EsuBft113_20a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft113_20a-0001
Unique NameEsuBft113_20a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_637contigScaffold_637:637220..640614 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LU97
ProteomeIdEsuBft113_20
Protein domainsIPR005746
Protein domainsIPR013766
Protein domainsIPR012336
Ownerapollo_admin@sb-roscoff.fr
Notethioredoxin os:chlamydophila caviae (strain gpic) gn:trxa pe:3 sv:1 [Automatic annotation]
Nb exon4
Max annot lvl2759|Eukaryota
Length1590
Hectar predicted targeting categoryother localisation
Evalue3.93e-160
EggNOG OGsCOG0604@1|root,KOG1198@2759|Eukaryota
Date last modified2016-06-13
Date creation2016-06-13
Descriptionoxidoreductase activity
COG categoryC
Cross References
External references for this mRNA
DatabaseAccession
GO0006662
GO0045454
GO0015035
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft113_20aEsuBft113_20aEctocarpus subulatus male Bft15bgeneScaffold_637 637220..640614 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft113_20a-0001EsuBft113_20Ectocarpus subulatus male Bft15bpolypeptideScaffold_637 637857..640438 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft113_20a-0001-exonagat-exon-5210Ectocarpus subulatus male Bft15bexonScaffold_637 637220..638061 -
EsuBft113_20a-0001-exonagat-exon-5211Ectocarpus subulatus male Bft15bexonScaffold_637 638629..638898 -
EsuBft113_20a-0001-exonagat-exon-5212Ectocarpus subulatus male Bft15bexonScaffold_637 639599..639843 -
EsuBft113_20a-0001-exonEsuBft113_20a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_637 640382..640614 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft113_20a-0001-exonagat-three_prime_utr-1334Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_637 637220..637856 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft113_20a-0001-cdsEsuBft113_20a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_637 637857..638061 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft113_20a-0001-exonagat-five_prime_utr-855Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_637 640439..640614 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft113_20a-0001 ID=EsuBft113_20a-0001|Name=EsuBft113_20a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1590bp|location=Sequence derived from alignment at Scaffold_637:637220..640614- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTTATTTTGGTTCGCCCGCGGGGGTTACGCGCGCTTGCTTGTGTCTCTTC
