EsuBft113_17a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft113_17a-0001
Unique Name	EsuBft113_17a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_637	contig	Scaffold_637:606632..610461 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Status	Manually annotated
Seed ortholog	2880.D8LUA2
ProteomeId	EsuBft113_17
Protein domains	IPR015424
Protein domains	IPR002129
Protein domains	SignalP-TM
Protein domains	SignalP-noTM
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	IPR015421
Protein domains	SIGNAL_PEPTIDE_H_REGION
Protein domains	SIGNAL_PEPTIDE_C_REGION
Protein domains	PTHR11999
Protein domains	G3DSA
Protein domains	SIGNAL_PEPTIDE
Protein domains	SIGNAL_PEPTIDE_N_REGION
Protein domains	IPR010977
Owner	apollo_admin@sb-roscoff.fr
Note	aromatic-l-amino-acid decarboxylase os:rattus norvegicus gn:ddc pe:1 sv:1 [Automatic annotation]
Nb exon	6
Max annot lvl	2759\|Eukaryota
Length	1208
Hectar predicted targeting category	signal peptide
Evalue	3.79e-227
EggNOG OGs	COG0076@1\|root,KOG0628@2759\|Eukaryota
Date last modified	2016-10-20
Date creation	2016-06-13
KEGG rclass	RC00299
KEGG ko	ko:K01593
KEGG Reaction	R00685,R00699,R00736,R02080,R02701,R04909
KEGG Pathway	ko00350,ko00360,ko00380,ko00901,ko00950,ko00965,ko01100,ko01110,ko04726,ko04728,ko05030,ko05031,ko05034,map00350,map00360,map00380,map00901,map00950,map00965,map01100,map01110,map04726,map04728,map05030,map05031,map05034
KEGG Module	M00037,M00042
EC	4.1.1.105,4.1.1.28
Description	Trp decarboxylase
Description	decarboxylase
COG category	E
BRITE	ko00000,ko00001,ko00002,ko01000,ko04147
Note	This enzyme catalyses the formation of tryptamin from Trp
Note	Delage L., annotator

Cross References

External references for this mRNA


Database	Accession
GO	0071363
GO	0004058
GO	0042416
GO	0046219
GO	0030170
GO	0009611
GO	0005829
GO	0043025
GO	0008021
GO	0010259
GO	0015842
GO	0019904
GO	0071312
GO	0046684
GO	0052314
GO	0070062
GO	0006559
GO	1990055
GO	0030424
GO	0042427
GO	0007623
PMID	25120558
GO	0033076
GO	0035690
GO	0016597
EC	4.1.1.28

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft113_17a	EsuBft113_17a	Ectocarpus subulatus male Bft15b	gene	Scaffold_637 606632..610461 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft113_17a-0001	EsuBft113_17	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_637 606989..610461 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft113_17a-0001-exon	agat-exon-5183	Ectocarpus subulatus male Bft15b	exon	Scaffold_637 606632..606736 +
EsuBft113_17a-0001-exon	agat-exon-5188	Ectocarpus subulatus male Bft15b	exon	Scaffold_637 606933..607117 +
EsuBft113_17a-0001-exon	EsuBft113_17a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_637 607649..607852 +
EsuBft113_17a-0001-exon	agat-exon-5187	Ectocarpus subulatus male Bft15b	exon	Scaffold_637 608310..608419 +
EsuBft113_17a-0001-exon	agat-exon-5186	Ectocarpus subulatus male Bft15b	exon	Scaffold_637 609016..609149 +
EsuBft113_17a-0001-exon	agat-exon-5185	Ectocarpus subulatus male Bft15b	exon	Scaffold_637 609361..609572 +
EsuBft113_17a-0001-exon	agat-exon-5184	Ectocarpus subulatus male Bft15b	exon	Scaffold_637 610204..610461 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft113_17a-0001-exon	agat-five_prime_utr-851	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_637 606632..606736 +
EsuBft113_17a-0001-exon	agat-five_prime_utr-852	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_637 606933..606988 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft113_17a-0001-cds	EsuBft113_17a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_637 606989..607117 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_637:606632..610461+
coding sequence from alignment at Scaffold_637:606632..610461+

