EsuBft113_21a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft113_21a-0001
Unique NameEsuBft113_21a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_637contigScaffold_637:640620..642783 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LU97
ProteomeIdEsuBft113_21
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsTRANSMEMBRANE
Protein domainsIPR011032
Ownerapollo_admin@sb-roscoff.fr
Notereticulon-4-interacting protein mitochondrial os:mus musculus gn:rtn4ip1 pe:1 sv:2 [Automatic annotation]
Nb exon3
Max annot lvl2759|Eukaryota
Length1362
Hectar predicted targeting categorysignal peptide
Evalue6.53e-126
EggNOG OGsCOG0604@1|root,KOG1198@2759|Eukaryota
Date last modified2016-06-13
Date creation2016-06-13
Descriptionoxidoreductase activity
COG categoryC
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft113_21aEsuBft113_21aEctocarpus subulatus male Bft15bgeneScaffold_637 640620..642783 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft113_21a-0001EsuBft113_21Ectocarpus subulatus male Bft15bpolypeptideScaffold_637 641261..642755 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft113_21a-0001-exonagat-exon-5214Ectocarpus subulatus male Bft15bexonScaffold_637 640620..641431 -
EsuBft113_21a-0001-exonEsuBft113_21a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_637 641678..641911 -
EsuBft113_21a-0001-exonagat-exon-5213Ectocarpus subulatus male Bft15bexonScaffold_637 642468..642783 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft113_21a-0001-exonagat-three_prime_utr-1335Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_637 640620..641260 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft113_21a-0001-cdsEsuBft113_21a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_637 641261..641431 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft113_21a-0001-exonagat-five_prime_utr-856Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_637 642756..642783 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft113_21a-0001 ID=EsuBft113_21a-0001|Name=EsuBft113_21a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1362bp|location=Sequence derived from alignment at Scaffold_637:640620..642783- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GCCAGCAGAAACATTAAGTTTAGCCTTCATGAACTGCGCCATCATCCCGT
TCAGCCAACGACGAGGAAGGTGCTCGTGGCTACAAGTCATTCGGCTACTA
GGATGTATGATCTGCTGGAAAACTTCCTTGTTGCTGCTCATATGTTGTTG
TTCCTTCCGCATGTCAACAGCATTCCTCTGCGGGACGATCAGCGGAGGTT
CTTGTGATAAACAGCTGGTTGTAGCTACAGCGATGGAAGCAGCAGCGACG
AGGGGCTCCAGCAGCATCAGCGTCCAGATCAAGCACAGCACGAGGAACCC
TGTCGATGTATATCAGCTTTCTGGCTGCGGCAGCACCTTTTACGCCAGCG
