EsuBft113_19a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft113_19a-0001
Unique Name	EsuBft113_19a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_637	contig	Scaffold_637:633406..636710 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D8LU98
ProteomeId	EsuBft113_19
Protein domains	IPR025870
Protein domains	SignalP-noTM
Protein domains	IPR029068
Owner	apollo_admin@sb-roscoff.fr
Note	lactoylglutathione lyase os:brassica oleracea gemmifera pe:2 sv:1 [Automatic annotation]
Nb exon	2
Max annot lvl	2759\|Eukaryota
Length	1840
Hectar predicted targeting category	other localisation
Evalue	5.16e-272
EggNOG OGs	COG0346@1\|root,KOG2943@2759\|Eukaryota
Date last modified	2016-06-13
Date creation	2016-06-13
Description	methylglyoxal metabolic process
COG category	E

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft113_19a	EsuBft113_19a	Ectocarpus subulatus male Bft15b	gene	Scaffold_637 633406..636710 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft113_19a-0001	EsuBft113_19	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_637 634376..636179 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft113_19a-0001-exon	EsuBft113_19a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_637 633406..633443 +
EsuBft113_19a-0001-exon	agat-exon-5208	Ectocarpus subulatus male Bft15b	exon	Scaffold_637 634338..634481 +
EsuBft113_19a-0001-exon	agat-exon-5209	Ectocarpus subulatus male Bft15b	exon	Scaffold_637 635053..636710 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft113_19a-0001-exon	agat-five_prime_utr-853	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_637 633406..633443 +
EsuBft113_19a-0001-exon	agat-five_prime_utr-854	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_637 634338..634375 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft113_19a-0001-cds	EsuBft113_19a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_637 634376..634481 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft113_19a-0001-exon	agat-three_prime_utr-1333	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_637 636180..636710 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_637:633406..636710+
coding sequence from alignment at Scaffold_637:633406..636710+

spliced messenger RNA

>EsuBft113_19a-0001 ID=EsuBft113_19a-0001|Name=EsuBft113_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1840bp|location=Sequence derived from alignment at Scaffold_637:633406..636710+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGCACACTTTCTACACCCTTTTCGCAAGCGTGGCCCAGGTCGAGCAAGGC
GTGGGCTTGGTTGGCTGGATCACACGATGAAAGCGCGTTCCAGCACATGC
CGCTGCTTGCGATGGGCGCAACTCCTCGTGCTCAGCACGTGCGGAGACAT
TCGTGTCTGGCAAGCGGCGGGCTTCGGGTTAGGAGCCCGGCTTTCTGCGC
CGGTGCAACAAAAGCAGCACACAGCAACGTGTTCGGCGACACAGGTGCTC
ATGTCGGAGTCAAAAGCATCTGATCGGAGCATCGGCAGAAGAGGGGAAGT
TGGAGCTGAGCCTACAGGCAGAGGAGATTTCCTCCGCAATTCCGCCGCGT
TTCTCGCCGGAGGCAGCGCTGCAATCGCGGGGGCAACAACAGCGGGGGCT
GGCTTCCCGAGCGCCGCCGAGGCCATCGGCGACCTATACGAGTTCAAGGA
CCAGGCGCGCTTCGCCCAGCATGCCACCCTTCAGGTGCCGGACATGGCGG
CCGCGCTCAAGTTCTACGTGGAAGGCGTCGGCATGAAGGTGATCCGCACG
CGGGCGGGCCCCCTGTTCAACACGACCGTCGTCGGCTTCGGCCCGGAGGC
GCTCGAGGTGCCACCGTCCTTCGTTTTCGGCGTGAGCTCCACGAACGGGT
ACGGTGGCCACTTTACCCTGGAGCTCAACTCGCAGAAGGAGGAGGCAGGG
GCGGCGGAGGACGGGGAAGAGGACGTCGACTTCTTTTACGACCCCGGAAA
CGGCGTCCAGTTCCTGCAGATCGCGGTCGACTCGTACCGGATATCTCAGG
TGGTCAAGGCAGGGGGAATCATCGAGTCCGGTTACGGGTACCTCCAGGTC
TTGGCTCCAGGAGGGCTTCGGCTGAAGCTCTTGAGCGGCTCGAGACGAGA
CCCTCCCATGTTCCTCGCCGTCAAGGTGAAGGACATGAAGAGGTCGGTGC
AATGGTACACCGACGTCGCTGGGATGACCAAGTTTCCGTTCCCGAGAGCT
CGGGAGGCCGGCTCGCCCTTCGAGCCGGAGCAGCCCGCGGGAAGTGTCTT
CATGGCCTACGAGGGGGAGGCGTTCGGAGTCGTCCTTATCCCCGCCGCGA
AGGGGGACCGGATCAACCCGGGCAGCGTCGTGTCCGTCGCAATTCTGGCG
GAGGACGTCGAGAAGATAGCGGAAAGCCTGGGGGGGGAGGTTAGCGTGGA
CAGCTTGAGAGGAGGGGGAAGGTCCGTCGCGGTCGCGGACCCGGACGGAT
ACGGAATAAAGTTCGTGGAGTACAGCGACTGGAGGGGGCAGCTCCCCCGC
TTGGTGTAGGCCGTCCTATCGGCGTGATGGCAGTTGCGGTCCACTTTAAG
TTTTTAGGGCAGATAATTTGTCCGAAGATTGTGGTGTACGCTCTCGGTGG
GGGGGGGAGGGGCGTCCCAACACAGCGGCAGACATGCAGAGTTGTGTAAA
ATAGTTGATCATCAAAACCTTTGGGAAAGTGAATCCCCCCCCGATAGACC
ATGCAGTATTAGTATTTGTGGTCAGTTTTTAGGCTAGCTTGGGTGTTAAT
TGGTTGTTAGACGTACCATTTACAGAGAAGCTTGATGCTGCACGATCAGA
TCTTGAGCTCTTGCAGTTCAGGTCGAGAGGAAGGGTACCAACCACCGGCC
CGTTCCAGGTCATCGGGGGGCAATTCGTTGGGTACAGTTTCACGTTCTAC
GTGCGTTGGCGTGAGATCGAAAGGTGGTTGAGGTTACTCACGGCGTCCGC
GCCGGTCCTTCCTCGCATACACAGGCAATTGAATTGGAGTGTTGACGGCA
CCAATAGTCTACACACTTTTCAACATGTACGCAACCATCC