spliced messenger RNA

>EsuBft113_17a-0001 ID=EsuBft113_17a-0001|Name=EsuBft113_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1208bp|location=Sequence derived from alignment at Scaffold_637:606632..610461+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGGACGACAGACAGAGACAGAGGTTCGTGTGCGTCTATGCACGTTC
TCTTGCCTAAGGCATACCAAGAGAGAGAGGATAGAGGGCAAGACTAGGGT
GGCAGTTGCGCAGGTTTTGGCACCGCGTCGTACGCAGGTACGGAGGAGTA
CGGGCACGATCATGACGAGACGAAGAACAACGTTGCTTGCGCTGCTGCTG
GGGTGGTGCGCGGTTGACGCATCAGCGAAGGGCGTAGTCCAGGCTTTGGC
CGGGTTAGTGGTTGGAGCGGTGGCTGGCCGGTTCTCTCAGAGGGTCCCAG
GGCTGCGGCCAGCAGGTTCAGATGAACCGCGGCGGCCCTTGTTCGAAGCG
GAGGGCTGGGAGGGCGAGGCCGACGTTTCCGACTGGGAGCCGTTTCGACT
GCTGGGGCGGTCGATGGTTGACTACATCGCCGACTACTACCAAGGGGTCG
AGTCCCTCCCCGTCCGGGCGATCGTGGAACCTGGGTATCTAAAGAAACGG
GTGACACAGCGAGAGTTTCCGACGAAAGGTGAGGTTTGGAGCGACATCAT
GGCGGACGTGGAGTCCCACATCATGCCCGGGATTACCCACTGGCAACACC
CAAGGTTCTTCGCGTGGTATCCGGCCGCTTCTTCCCCTCCCGCCATCTTG
GGCGACATGCTGGCTTCGATGTTCAACGTGATAGGCTTCAGCTGGGAGGC
CAGCCCCGCGTCGACAGAGTTGGAGACCGTGGTCCTCGATCAGCTCGGGA
GGGCGGTGGATCTCCCCGAGGCTTTCTTGTCGAGCGGGGGCGGGGGGGGC
GGGGTCATCCAGGGGTCTGCGAGCGAAGGGACCTTAGTGGCCGTGGTGGC
GGCGAGGACGAGGGCTCTCAAGCACATGCGGAGGCGGAGCCCTGCCGGAG
TAAGCGATAGCGAGCTGCTGGCGAAGATGACCCTTTACGCCAGCGACCAG
GCGCACTCGTCCGTGCAGAAGGCGGCCAACATTGCCGGGCTCGGGTCCAA
CCTGCGCCTCATTCCCACCAGCGGGAGCTGCGAGGACGGGCAGCGGTGCT
ACACCCTGGACGCCGCCGAGCTGTCGGAGGCCATGCGGGAGGACGAGGCC
GCCGGCCTGACGCCGGTGTTCGTGAGCGCGAACGTCGGCTCGACGAACAC
TTGCGCCGTGGATCCCGTTCGCTCGCTCGGGGAAGCTTGCCGCAGGTTTG
GTGGCTGA

protein sequence of EsuBft113_17a-0001

>EsuBft113_17 ID=EsuBft113_17|Name=EsuBft113_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=348bp
MTRRRTTLLALLLGWCAVDASAKGVVQALAGLVVGAVAGRFSQRVPGLRP
AGSDEPRRPLFEAEGWEGEADVSDWEPFRLLGRSMVDYIADYYQGVESLP
VRAIVEPGYLKKRVTQREFPTKGEVWSDIMADVESHIMPGITHWQHPRFF
AWYPAASSPPAILGDMLASMFNVIGFSWEASPASTELETVVLDQLGRAVD
LPEAFLSSGGGGGGVIQGSASEGTLVAVVAARTRALKHMRRRSPAGVSDS
ELLAKMTLYASDQAHSSVQKAANIAGLGSNLRLIPTSGSCEDGQRCYTLD
AAELSEAMREDEAAGLTPVFVSANVGSTNTCAVDPVRSLGEACRRFGG