AGGGGGGCGCGAGCGCTGGGGGCAGACCTAGCGGTGGACTTTCGGAAGGA
GAGCTACAGCGACGTGGTGCAAGACTTTAGCGCCGTGGTCGACACTCTCG
GGAGGGAGAAGGAAGGGCCGCAGGACATGCTGAAGGAGGCAAGAGGGGCC
GAGTACGTCTCCCTTCAACCCGCCATCCTGAAGGTGGCAGTGGAAGACGG
TCTGCTGTTTGGGTCGGGTAAGATCTTGCAGTATCAGAAGACCGTCGCGA
AGGACGACAGCAGGACGTACTTCCTCCCGAACCCGGAGGCGGTGGGGCTG
GTCTCGCAGGTCTCGGCGCTGGTTGCCGCGGGGAAAGTGCGGCTAGGGGA
GGTCGGCACGGACTACGTGGGTATGCAGGAGTACCTGGAGGCTCTGGCCT
GGCCCAAGGACACCGACACCGGCCTGCGGTTCGGCTTTCCAGGAAAGACG
AACCGGTCTTGGGGTTGGCTGGGGGGGGATAGTCTCGACGAAAGGCTCGC
TTGGGAAGACGAGGACGAGGAGGAGGACGACGAGTGGGAGGGCGAGGGGG
GAGAGGGAGACGGCGGTAGGGCTGTCTCGCCAACGGGAGAAGTGGTGGGG
TTGAAGAGCCGGCAAGACTTGAAGGACCTCGTGAGGGAAGGGGGAACCAT
AGTTTTCGTGAGCTCGAGGAGTTGCCGGGCCTGCAAGTACCTAACGCCGT
TTTACCGCAAGCTGGCGCGTAGACAAGAACAGGTGTTGTTCGGGCGCGTC
GACGCGTCCACTCACCCCGAACTGGCGCGACAACTAGGCCTGACGGCCGT
GCCTTCCTTCGTTACCTTTCGGGAAGGGGAGGTTGTCACGAGCAAAGCAA
CAAGTAGCAAGAAAAATATCGAGAAGCTTGTGGAGGAGCTGTTGTACGAG
TAGGGTCAGGAGGGGGTGGAGGGGGGGGGGGGGGGGGGGGNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGCGTGAGGAATCAACGCCCGTTAGTTGCTCAGG
TACCACGGGGCTGTGTCGGGGGCTATAGGGGCCCCGCAGGAGGATACAGG
GGTGGTGTCCCTACCCTGGGCTTTTGACACATGAAGCTGTTCCTTTTCGA
CCCTTACCCCGGAGAAGAAGCCGAGCAAGAAGTTTGGTATTTTTGTTGCA
TGCGGAGGGGATGGACCACAGGTGTTTTGTTGGATGCTGAGGAAAAAGTC
TGCAATGTTTAAAGTCGATTGGCAAAACGATGAAAGATTGCGTTGCATAG
ATGCATCGTGAGACATGAGGAATATTTCGAGAGTAGATCCATCTTGAGAT
ACGAGCGCGGTTCGAATGTTTGAGCCATGTTTTTCCGACGCGGCGGAGTA
TGTATAGAGAACTGAATGCGTTTTGGATGCCGCGCTTAGTTTTGTATTGG
TGCGTCGCCCGTTGTTCTTGAAGTCGTTTTGAAGCATTAAGTACCCACGG
AATTCTTGAAGTAGAACCACAAATTGTTTTTACCACACTG
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protein sequence of EsuBft113_20a-0001

>EsuBft113_20 ID=EsuBft113_20|Name=EsuBft113_20a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=258bp
MLKEARGAEYVSLQPAILKVAVEDGLLFGSGKILQYQKTVAKDDSRTYFL
PNPEAVGLVSQVSALVAAGKVRLGEVGTDYVGMQEYLEALAWPKDTDTGL
RFGFPGKTNRSWGWLGGDSLDERLAWEDEDEEEDDEWEGEGGEGDGGRAV
SPTGEVVGLKSRQDLKDLVREGGTIVFVSSRSCRACKYLTPFYRKLARRQ
EQVLFGRVDASTHPELARQLGLTAVPSFVTFREGEVVTSKATSSKKNIEK
LVEELLYE
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mRNA from alignment at Scaffold_637:637220..640614-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft113_20a-0001 ID=EsuBft113_20a-0001|Name=EsuBft113_20a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3395bp|location=Sequence derived from alignment at Scaffold_637:637220..640614- (Ectocarpus subulatus male Bft15b)
