EsuBft114_13a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft114_13a-0001
Unique NameEsuBft114_13a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_129contigScaffold_129:1017561..1019732 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog7159.AAEL018005-PB
ProteomeIdEsuBft114_13
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl33208|Metazoa
Length137
Hectar predicted targeting categoryother localisation
Evalue3.02e-09
EggNOG OGsKOG4585@1|root,KOG4585@2759|Eukaryota,39THK@33154|Opisthokonta,3BGF1@33208|Metazoa,3D09T@33213|Bilateria,41Z3Y@6656|Arthropoda,3SIRQ@50557|Insecta,453W1@7147|Diptera,45JC4@7148|Nematocera
Date last modified2016-06-14
Date creation2016-06-14
DescriptionDDE superfamily endonuclease
COG categoryL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft114_13aEsuBft114_13aEctocarpus subulatus male Bft15bgeneScaffold_129 1017561..1019732 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft114_13a-0001EsuBft114_13Ectocarpus subulatus male Bft15bpolypeptideScaffold_129 1017771..1019146 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft114_13a-0001-exonagat-exon-15589Ectocarpus subulatus male Bft15bexonScaffold_129 1017561..1017794 +
EsuBft114_13a-0001-exonEsuBft114_13a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_129 1018418..1018558 +
EsuBft114_13a-0001-exonagat-exon-15590Ectocarpus subulatus male Bft15bexonScaffold_129 1018730..1019732 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft114_13a-0001-exonagat-five_prime_utr-921Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_129 1017561..1017770 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft114_13a-0001-cdsEsuBft114_13a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_129 1017771..1017794 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft114_13a-0001-exonagat-three_prime_utr-1425Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_129 1019147..1019732 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft114_13a-0001 ID=EsuBft114_13a-0001|Name=EsuBft114_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1378bp|location=Sequence derived from alignment at Scaffold_129:1017561..1019732+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGCGATCGCCAATCAACGGCGCCATAGCTGTAGAAGTCCGCGTTGCCGTG
GCGTTGAGGATCCTGGCTGGCGCTAGTTACTGGGATGTTGCCCTCATGTT
TGGCTTGTCGGTGCCGACCACGTACCAGATCTTGTGGTCGGTGATCGACG
CCATCAACAAGATGCCTGCGGGTTGGGGCATTCGACTTCCCCCTGACCGA
GGAAGGCTGCATGCGAAATGCCAACAGATTCAAGGAGAAGAGCACCGATG
GCATTTTCTCCTGGGTCGTCGCCGCCGTGGATGGTCTGTTCATCAAGGCC