mRNA from alignment at Scaffold_637:606632..610461+

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft113_17a-0001 ID=EsuBft113_17a-0001|Name=EsuBft113_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3830bp|location=Sequence derived from alignment at Scaffold_637:606632..610461+ (Ectocarpus subulatus male Bft15b)
ATGACGGACGACAGACAGAGACAGAGGTTCGTGTGCGTCTATGCACGTTC
TCTTGCCTAAGGCATACCAAGAGAGAGAGGATAGAGGGCAAGACTAGGGT
GGCAGGTGCGAGTCATAGCAGCATCGAATATCCATCACAGCAGCAGCAGT
GACTACAGGTCCAGCGGCGGGACTTTTTTCGTTTTGCGGCCGCCGAGGTT
AACGACGTAACACCCAGCATACCGCAGACACTCGACAGAGGACATGTTGC
ATTGTTGAGTGTTTCTCTCTCTCTCTCAGTGTTGCTGTTCCTTCCCCTTA
GTTGCGCAGGTTTTGGCACCGCGTCGTACGCAGGTACGGAGGAGTACGGG
CACGATCATGACGAGACGAAGAACAACGTTGCTTGCGCTGCTGCTGGGGT
GGTGCGCGGTTGACGCATCAGCGAAGGGCGTAGTCCAGGCTTTGGCCGGG
TTAGTGGTTGGAGCGGTGGCTGGCCGGTTCTCTCAGGTGTGATGTGTTCC
TGCACGCGGAAGTTGCATAGTAAGCACCAGCGGTTCGCATAGTGTACCGG
CGACCATATATCCCTGCACCCTTGTGCCTGCATGCATTGTCTAAAAAGCC
TGCAGTGCCATCGCTTCAACGGTTGCAGCGTTTTGTAGAGTTTGTAGAGT
AGCAGACTAGAGATCCAGCACGGCCCTTCCTGCCGTTGTCTGCGTAGTCT
AGACAACTTGGTCCGGAGCTTGATTTGCCTTGTTGTGAATAATAGCCACA
GCAGTGTCTAAACCTTTCATCTCGTGGTCGCCAGGTTTTACATGCAAACT
ATTATTATAGTTGACTCGACCTCTGCATATCGTAAAATACCCCAAGCGGC
ACTGCCCTTACTAAATAGACATCTTAGATTACAGTGCTAAACCTCGTCGA
CTACAGGACTTTGCTTGCCGCACATTTTCAGTGTACGAATACATCTACAG
CAAAAAACACAGTAGTCTACTGTACCCGTTCCATCCTTGCCGCTTCGGGT
TGAACGTGCTGTGGCAGAGGGTCCCAGGGCTGCGGCCAGCAGGTTCAGAT
GAACCGCGGCGGCCCTTGTTCGAAGCGGAGGGCTGGGAGGGCGAGGCCGA
CGTTTCCGACTGGGAGCCGTTTCGACTGCTGGGGCGGTCGATGGTTGACT
ACATCGCCGACTACTACCAAGGGGTCGAGTCCCTCCCCGTCCGGGCGATC
GTGGAACCTGGGTATCTAAAGGTGTGCTCTCTCTGCAGGGGTGGAAACCG
TTCGGTTTGCTCGTGTGGGTGTGGCCCAGGCGGGGCGTGCATAGCCAAAG
GATCACGTAGTGGACGACGTCAACTCTCGTGCACATCCGCGGAGTGACCC
GAACCAGAACAATAGTATGGACGAAAACTTGGAGAAGCATGGAAAATCGG
CACTTGCACGGCGACTACTTTCGGTGCCCGTGGCCTACTACGCGGTGTAT
TCTCTCCCGTCGTTGATGGTTCTCCTGGGCAAGCATGTACCCCAAAGCTG
GTTTAACGACCGAGAGCGTGCGATCCACAACGCCGCGCGGGCGCACGTCT
TCGAAAGCAGTTCTTGACACGTAAAATCAGACCCATTGTCAACTCCGTTC
AAGCTTTCTTTCAATGCTTGAGAGGAATCCTATCTCATTTGCACTGCCAC
ACCCCGCCGCCGCCGCCGCCTCAACCAGAAACGGGTGACACAGCGAGAGT