protein sequence of EsuBft113_19a-0001

>EsuBft113_19 ID=EsuBft113_19|Name=EsuBft113_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=410bp
MKARSSTCRCLRWAQLLVLSTCGDIRVWQAAGFGLGARLSAPVQQKQHTA
TCSATQVLMSESKASDRSIGRRGEVGAEPTGRGDFLRNSAAFLAGGSAAI
AGATTAGAGFPSAAEAIGDLYEFKDQARFAQHATLQVPDMAAALKFYVEG
VGMKVIRTRAGPLFNTTVVGFGPEALEVPPSFVFGVSSTNGYGGHFTLEL
NSQKEEAGAAEDGEEDVDFFYDPGNGVQFLQIAVDSYRISQVVKAGGIIE
SGYGYLQVLAPGGLRLKLLSGSRRDPPMFLAVKVKDMKRSVQWYTDVAGM
TKFPFPRAREAGSPFEPEQPAGSVFMAYEGEAFGVVLIPAAKGDRINPGS
VVSVAILAEDVEKIAESLGGEVSVDSLRGGGRSVAVADPDGYGIKFVEYS
DWRGQLPRLV

mRNA from alignment at Scaffold_637:633406..636710+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft113_19a-0001 ID=EsuBft113_19a-0001|Name=EsuBft113_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3305bp|location=Sequence derived from alignment at Scaffold_637:633406..636710+ (Ectocarpus subulatus male Bft15b)
TGCACACTTTCTACACCCTTTTCGCAAGCGTGGCCCAGGTAAGAGCGCAA
TTGTCGCTCTCAGGCTGTTGCAGGGCAGGGGCTCACAATCTCGGCCAGGC
TGTTGTAAGGAGTTTGCTTCATGCACCGTCCATGGTTCATGAGCACTACA
AGTAACGACAAAGAGATGGCGCCCTCTCTCGCGCTCATACACAGGTATAC
TACTACTGTAGTCTGCTGTCTTCTACTCCGTCTCTCTTTCTCTGCCTATC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCNNNNNNNNNNNNNNNNNNNNNNNTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTGTCACACACACACACGCACACGCGCGCGCG
CGCGCGAGGTTCGTTCCCAGGGTAGAGAATTGCCACGCCGTGATTTTTTG
CGATAAATTTATGTATACAATCGCTCTGTGACTTCAGTATCGAGCGGCAA
TTGGTCGTGGTTGTACCAAACGGCCAGAGTGAGTCTGCCACACAACGGAA
CGCAGCAACCACGCAACCTGAACACCACACAAATGGCTGTTAGGTCAAAC
TGCGGTTAGCCGATCCACCCCGCTGCCATGTACGTGGCCCTGCTGTTTCA
TTCTCGTTGTTGCTCTCCTACTGCTGTGCGAACCTCCCCTTTGGTGGGAC
CCAAGGCCACCGTCCCCCTCAACTCAAGACTTACTCCGACAAAGCTGTTT
CTGGACTTGTAGACCACGCTAGTAGCTGTGAAGCATCTATAAACAACACT
GTTTGGTTTGGCATACTGCCGTATGTTGAGCCTGCCCGCTTTTCATCGCT
GGAGAGGGCATAATATCCATCATTGCATATGCATAAAGTAAGCAGCAAGA
ATGACGCCGTTCAAAACGTCTCGGAAACTCAGGTCGAGCAAGGCGTGGGC
TTGGTTGGCTGGATCACACGATGAAAGCGCGTTCCAGCACATGCCGCTGC
TTGCGATGGGCGCAACTCCTCGTGCTCAGCACGTGCGGAGACATTCGTGT
CTGGCAAGCGGCGGGCTTCGGGTTAGGTGAGGCAAGGGCCCTACAACTAG
TAAGTTTCTCTCTCGAAGCAGGTTTGAAAGTCATCCCACGACCTTGGGCG
CCAGCAGTGGCAACCTACAAGTATTACCGGTGTTGTAGGTATGCGGCGAT