AAGGCTCCGTGTGCGAAGGACACCGCCAACGTCATCGCTTACTACTCCGG
CTGCAAGTCCCCGTACGGCATCAACCTTCTGACGCCGTACCCTGGGAGGC
TCCTGCCGCCGGGTGAGGACTCGTGCAACTTCCACCTGAGCCATCTTCGT
GTCAAGATCGAGCAGGGCTTCGGCATCCTGGTTTCGACTTGGGGCATTCT
GTGGCGACCTCTCCGTGTGCAGTTCGGAGGACGTGCGGATCTCATCACGG
CTCATTTTCATCTGCACAACTTCCTGCAAGACGAGAAGGTAGCGCCGATC
CAGCTTGCAGAGGAGGACTCCTGCAGCGGGCGCAACCGGCTGGCCCTCCG
TGCTACGCAGCGCACCTTGCCGGCTGGCTGGCAAGCGAAGCAACCGGCTC
CTTCGAGGAGCGGTGAGACCCCGGCCCGAGCGGCTATCCGCATGATAGCG
GCGCGGGAGGGAGGGGCGCGGGAGGGAGGTACCTCAATGTAGAGGGCGAA
GGGCGCTGGAACAACGTGTTTTGGGTGTTAGCGCTAGGGTGTCGGCACGT
CCCGGGGAGAGGTGGGGGGTGTGATGTGTGACATGTTGATTCTCGCTCAC
ATGTTTTGTGGGTGTCGGTGTGGAGCGTTCTGACCAGATATGTCCGGGTA
CACTTGGTTCGTAATGTGTTTGTTCATGCCGGCAACACTTTATGGTTAAC
ATGCATCGTGTGCGGATGAAAGCGGGGTCTGGTAGGTCTCGGAGGGTGCT
TGTTTTACCTAGGGCATTAAAAGTGTGGGCATGTTCGACTTTTGTTTTTT
CCTAATTAGGAGCGTATGAATCGAAAACGTTGTTGTCGTTGATACAACTT
TGAATGGTGTCTCTGCATCCCTGCATTAAATATTCGTCGCGTGGGTGAAA
CATTGCTCCAGGTTGCAGACCTGAAGGAGACCCACACACACGCTAAAAAT
TGGGGTCTTGTCGAATCCCATCGCGAACACATTCCTGCGCTTCAAGTGAG
CATGCGCGGAGACGGGAAAAATAGTAAGGCTCCAAATTTGCGGAACCCAA
GCGTGCCTCAGAGTTCCCGTCAACACCC
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protein sequence of EsuBft114_13a-0001

>EsuBft114_13 ID=EsuBft114_13|Name=EsuBft114_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=193bp
MRNANRFKEKSTDGIFSWVVAAVDGLFIKAKAPCAKDTANVIAYYSGCKS
PYGINLLTPYPGRLLPPGEDSCNFHLSHLRVKIEQGFGILVSTWGILWRP
LRVQFGGRADLITAHFHLHNFLQDEKVAPIQLAEEDSCSGRNRLALRATQ
RTLPAGWQAKQPAPSRSGETPARAAIRMIAAREGGAREGGTSM
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mRNA from alignment at Scaffold_129:1017561..1019732+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft114_13a-0001 ID=EsuBft114_13a-0001|Name=EsuBft114_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2172bp|location=Sequence derived from alignment at Scaffold_129:1017561..1019732+ (Ectocarpus subulatus male Bft15b)
TGCGATCGCCAATCAACGGCGCCATAGCTGTAGAAGTCCGCGTTGCCGTG
GCGTTGAGGATCCTGGCTGGCGCTAGTTACTGGGATGTTGCCCTCATGTT
TGGCTTGTCGGTGCCGACCACGTACCAGATCTTGTGGTCGGTGATCGACG
CCATCAACAAGATGCCTGCGGGTTGGGGCATTCGACTTCCCCCTGACCGA
GGAAGGCTGCATGCGAAATGCCAACAGATTCAAGGTGAGGCCAAACGGTG
GTCATTACTGCTGCTGTGGGTTATTCTTGGCGGCATTCTCTTGACCAGCC
GCGGGATGTCGTTTTTTTTTAATTACGTCTGGCGTTTCCAGCCGTTTTAG
TGTAGGAAGGCCTATACACAGCCTTCGACGGTAACGCAGGCAAAAAAATG
TCGTCCCCGGCGGATACAAGTTCGGATTGTCATCGTGGTCAGCATGCCTT
TAATTGAAATACAACCCCCGGGTCCCGGGTGGTTCGCCAGCTGTTGGTCT
GTGTACAAATGGCCTTTTTACAAATGAATGTTTTTTTTTGTGTCATCATT
ATGTATGCTGGCCGTGTTGGTTCCGCCCCGCAACAGTGGCCCGGCAACTA
ACTGCTTTAAGTCAACCACGTGGCTCTGAGATACCCTGGTACATTTTTAC