TTCCGACGAAAGGTGAGGTTTGGAGCGACATCATGGCGGACGTGGAGTCC
CACATCATGCCCGGGATTACCCACTGGCAACACCCAAGGTGTGTGCCCAG
CGGTCGCTACGTTGCTGGTGCTGTGACACTTGAAGTACCGCTACACAATA
ACCATGCTGAACCTAGAACACGTGCTGGCGGCCCGACAATTCTGCACGCG
GTCACACTTGGAGTGCCAGAGAGAACGCTATGTATTCGAGTCCGACCTCT
TATGGATCTATCGCGAACGGCGGAAGCGGTCGCGCTTCTTCAGTCACTTT
TCTGCAGTCCACGAAATCTCGTAAATCCGATGCCGAGTGAAGACTCGATT
AACACAATCGGCAGGTGTGTACATCCTCAACGATGTGCTGTCCCGGTGCT
CCTTGTTCAACCCAGTGGCACGGTCTTGAAACGATTTTTAGCCGAGCCGT
CTCTTTGTCCGTGGGGCCGTAAGAAAATCTCCATTGCCCTTGGCCGCGAA
AAGGTATACTTGTACGGCTGACCCTACGAAGAAGTTCCCCCGTGCAGACG
TGTCTCGGTGGCATTCTGCGGAGCCCCTGCACGCTTCTCTAGGTAGACAG
GTTCTCGTTGTCGTTCATATGCGTGTAGACGCCCGTCGTGCTTCTGACTC
CTCGCACAATCCCACCGGCCGACTCTCTTGACAGGTTCTTCGCGTGGTAT
CCGGCCGCTTCTTCCCCTCCCGCCATCTTGGGCGACATGCTGGCTTCGAT
GTTCAACGTGATAGGCTTCAGCTGGGAGGCCAGCCCCGCGTCGACAGAGT
TGGAGACCGTGGTCCTCGGTGAGTTAGTTCATGGTGGCGGAGCCCCCTTA
TTCAGACATACGAAGTAGGTTAGAACATTGCATTGGTTCCCGGCCATCGC
ACGTGGTACAAGTGCTTCATTGGGAACGTCAAGTGACGGTGTCGGTTCCC
TCGACGATACGCTTGTGCGGATGGATACCATCCCCCTTTCGTGTACCCGT
GGTTGGTGCCCCGTCTCTTGTGCCGGTAGATCAGCTCGGGAGGGCGGTGG
ATCTCCCCGAGGCTTTCTTGTCGAGCGGGGGCGGGGGGGGCGGGGTCATC
CAGGGGTCTGCGAGCGAAGGGACCTTAGTGGCCGTGGTGGCGGCGAGGAC
GAGGGCTCTCAAGCACATGCGGAGGCGGAGCCCTGCCGGAGTAAGCGATA
GCGAGCTGCTGGCGAAGATGACCCTTTACGCCAGCGACCAGGTTCGTCCT
CTTTTAGTGCGTTTGCGCATGTGTGTGGGTGTCTACTTGCCGGTGGCCAG
CACAACATAGACGACGGGCCGTATTGGTGCTTGGCGCAAGACGTTCTGTG
GGTGAAGTTGTACGTGTCGCAAGCACGCCACGGACGCAGCACATGTGTAT
TTTTCTGGTCCCACCGATGACCTGGCTTTCACTGCTTCAGAGTCCCGCGC
GGGTACTGGTAGCCCCAACCTACTGGCCTTGAGCGCTTTTTTTACTGAAG
GTCGTGAGTGTGTTCAGAGCCTAATACCTACTGTAGCATTTTCTCAAAAC
CACAGCGTGGCCCTCTGCCGGTCGCGTTTCACGGCCTCGCCCGACACACA
CCAAACAGACAGACACGCGTATTCACCCACGATGCACCACCATCACCGCT
CACCGTACCTCCTCCCCCCCGCGCCCCCGGTTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCCACATCGGGGCCAGGCGCACTCGTCCGTGCAGAAGGCGGCCA
ACATTGCCGGGCTCGGGTCCAACCTGCGCCTCATTCCCACCAGCGGGAGC
TGCGAGGACGGGCAGCGGTGCTACACCCTGGACGCCGCCGAGCTGTCGGA
GGCCATGCGGGAGGACGAGGCCGCCGGCCTGACGCCGGTGTTCGTGAGCG
CGAACGTCGGCTCGACGAACACTTGCGCCGTGGATCCCGTTCGCTCGCTC
GGGGAAGCTTGCCGCAGGTTTGGTGGCTGA