TTTATTTTGGTTCGCCCGCGGGGGTTACGCGCGCTTGCTTGTGTCTCTTC
AGGGGGGCGCGAGCGCTGGGGGCAGACCTAGCGGTGGACTTTCGGAAGGA
GAGCTACAGCGACGTGGTGCAAGACTTTAGCGCCGTGGTCGACACTCTCG
GGAGGGAGAAGGAAGGGCCGCAGGACATGCTGAAGGAGGCAAGAGGGGCC
GAGTACGTCTCCCTTCAACCCGCCATCCTGAAGGTAAATGAAGACAACTC
GGTTTGCAGAGCATTCTGTTGTTGTTCAACGATTGATTTTTATTGCGCGT
GTACCCGGTACAAATAGTAGTCCCTGCGAATACAGCTCGTAGAGCCGAAA
GCCCTCTTGTCGGAGGTGTAAGCACAGCAATGTTTTTTGGTGTGTTGTGG
CAGTTGACTTGCGTGGATTTCGTTTATTTTACAAGACGAAGAAATAGTGG
TAAGGGTATGTTCACTTAGTTGCAGGCCTGTTTTTACTCTGGAAAGGCAT
ACATGGACCACGGTATATCCGAGAAACACGCCGATCGCTCAAACTAGAAT
GCATTCGGGGCGAAGCCACGCTCGTCAGTCAAAGACCAGACAGCTTTTGG
CTTTTGTTGCCTAGACTACATAAAGTATACAATCGGCTAAGTCAGAGGTT
GGGGGTTAGGGTTAGGGTCTGCGTGCGCCCTCCCTGCTCTTTTCTTTTCG
TATTAAACTTGCTTGCCTTGCTTAGGGAGTCCAAACACGAGAGTTCGCCC
CACCCCTCTCGTTCTCCGAAGGTGGCAGTGGAAGACGGTCTGCTGTTTGG
GTCGGGTAAGATCTTGCAGTATCAGAAGACCGTCGCGAAGGACGACAGCA
GGACGTACTTCCTCCCGAACCCGGAGGCGGTGGGGCTGGTCTCGCAGGTC
TCGGCGCTGGTTGCCGCGGGGAAAGTGCGGCTAGGGGAGGTCGGCACGGA
CTACGTGGGTATGCAGGAGTACCTGGAGGCTCTGGCCTGGCCCAAGGACA
CCGACACCGGCCTGCGGTAAGAACCGCCCGCAGAGCCGCCACTGCTGCTG
CTGCTTGTTTTTTTTTTTTGTGCTGTGGTCTTCACGATTGAAACCGTTCC
AATCCCTCTACCAAGTACCCTCATCTGTCCGCACTGATATAGTAACACTG
GACGCGGCCGATTCCCGTGGACACAGGCTAGCTTGACCTAAAAGAGGTGT
TCTCAAGATGAAATGGACCCGAAGGGTCCTCAAAACAGTGAACACACTAC
GTTCCTGTTTAAGTATGAGTCAGCCATGCTGCATTTGCACCCGCGCTTGA
CTTCTCTGTTTTTCTTTCTTTGACCCGAAATCTTGTTATCTTGTTTGTGT
TGCAGTGAAGAGTGCATCGGCACGCAACACGAGAAAATGTTTTTCTCACA
ACCAACTCGGGCTGAAAACAAGTAGAAGTACACTCTTTGCACGACGTGGA
CCCCGCTGGGCGTCTCCCGCGACACGAAAGGAGAAGCATGATTGCGCTTC
AGGCACACAAGAAAACGGGAGTCAAGGATGACAGAGCGGTTGTTGCATGA
TGCTTGTGTTATCCGCAACCCATGTACAGCCACTCCTCCTTCTGGCTTGG
CGAGGGGGGGGTGGTATTCTACGTGTATATCAGCTGAGATCAGCAGCCCG
TCCGTCCTTCGGAGGAAATACTCACTCGCGTGTCGCCCACCCGCTCTCGC
TCCAATTATTTGTCAGGTTCGGCTTTCCAGGAAAGACGAACCGGTCTTGG
GGTTGGCTGGGGGGGGATAGTCTCGACGAAAGGCTCGCTTGGGAAGACGA
GGACGAGGAGGAGGACGACGAGTGGGAGGGCGAGGGGGGAGAGGGAGACG
GCGGTAGGGCTGTCTCGCCAACGGGAGAAGTGGTGGGGTTGAAGAGCCGG
CAAGACTTGAAGGACCTCGTGAGGGAAGGGGGAACCATAGTTTTCGTGAG
CTCGAGGAGTTGCCGGGCCTGCAAGTACCTAACGCCGTGAGCATTTCTCG
AATTTGATGAGTTTTATTCGTGCTTGCGTAGGGCTTGGCTCTTTGGGGTC
ACACGTTGAACCGCAGGGACTGTTCCTCGCCGCCGTGCAGCAGCTGAGTT
TGTGTGGCCGGGGTAAAGTTAGAAGCGTCTTCGTTGAGCGCACCGCAGAC
CCTCTTGTGTAGTTGGTTTTGTCGGCTGTTTCGAGGGCGCGCGGCTGAAA