CGCTGAACCTGACGCAATATTAGGATTAGCAAACACGGCATGTGCACCGT
TGCTGGTGACGGCGCCGTCGCACACGACATCAACCCACACAACGTACAGC
CGAACGCAATTTACCGAAGTTCGTCAACGTCCATCTCTCGACTAGTTTTG
TTCCCCTTCCCGGCACTGCTACTTTCCCGCCCTCGTATCTGCCGTCTACA
AATGCAGGAGAAGAGCACCGATGGCATTTTCTCCTGGGTCGTCGCCGCCG
TGGATGGTCTGTTCATCAAGGCCAAGGCTCCGTGTGCGAAGGACACCGCC
AACGTCATCGCTTACTACTCCGGCTGCAAGTCCCCGTACGGCATCAACGT
ACAAGCGATGTGCACCGCCGACTACCGGTTCTGCGCAATGTCGGCGATCT
CTTCAGGCTCCACGAACGACTGGGTGGCATGGAATCGATCTTCCCTCGCC
AAGGCCGTCGCCCGCTTGCCCGCCGGATTTCACATCATTGGTGACGCCGC
CTATCCCATCGGAGAATAGCTTCTGACGCCGTACCCTGGGAGGCTCCTGC
CGCCGGGTGAGGACTCGTGCAACTTCCACCTGAGCCATCTTCGTGTCAAG
ATCGAGCAGGGCTTCGGCATCCTGGTTTCGACTTGGGGCATTCTGTGGCG
ACCTCTCCGTGTGCAGTTCGGAGGACGTGCGGATCTCATCACGGCTCATT
TTCATCTGCACAACTTCCTGCAAGACGAGAAGGTAGCGCCGATCCAGCTT
GCAGAGGAGGACTCCTGCAGCGGGCGCAACCGGCTGGCCCTCCGTGCTAC
GCAGCGCACCTTGCCGGCTGGCTGGCAAGCGAAGCAACCGGCTCCTTCGA
GGAGCGGTGAGACCCCGGCCCGAGCGGCTATCCGCATGATAGCGGCGCGG
GAGGGAGGGGCGCGGGAGGGAGGTACCTCAATGTAGAGGGCGAAGGGCGC
TGGAACAACGTGTTTTGGGTGTTAGCGCTAGGGTGTCGGCACGTCCCGGG
GAGAGGTGGGGGGTGTGATGTGTGACATGTTGATTCTCGCTCACATGTTT
TGTGGGTGTCGGTGTGGAGCGTTCTGACCAGATATGTCCGGGTACACTTG
GTTCGTAATGTGTTTGTTCATGCCGGCAACACTTTATGGTTAACATGCAT
CGTGTGCGGATGAAAGCGGGGTCTGGTAGGTCTCGGAGGGTGCTTGTTTT
ACCTAGGGCATTAAAAGTGTGGGCATGTTCGACTTTTGTTTTTTCCTAAT
TAGGAGCGTATGAATCGAAAACGTTGTTGTCGTTGATACAACTTTGAATG
GTGTCTCTGCATCCCTGCATTAAATATTCGTCGCGTGGGTGAAACATTGC
TCCAGGTTGCAGACCTGAAGGAGACCCACACACACGCTAAAAATTGGGGT
CTTGTCGAATCCCATCGCGAACACATTCCTGCGCTTCAAGTGAGCATGCG
CGGAGACGGGAAAAATAGTAAGGCTCCAAATTTGCGGAACCCAAGCGTGC
CTCAGAGTTCCCGTCAACACCC
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Coding sequence (CDS) from alignment at Scaffold_129:1017561..1019732+

>EsuBft114_13a-0001 ID=EsuBft114_13a-0001|Name=EsuBft114_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=582bp|location=Sequence derived from alignment at Scaffold_129:1017561..1019732+ (Ectocarpus subulatus male Bft15b)
ATGCGAAATGCCAACAGATTCAAGGAGAAGAGCACCGATGGCATTTTCTC
CTGGGTCGTCGCCGCCGTGGATGGTCTGTTCATCAAGGCCAAGGCTCCGT
GTGCGAAGGACACCGCCAACGTCATCGCTTACTACTCCGGCTGCAAGTCC
CCGTACGGCATCAACCTTCTGACGCCGTACCCTGGGAGGCTCCTGCCGCC
GGGTGAGGACTCGTGCAACTTCCACCTGAGCCATCTTCGTGTCAAGATCG
AGCAGGGCTTCGGCATCCTGGTTTCGACTTGGGGCATTCTGTGGCGACCT
CTCCGTGTGCAGTTCGGAGGACGTGCGGATCTCATCACGGCTCATTTTCA
TCTGCACAACTTCCTGCAAGACGAGAAGGTAGCGCCGATCCAGCTTGCAG
AGGAGGACTCCTGCAGCGGGCGCAACCGGCTGGCCCTCCGTGCTACGCAG
CGCACCTTGCCGGCTGGCTGGCAAGCGAAGCAACCGGCTCCTTCGAGGAG
CGGTGAGACCCCGGCCCGAGCGGCTATCCGCATGATAGCGGCGCGGGAGG
GAGGGGCGCGGGAGGGAGGTACCTCAATGTAG
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