GGTACGACCAGAACGGGAACAAGGACGGCTTGGTCTTGATGCAGACGATA
TCCGGCGTGCTGGACGATGGCCGAGAAGTGATCGGGGTGGTCAAGCCTGG
GAAGTACCCCGGGGGCGGCTCGGTGCTCGTCGAGGAACGCCACCTCGTAG
ACAAGCCCCCGTGCCTGGGCTGGGACAAGGCTGCGATGCTGCCCTTCCTG
GCGATAAGTTGTCTGTGGCCCTTGTCGGAGGCGGGGTTCGGCGACTCCAT
GGATGCTGGACAGACGTTCGTCGTGACGGGAGGCCATGGCAGCCTGGCTC
CTTTCGTTGTCGCCGTCCTGAAGGCGTGGGGGGGGCGGGTGGCTCTGGCG
ACGACCAAAAGCGAAGCGTAAGGGAGCGTTGTTGCGTGATGGGGATCTTC
TATCGTTGCCATGTGTCGCTAAGTAGCTGCCCGCGGCCTTTCAGGTAGCT
GCTAGTGGGACCGGACCCGCGCAAGGACCTCAAACCAAGCAGCTTGTGCG
CTATTCTCCATCCCACACCTGCGCACGGAGGTGCCACTACTACGGTATAC
GCGAAGAGTACTTACACCTCGGTACATGCGCGAGACAGACAGAACCCGAA
TTCCGCTGCTACTCTTGAATGGCCCACCAAACGCCTTGACCCCACGCACA
ACAGCTACTCTCAGAGCATAGCGCAGTCCAGCCTGAAAACGGTAGTCGAA
ACGGTGCTCCACGAAAACTTCTTGCGCCCTGGCCAGCGAGCGGCACAGCA
ACCAATCGCCCCACATTTTGGAGGCGTTCAAGCCACGCGCGAGGCAAAAA
TGAGCCGTGGCGGCGGCGGCTAGTGAACTTTCTCAAGTCCCACAACCAAG
GGACGGCGAAACAGCCCCCCTTCCTCCATCAGATGCTTATCACCATCACC
GCCGTTGTGCTCCTAGACGACCGTTTGTGAAGCGTTGGCGGGTGCGTGCA
CTACAGGAGTAGATCGAGATCACGGGCATGACCAAAGCGCTCATTTTGTA
GTTTTATACGCC
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protein sequence of EsuBft113_21a-0001

>EsuBft113_21 ID=EsuBft113_21|Name=EsuBft113_21a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=230bp
MNCAIIPFSQRRGRCSWLQVIRLLGCMICWKTSLLLLICCCSFRMSTAFL
CGTISGGSCDKQLVVATAMEAAATRGSSSISVQIKHSTRNPVDVYQLSGC
GSTFYASGYDQNGNKDGLVLMQTISGVLDDGREVIGVVKPGKYPGGGSVL
VEERHLVDKPPCLGWDKAAMLPFLAISCLWPLSEAGFGDSMDAGQTFVVT
GGHGSLAPFVVAVLKAWGGRVALATTKSEA
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mRNA from alignment at Scaffold_637:640620..642783-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft113_21a-0001 ID=EsuBft113_21a-0001|Name=EsuBft113_21a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2164bp|location=Sequence derived from alignment at Scaffold_637:640620..642783- (Ectocarpus subulatus male Bft15b)
GCCAGCAGAAACATTAAGTTTAGCCTTCATGAACTGCGCCATCATCCCGT
TCAGCCAACGACGAGGAAGGTGCTCGTGGCTACAAGTCATTCGGCTACTA
GGATGTATGATCTGCTGGAAAACTTCCTTGTTGCTGCTCATATGTTGTTG
TTCCTTCCGCATGTCAACAGCATTCCTCTGCGGGACGATCAGCGGAGGTT
CTTGTGATAAACAGCTGGTTGTAGCTACAGCGATGGAAGCAGCAGCGACG
AGGGGCTCCAGCAGCATCAGCGTCCAGATCAAGCACAGCACGAGGAACCC
TGTCGATGTATATCAGGTGTGCGCAGGGACAAGGAGATGCAGGACAACAG
TTGGGTCTCGCTTCCGCGTAGTTGAGCGCGCAGGAGAGAAGAACTTGCAT
AGACTAGTGGTGCCAACGAAGGTTCAACTTGGTTGCCAAGGGTAGACGAA
AACACAGCTGCTCTACTCTCCGCCAGGGGCGGGAATACCCGCGGCCTTAC
GGGCTCTGGTCATCGAACACTGATGATGAGTTGTTGCTTTCTTGGAGATG
CAGGGTACACAGACCTATATGCTTGTCTCGAGAGACCGGCGAAGGACTGG
GGCGGGGCAGATTGAGGCCAGTCCCTCCCGACAATTCAAAGGCGAACATG
ACAGATTCAGCTCAGTCTCAACAAAATTCAAAGGCAAACATGACAAAAGG
