCG
GGGCCGGTACCTTGCGTACTGGCGGCGGGGGGGGCTTGAGAAGTACTGCC
GTATCAGACGGGGTAGGCAGCAGCAGCACCGGCGGCGGCGGCGCCGTTGG
CAGGTTTAGCGGGGCGAGGGGAGGCAGCGAATGCAACGACGGCCGCAGCG
GCGGCGGGGGGAGGCTGGAGTACAGAAACCGCGGGGGTCAGAGAGTGGTA
GTCAGGGGCGGCGGCAGCGATGACATCAACAGCAGCACCAGCAGCACCAG
GAACTCCGCCCTGGGCGGCGGCGGAGGCGGTGGCGTGCCGACGATGACGT
CGACAACGGGACAGCAGCACGGCATCGGCCCGAGAACAGGGGGGAGAGGG
CTAAGGGGATACCCCGATGGCCACGGTGGCGGGAGCGTAGGGGGGCAGCA
AGCCGGGCTACGGGGAGGGGGGTTGGCGGAAGCCGCCGCTGCTGCATCTG
CGGCTAGGCGACGCAGCATGCAGGGGGCTCGCGGAGGGGGGGCGGGGGGA
GGGGACATGTCGAAGGGCAGCGCCATCACGGTGGCGGATTCCGTGATCTC
GAGGTCGACCGCCAGACGCGGAAGATGGTGA
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