EsuBft113_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft113_4a-0001
Unique NameEsuBft113_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_637contigScaffold_637:465061..466291 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LUB1
ProteomeIdEsuBft113_4
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Max annot lvl2759|Eukaryota
Length84
Hectar predicted targeting categoryother localisation
Evalue1.38e-42
EggNOG OGsKOG1225@1|root,KOG1225@2759|Eukaryota
Date last modified2016-06-13
Date creation2016-06-13
Descriptionregulation of canonical Wnt signaling pathway involved in osteoblast differentiation
COG categoryL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft113_4aEsuBft113_4aEctocarpus subulatus male Bft15bgeneScaffold_637 465061..466291 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft113_4a-0001EsuBft113_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_637 465558..466262 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft113_4a-0001-exonagat-exon-5143Ectocarpus subulatus male Bft15bexonScaffold_637 465061..465614 -
EsuBft113_4a-0001-exonagat-exon-5144Ectocarpus subulatus male Bft15bexonScaffold_637 465758..465787 -
EsuBft113_4a-0001-exonEsuBft113_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_637 465894..466058 -
EsuBft113_4a-0001-exonagat-exon-5142Ectocarpus subulatus male Bft15bexonScaffold_637 466194..466291 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft113_4a-0001-exonagat-three_prime_utr-1347Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_637 465061..465557 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft113_4a-0001-cdsEsuBft113_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_637 465558..465614 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft113_4a-0001-exonagat-five_prime_utr-863Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_637 466263..466291 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft113_4a-0001 ID=EsuBft113_4a-0001|Name=EsuBft113_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=847bp|location=Sequence derived from alignment at Scaffold_637:465061..466291- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCCTCGTGCTAGACGTGAGGCTCGCCGTTATGTACCTCACCGACACGCAC
GTCCCCTCGATCATGCGGGGAAACATGCGGAACTATACCGACGAAGGGAT
TGTCACGATATTGAGCGGCGTGACCCAAGAGCGACGCGGCGAGCTCCGAG
TAGAAGACTACTACCAGACCCTAACAGACCCGCAGGCCCTCCAGCTGGAC
ACCAGGCTAGAGGATCTCGACCTGCTGTACTTCTCCGACTACGGGACGGG
ATATATTTACTCGGTGTCCAAGATGATCATCCGCAGGCAACAGGAAGATG
CAAAGGACCCGAACTCATTAGCTTCTCCTAAAAACCGCTTGGGCGTTTGA
GTACCTTACGTTGACCGCGACGCCAATGCAAATGCCGATGCTGATGATCT
CCCCACTGCCGGCGCGGCGTGTTGGTGCATGTATATGTCGCTGGGATGGC
GGTGCGACATGGGAACCCCACTGTGTGTTGTGTGTGTGTGTGTGTTTTCG
TCCTATTTATTATGGCGACAGTCCCCCCATTTTCGTGGTGAGACGTGTAC
TACACTCTTCAGCGTATGTATGTATAGTACTACACTGTTCAGTGTATTTT
TCGTACAACTACAACCATCCAGGGTCACACAGGAGGGGGTAAACACCAGG