ATCGGTCAACCCTTCTCGGTAAGGTGGTCTAGAGCGAAATACCCCGTTCA
GTCTCTCGCAGTGGATGCAGGCCGCCGTCGCTTTCTTGCACGCTGTGGCG
TTAGCGAGTGACGGGAACCTACGTTTACTTGAGATCGCCCCTCGATCGTT
CCCCTTGTTTTTCGTATTTGAACCGTACCTTTTCCCCTATGTGTTGTAGA
TGTTTCCCTTGAGAACAGTCCACTGCTGCCGAACGCTGGGGCGACGTTTT
ACGGGGCTGGGCGGGGCCTCTCTCACCCAGCAAACATGCTAGTATGTACA
AAGATTCGGCGGGGAGGGCCTCTTTCAATCCCCTTCGCTCTTCCCCAAGC
GTCGGAGATGACTTACCGGTTTTCTTCCCTGTCTCCGTCGTTTTTTATTC
GTCCTTCCTCCCGTTGTTTGTCCTTTTTCAAACGGTGTGCTCTGCAGGAG
CCCGGCTTTCTGCGCCGGTGCAACAAAAGCAGCACACAGCAACGTGTTCG
GCGACACAGGTGCTCATGTCGGAGTCAAAAGCATCTGATCGGAGCATCGG
CAGAAGAGGGGAAGTTGGAGCTGAGCCTACAGGCAGAGGAGATTTCCTCC
GCAATTCCGCCGCGTTTCTCGCCGGAGGCAGCGCTGCAATCGCGGGGGCA
ACAACAGCGGGGGCTGGCTTCCCGAGCGCCGCCGAGGCCATCGGCGACCT
ATACGAGTTCAAGGACCAGGCGCGCTTCGCCCAGCATGCCACCCTTCAGG
TGCCGGACATGGCGGCCGCGCTCAAGTTCTACGTGGAAGGCGTCGGCATG
AAGGTGATCCGCACGCGGGCGGGCCCCCTGTTCAACACGACCGTCGTCGG
CTTCGGCCCGGAGGCGCTCGAGGTGCCACCGTCCTTCGTTTTCGGCGTGA
GCTCCACGAACGGGTACGGTGGCCACTTTACCCTGGAGCTCAACTCGCAG
AAGGAGGAGGCAGGGGCGGCGGAGGACGGGGAAGAGGACGTCGACTTCTT
TTACGACCCCGGAAACGGCGTCCAGTTCCTGCAGATCGCGGTCGACTCGT
ACCGGATATCTCAGGTGGTCAAGGCAGGGGGAATCATCGAGTCCGGTTAC
GGGTACCTCCAGGTCTTGGCTCCAGGAGGGCTTCGGCTGAAGCTCTTGAG
CGGCTCGAGACGAGACCCTCCCATGTTCCTCGCCGTCAAGGTGAAGGACA
TGAAGAGGTCGGTGCAATGGTACACCGACGTCGCTGGGATGACCAAGTTT
CCGTTCCCGAGAGCTCGGGAGGCCGGCTCGCCCTTCGAGCCGGAGCAGCC
CGCGGGAAGTGTCTTCATGGCCTACGAGGGGGAGGCGTTCGGAGTCGTCC
TTATCCCCGCCGCGAAGGGGGACCGGATCAACCCGGGCAGCGTCGTGTCC
GTCGCAATTCTGGCGGAGGACGTCGAGAAGATAGCGGAAAGCCTGGGGGG
GGAGGTTAGCGTGGACAGCTTGAGAGGAGGGGGAAGGTCCGTCGCGGTCG
CGGACCCGGACGGATACGGAATAAAGTTCGTGGAGTACAGCGACTGGAGG
GGGCAGCTCCCCCGCTTGGTGTAGGCCGTCCTATCGGCGTGATGGCAGTT
GCGGTCCACTTTAAGTTTTTAGGGCAGATAATTTGTCCGAAGATTGTGGT
GTACGCTCTCGGTGGGGGGGGGAGGGGCGTCCCAACACAGCGGCAGACAT
GCAGAGTTGTGTAAAATAGTTGATCATCAAAACCTTTGGGAAAGTGAATC
CCCCCCCGATAGACCATGCAGTATTAGTATTTGTGGTCAGTTTTTAGGCT
AGCTTGGGTGTTAATTGGTTGTTAGACGTACCATTTACAGAGAAGCTTGA
TGCTGCACGATCAGATCTTGAGCTCTTGCAGTTCAGGTCGAGAGGAAGGG
TACCAACCACCGGCCCGTTCCAGGTCATCGGGGGGCAATTCGTTGGGTAC
AGTTTCACGTTCTACGTGCGTTGGCGTGAGATCGAAAGGTGGTTGAGGTT
ACTCACGGCGTCCGCGCCGGTCCTTCCTCGCATACACAGGCAATTGAATT
GGAGTGTTGACGGCACCAATAGTCTACACACTTTTCAACATGTACGCAAC
CATCC