CGGATTGGCACGGCGGTGCAGGTGTGCCGAGTTGGAATATATACCGCCAA
TCCAAGCGGCGAGGAGGCTTTAACCCCTTTTGGGTGCCTGCTTGTCGCGC
CCCCGTCCACCGTCCATTCCATAGTGCCGGTTTCGGTGTGCCAGATTACA
ATGCTATGCGGAAGGCGTGTTCAATGATCATGGTGCTGTTCTGCATGTCC
TCCGACGTCCATCAGCTTCATGACAAAACGACCCCTTAAAAGCGTACAAG
ACGACCCCTGTAGTGTTAAGTATCTTGCCGGAAAACCGTCCCACAATTAC
AGTCCCCATTAACTGCTCTGCGGGCTCCGCATCACCTTGTCTGCTGCCAA
CAGGTTTTACCGCAAGCTGGCGCGTAGACAAGAACAGGTGTTGTTCGGGC
GCGTCGACGCGTCCACTCACCCCGAACTGGCGCGACAACTAGGCCTGACG
GCCGTGCCTTCCTTCGTTACCTTTCGGGAAGGGGAGGTTGTCACGAGCAA
AGCAACAAGTAGCAAGAAAAATATCGAGAAGCTTGTGGAGGAGCTGTTGT
ACGAGTAGGGTCAGGAGGGGGTGGAGGGGGGGGGGGGGGGGGGGGNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGCGTGAGGAATCAACGCCCGTTAGTTGC
TCAGGTACCACGGGGCTGTGTCGGGGGCTATAGGGGCCCCGCAGGAGGAT
ACAGGGGTGGTGTCCCTACCCTGGGCTTTTGACACATGAAGCTGTTCCTT
TTCGACCCTTACCCCGGAGAAGAAGCCGAGCAAGAAGTTTGGTATTTTTG
TTGCATGCGGAGGGGATGGACCACAGGTGTTTTGTTGGATGCTGAGGAAA
AAGTCTGCAATGTTTAAAGTCGATTGGCAAAACGATGAAAGATTGCGTTG
CATAGATGCATCGTGAGACATGAGGAATATTTCGAGAGTAGATCCATCTT
GAGATACGAGCGCGGTTCGAATGTTTGAGCCATGTTTTTCCGACGCGGCG
GAGTATGTATAGAGAACTGAATGCGTTTTGGATGCCGCGCTTAGTTTTGT
ATTGGTGCGTCGCCCGTTGTTCTTGAAGTCGTTTTGAAGCATTAAGTACC
CACGGAATTCTTGAAGTAGAACCACAAATTGTTTTTACCACACTG
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Coding sequence (CDS) from alignment at Scaffold_637:637220..640614-

>EsuBft113_20a-0001 ID=EsuBft113_20a-0001|Name=EsuBft113_20a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=777bp|location=Sequence derived from alignment at Scaffold_637:637220..640614- (Ectocarpus subulatus male Bft15b)
ATGCTGAAGGAGGCAAGAGGGGCCGAGTACGTCTCCCTTCAACCCGCCAT
CCTGAAGGTGGCAGTGGAAGACGGTCTGCTGTTTGGGTCGGGTAAGATCT
TGCAGTATCAGAAGACCGTCGCGAAGGACGACAGCAGGACGTACTTCCTC
CCGAACCCGGAGGCGGTGGGGCTGGTCTCGCAGGTCTCGGCGCTGGTTGC
CGCGGGGAAAGTGCGGCTAGGGGAGGTCGGCACGGACTACGTGGGTATGC
AGGAGTACCTGGAGGCTCTGGCCTGGCCCAAGGACACCGACACCGGCCTG
CGGTTCGGCTTTCCAGGAAAGACGAACCGGTCTTGGGGTTGGCTGGGGGG
GGATAGTCTCGACGAAAGGCTCGCTTGGGAAGACGAGGACGAGGAGGAGG
ACGACGAGTGGGAGGGCGAGGGGGGAGAGGGAGACGGCGGTAGGGCTGTC
TCGCCAACGGGAGAAGTGGTGGGGTTGAAGAGCCGGCAAGACTTGAAGGA
CCTCGTGAGGGAAGGGGGAACCATAGTTTTCGTGAGCTCGAGGAGTTGCC
GGGCCTGCAAGTACCTAACGCCGTTTTACCGCAAGCTGGCGCGTAGACAA
GAACAGGTGTTGTTCGGGCGCGTCGACGCGTCCACTCACCCCGAACTGGC
GCGACAACTAGGCCTGACGGCCGTGCCTTCCTTCGTTACCTTTCGGGAAG
GGGAGGTTGTCACGAGCAAAGCAACAAGTAGCAAGAAAAATATCGAGAAG
CTTGTGGAGGAGCTGTTGTACGAGTAG
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