ACTTTTTTCTTCTTTTTATTTCTTTTCATGCCCCACCTTCCTCCTGCGGT
GCGTGCTGAATACTGGTTTTATCGCGAGAAGGGTCCAGCCGTCCCTTTCC
CTCGTCAACGGTGCTAACGTCGAAGTTTGGTACTCACGAGGGCTTGTCAG
CTATATTTCGCTTTCACCCGCACATTTCGTAATTTTTTCACCCCATG
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protein sequence of EsuBft113_4a-0001

>EsuBft113_4 ID=EsuBft113_4|Name=EsuBft113_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=106bp
MYLTDTHVPSIMRGNMRNYTDEGIVTILSGVTQERRGELRVEDYYQTLTD
PQALQLDTRLEDLDLLYFSDYGTGYIYSVSKMIIRRQQEDAKDPNSLASP
KNRLGV
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mRNA from alignment at Scaffold_637:465061..466291-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft113_4a-0001 ID=EsuBft113_4a-0001|Name=EsuBft113_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1231bp|location=Sequence derived from alignment at Scaffold_637:465061..466291- (Ectocarpus subulatus male Bft15b)
CCCTCGTGCTAGACGTGAGGCTCGCCGTTATGTACCTCACCGACACGCAC
GTCCCCTCGATCATGCGGGGAAACATGCGGAACTATACCGACGAAGGGGT
GAGCGTGTCAAAGCAGCCGAGGGAGAACCGCACGTCCGAGTGTGTGCGAT
GTGCGTGCTATTCGCAGATATATATTTTTGTGGTATGTGTGACATAATAT
TCAAAAATAGCCAATCCCGAAATCCCCACCCAGATTGTCACGATATTGAG
CGGCGTGACCCAAGAGCGACGCGGCGAGCTCCGAGTAGAAGACTACTACC
AGACCCTAACAGACCCGCAGGCCCTCCAGCTGGACACCAGGCTAGAGGAT
CTCGACCTGCTGTACTTCTCCGACTACGGGACGGGATATATTTACTCGGT
GAGAGCTAAGGAGGCCAGTCTGGTGACCCCCCCCCCCCCCCCNNNNNNNN
NNNNNNNNNNNNNCCCCCCCCCCCCCGCCAATCCCACCCCCAGCAAGCAT
GTAGGTGTCCAAGATGATCATCCGCAGGCAACAGGTACAAGGGCATATCG
CGCCTTTGCGACCTTCAGATACCCAGCAAATTCCTACCTTTTTCTGTCCG
TTTTGTTGTTAGAAGTTGCAGAGTGGTGTGGGTTGTTTCGAGCGCTTCTT
TTTTAGAGGACGGCCGTAAGGAAACAGGAAGATGCAAAGGACCCGAACTC
ATTAGCTTCTCCTAAAAACCGCTTGGGCGTTTGAGTACCTTACGTTGACC
GCGACGCCAATGCAAATGCCGATGCTGATGATCTCCCCACTGCCGGCGCG
GCGTGTTGGTGCATGTATATGTCGCTGGGATGGCGGTGCGACATGGGAAC
CCCACTGTGTGTTGTGTGTGTGTGTGTGTTTTCGTCCTATTTATTATGGC
GACAGTCCCCCCATTTTCGTGGTGAGACGTGTACTACACTCTTCAGCGTA
TGTATGTATAGTACTACACTGTTCAGTGTATTTTTCGTACAACTACAACC
ATCCAGGGTCACACAGGAGGGGGTAAACACCAGGACTTTTTTCTTCTTTT
TATTTCTTTTCATGCCCCACCTTCCTCCTGCGGTGCGTGCTGAATACTGG
TTTTATCGCGAGAAGGGTCCAGCCGTCCCTTTCCCTCGTCAACGGTGCTA
ACGTCGAAGTTTGGTACTCACGAGGGCTTGTCAGCTATATTTCGCTTTCA
CCCGCACATTTCGTAATTTTTTCACCCCATG
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Coding sequence (CDS) from alignment at Scaffold_637:465061..466291-

>EsuBft113_4a-0001 ID=EsuBft113_4a-0001|Name=EsuBft113_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=321bp|location=Sequence derived from alignment at Scaffold_637:465061..466291- (Ectocarpus subulatus male Bft15b)
ATGTACCTCACCGACACGCACGTCCCCTCGATCATGCGGGGAAACATGCG
GAACTATACCGACGAAGGGATTGTCACGATATTGAGCGGCGTGACCCAAG
AGCGACGCGGCGAGCTCCGAGTAGAAGACTACTACCAGACCCTAACAGAC
CCGCAGGCCCTCCAGCTGGACACCAGGCTAGAGGATCTCGACCTGCTGTA
CTTCTCCGACTACGGGACGGGATATATTTACTCGGTGTCCAAGATGATCA
TCCGCAGGCAACAGGAAGATGCAAAGGACCCGAACTCATTAGCTTCTCCT
AAAAACCGCTTGGGCGTTTGA
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