Coding sequence (CDS) from alignment at Scaffold_637:633406..636710+

>EsuBft113_19a-0001 ID=EsuBft113_19a-0001|Name=EsuBft113_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1233bp|location=Sequence derived from alignment at Scaffold_637:633406..636710+ (Ectocarpus subulatus male Bft15b)
ATGAAAGCGCGTTCCAGCACATGCCGCTGCTTGCGATGGGCGCAACTCCT
CGTGCTCAGCACGTGCGGAGACATTCGTGTCTGGCAAGCGGCGGGCTTCG
GGTTAGGAGCCCGGCTTTCTGCGCCGGTGCAACAAAAGCAGCACACAGCA
ACGTGTTCGGCGACACAGGTGCTCATGTCGGAGTCAAAAGCATCTGATCG
GAGCATCGGCAGAAGAGGGGAAGTTGGAGCTGAGCCTACAGGCAGAGGAG
ATTTCCTCCGCAATTCCGCCGCGTTTCTCGCCGGAGGCAGCGCTGCAATC
GCGGGGGCAACAACAGCGGGGGCTGGCTTCCCGAGCGCCGCCGAGGCCAT
CGGCGACCTATACGAGTTCAAGGACCAGGCGCGCTTCGCCCAGCATGCCA
CCCTTCAGGTGCCGGACATGGCGGCCGCGCTCAAGTTCTACGTGGAAGGC
GTCGGCATGAAGGTGATCCGCACGCGGGCGGGCCCCCTGTTCAACACGAC
CGTCGTCGGCTTCGGCCCGGAGGCGCTCGAGGTGCCACCGTCCTTCGTTT
TCGGCGTGAGCTCCACGAACGGGTACGGTGGCCACTTTACCCTGGAGCTC
AACTCGCAGAAGGAGGAGGCAGGGGCGGCGGAGGACGGGGAAGAGGACGT
CGACTTCTTTTACGACCCCGGAAACGGCGTCCAGTTCCTGCAGATCGCGG
TCGACTCGTACCGGATATCTCAGGTGGTCAAGGCAGGGGGAATCATCGAG
TCCGGTTACGGGTACCTCCAGGTCTTGGCTCCAGGAGGGCTTCGGCTGAA
GCTCTTGAGCGGCTCGAGACGAGACCCTCCCATGTTCCTCGCCGTCAAGG
TGAAGGACATGAAGAGGTCGGTGCAATGGTACACCGACGTCGCTGGGATG
ACCAAGTTTCCGTTCCCGAGAGCTCGGGAGGCCGGCTCGCCCTTCGAGCC
GGAGCAGCCCGCGGGAAGTGTCTTCATGGCCTACGAGGGGGAGGCGTTCG
GAGTCGTCCTTATCCCCGCCGCGAAGGGGGACCGGATCAACCCGGGCAGC
GTCGTGTCCGTCGCAATTCTGGCGGAGGACGTCGAGAAGATAGCGGAAAG
CCTGGGGGGGGAGGTTAGCGTGGACAGCTTGAGAGGAGGGGGAAGGTCCG
TCGCGGTCGCGGACCCGGACGGATACGGAATAAAGTTCGTGGAGTACAGC
GACTGGAGGGGGCAGCTCCCCCGCTTGGTGTAG