AGCCTCCCAACCCAGAACCAACAATATATAGCAAAGGGTCTCTAGTCTGG
TTAGTAACCATGTTGTCCAACCAACCGACTAACGACGGGTACATGAACCA
TACCCCCTTCGCACGAACCGAACCGAACCCGACTGCCGCCGCCGCCGACG
ACGACGTCGACGACGACCGCAGCTTTCTGGCTGCGGCAGCACCTTTTACG
CCAGCGGGTACGACCAGAACGGGAACAAGGACGGCTTGGTCTTGATGCAG
ACGATATCCGGCGTGCTGGACGATGGCCGAGAAGTGATCGGGGTGGTCAA
GCCTGGGAAGTACCCCGGGGGCGGCTCGGTGCTCGTCGAGGAACGCCACC
TCGTAGACAAGCCCCCGTGCCTGGGCTGGGACAAGGCTGCGATGCTGCCC
TTCCTGGTGAGAAAGCCGGCATTGTTGCACATGCACGGATGCCTCAAGTG
TGAAGTACTACAACAGCCTCCGCGCCAAATCGTATCAAATGTCGTGATGA
GTAAGTATGCCTGCCTGTATCTCGCTTGCTGCTTGTGCTTGCCTCCGGCT
GCGTTAATTGCTTGAGAACAACAGGGACCAACTAACATACTTATTTGCGT
CTTCACATGTTCCTGTTCGTTTTCTCGCCGTTTCCTCTACAAATCCTCCA
AGGCGATAAGTTGTCTGTGGCCCTTGTCGGAGGCGGGGTTCGGCGACTCC
ATGGATGCTGGACAGACGTTCGTCGTGACGGGAGGCCATGGCAGCCTGGC
TCCTTTCGTTGTCGCCGTCCTGAAGGCGTGGGGGGGGCGGGTGGCTCTGG
CGACGACCAAAAGCGAAGCGTAAGGGAGCGTTGTTGCGTGATGGGGATCT
TCTATCGTTGCCATGTGTCGCTAAGTAGCTGCCCGCGGCCTTTCAGGTAG
CTGCTAGTGGGACCGGACCCGCGCAAGGACCTCAAACCAAGCAGCTTGTG
CGCTATTCTCCATCCCACACCTGCGCACGGAGGTGCCACTACTACGGTAT
ACGCGAAGAGTACTTACACCTCGGTACATGCGCGAGACAGACAGAACCCG
AATTCCGCTGCTACTCTTGAATGGCCCACCAAACGCCTTGACCCCACGCA
CAACAGCTACTCTCAGAGCATAGCGCAGTCCAGCCTGAAAACGGTAGTCG
AAACGGTGCTCCACGAAAACTTCTTGCGCCCTGGCCAGCGAGCGGCACAG
CAACCAATCGCCCCACATTTTGGAGGCGTTCAAGCCACGCGCGAGGCAAA
AATGAGCCGTGGCGGCGGCGGCTAGTGAACTTTCTCAAGTCCCACAACCA
AGGGACGGCGAAACAGCCCCCCTTCCTCCATCAGATGCTTATCACCATCA
CCGCCGTTGTGCTCCTAGACGACCGTTTGTGAAGCGTTGGCGGGTGCGTG
CACTACAGGAGTAGATCGAGATCACGGGCATGACCAAAGCGCTCATTTTG
TAGTTTTATACGCC
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Coding sequence (CDS) from alignment at Scaffold_637:640620..642783-

>EsuBft113_21a-0001 ID=EsuBft113_21a-0001|Name=EsuBft113_21a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=693bp|location=Sequence derived from alignment at Scaffold_637:640620..642783- (Ectocarpus subulatus male Bft15b)
ATGAACTGCGCCATCATCCCGTTCAGCCAACGACGAGGAAGGTGCTCGTG
GCTACAAGTCATTCGGCTACTAGGATGTATGATCTGCTGGAAAACTTCCT
TGTTGCTGCTCATATGTTGTTGTTCCTTCCGCATGTCAACAGCATTCCTC
TGCGGGACGATCAGCGGAGGTTCTTGTGATAAACAGCTGGTTGTAGCTAC
AGCGATGGAAGCAGCAGCGACGAGGGGCTCCAGCAGCATCAGCGTCCAGA
TCAAGCACAGCACGAGGAACCCTGTCGATGTATATCAGCTTTCTGGCTGC
GGCAGCACCTTTTACGCCAGCGGGTACGACCAGAACGGGAACAAGGACGG
CTTGGTCTTGATGCAGACGATATCCGGCGTGCTGGACGATGGCCGAGAAG
TGATCGGGGTGGTCAAGCCTGGGAAGTACCCCGGGGGCGGCTCGGTGCTC
GTCGAGGAACGCCACCTCGTAGACAAGCCCCCGTGCCTGGGCTGGGACAA
GGCTGCGATGCTGCCCTTCCTGGCGATAAGTTGTCTGTGGCCCTTGTCGG
AGGCGGGGTTCGGCGACTCCATGGATGCTGGACAGACGTTCGTCGTGACG
GGAGGCCATGGCAGCCTGGCTCCTTTCGTTGTCGCCGTCCTGAAGGCGTG
GGGGGGGCGGGTGGCTCTGGCGACGACCAAAAGCGAAGCGTAA
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