EsuBft113_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft113_5a-0001
Unique NameEsuBft113_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_637contigScaffold_637:481558..482010 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog7070.TC009115-PA
ProteomeIdEsuBft113_5
Protein domainsPTHR11439
Ownerapollo_admin@sb-roscoff.fr
Notecopia protein os:drosophila melanogaster gn:gip pe:1 sv:3 [Automatic annotation]
Nb exon1
Max annot lvl33208|Metazoa
Length453
Hectar predicted targeting categoryother localisation
Evalue1.34e-11
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3BGB6@33208|Metazoa,3D5G4@33213|Bilateria,41ZUZ@6656|Arthropoda,3SKEY@50557|Insecta
Date last modified2016-06-13
Date creation2016-06-13
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
COG categoryL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft113_5aEsuBft113_5aEctocarpus subulatus male Bft15bgeneScaffold_637 481558..482010 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft113_5a-0001-exonEsuBft113_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_637 481558..482010 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft113_5a-0001-cdsEsuBft113_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_637 481558..481764 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft113_5a-0001-exonagat-three_prime_utr-1348Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_637 481765..482010 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft113_5a-0001EsuBft113_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_637 481558..481764 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft113_5a-0001 ID=EsuBft113_5a-0001|Name=EsuBft113_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=453bp|location=Sequence derived from alignment at Scaffold_637:481558..482010+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTTGGTGCAGAACCCTCTCAGCTCAGGTCGCACGAAACACATCGA
CGTGCGGTTTCATTTCATCCGCGGATTGTTTAGGTCGGGGGAAATTTCGG
TCAAGTTTGTCCCGACAACGGAGCAACACGCGGACCTCCTCACCAAGGCC
CTTAGCAGGGCCAGTCGGCAGTATCACCGGCGCAAGCTGATGAATTTGCC
GAAGTAGCTGTAGCAGTTTCTAGCACTTGGGAGAGGCCATGTTTTCCGTG
CGGGGAAAGGCGCATAACTGTTGCGGTCTGTGTACCACTGGCAGGAGTAG
GGGGCGTTGGGAGACCATCGTCCGGGGGAACGTAGTTCCTCGCGTTCTTG
TCTTCGCCTTGGCCTTTCTAGTAAGTGCGGCCGTTGTGATCCGCTGTGAT
AGCGACGGTTTTTTGTGGTGGTAGGTTTTTCCTTGAGGGGTTTTGCCCGG
ACG
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protein sequence of EsuBft113_5a-0001

>EsuBft113_5 ID=EsuBft113_5|Name=EsuBft113_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=68bp
MALVQNPLSSGRTKHIDVRFHFIRGLFRSGEISVKFVPTTEQHADLLTKA
LSRASRQYHRRKLMNLPK
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mRNA from alignment at Scaffold_637:481558..482010+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft113_5a-0001 ID=EsuBft113_5a-0001|Name=EsuBft113_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=453bp|location=Sequence derived from alignment at Scaffold_637:481558..482010+ (Ectocarpus subulatus male Bft15b)
ATGGCGTTGGTGCAGAACCCTCTCAGCTCAGGTCGCACGAAACACATCGA
CGTGCGGTTTCATTTCATCCGCGGATTGTTTAGGTCGGGGGAAATTTCGG
TCAAGTTTGTCCCGACAACGGAGCAACACGCGGACCTCCTCACCAAGGCC
CTTAGCAGGGCCAGTCGGCAGTATCACCGGCGCAAGCTGATGAATTTGCC
GAAGTAGCTGTAGCAGTTTCTAGCACTTGGGAGAGGCCATGTTTTCCGTG
CGGGGAAAGGCGCATAACTGTTGCGGTCTGTGTACCACTGGCAGGAGTAG
GGGGCGTTGGGAGACCATCGTCCGGGGGAACGTAGTTCCTCGCGTTCTTG
TCTTCGCCTTGGCCTTTCTAGTAAGTGCGGCCGTTGTGATCCGCTGTGAT
AGCGACGGTTTTTTGTGGTGGTAGGTTTTTCCTTGAGGGGTTTTGCCCGG
ACG
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Coding sequence (CDS) from alignment at Scaffold_637:481558..482010+

>EsuBft113_5a-0001 ID=EsuBft113_5a-0001|Name=EsuBft113_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=207bp|location=Sequence derived from alignment at Scaffold_637:481558..482010+ (Ectocarpus subulatus male Bft15b)
ATGGCGTTGGTGCAGAACCCTCTCAGCTCAGGTCGCACGAAACACATCGA
CGTGCGGTTTCATTTCATCCGCGGATTGTTTAGGTCGGGGGAAATTTCGG
TCAAGTTTGTCCCGACAACGGAGCAACACGCGGACCTCCTCACCAAGGCC
CTTAGCAGGGCCAGTCGGCAGTATCACCGGCGCAAGCTGATGAATTTGCC
GAAGTAG
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