Coding sequence (CDS) from alignment at Scaffold_637:606632..610461+

>EsuBft113_17a-0001 ID=EsuBft113_17a-0001|Name=EsuBft113_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1047bp|location=Sequence derived from alignment at Scaffold_637:606632..610461+ (Ectocarpus subulatus male Bft15b)
ATGACGAGACGAAGAACAACGTTGCTTGCGCTGCTGCTGGGGTGGTGCGC
GGTTGACGCATCAGCGAAGGGCGTAGTCCAGGCTTTGGCCGGGTTAGTGG
TTGGAGCGGTGGCTGGCCGGTTCTCTCAGAGGGTCCCAGGGCTGCGGCCA
GCAGGTTCAGATGAACCGCGGCGGCCCTTGTTCGAAGCGGAGGGCTGGGA
GGGCGAGGCCGACGTTTCCGACTGGGAGCCGTTTCGACTGCTGGGGCGGT
CGATGGTTGACTACATCGCCGACTACTACCAAGGGGTCGAGTCCCTCCCC
GTCCGGGCGATCGTGGAACCTGGGTATCTAAAGAAACGGGTGACACAGCG
AGAGTTTCCGACGAAAGGTGAGGTTTGGAGCGACATCATGGCGGACGTGG
AGTCCCACATCATGCCCGGGATTACCCACTGGCAACACCCAAGGTTCTTC
GCGTGGTATCCGGCCGCTTCTTCCCCTCCCGCCATCTTGGGCGACATGCT
GGCTTCGATGTTCAACGTGATAGGCTTCAGCTGGGAGGCCAGCCCCGCGT
CGACAGAGTTGGAGACCGTGGTCCTCGATCAGCTCGGGAGGGCGGTGGAT
CTCCCCGAGGCTTTCTTGTCGAGCGGGGGCGGGGGGGGCGGGGTCATCCA
GGGGTCTGCGAGCGAAGGGACCTTAGTGGCCGTGGTGGCGGCGAGGACGA
GGGCTCTCAAGCACATGCGGAGGCGGAGCCCTGCCGGAGTAAGCGATAGC
GAGCTGCTGGCGAAGATGACCCTTTACGCCAGCGACCAGGCGCACTCGTC
CGTGCAGAAGGCGGCCAACATTGCCGGGCTCGGGTCCAACCTGCGCCTCA
TTCCCACCAGCGGGAGCTGCGAGGACGGGCAGCGGTGCTACACCCTGGAC
GCCGCCGAGCTGTCGGAGGCCATGCGGGAGGACGAGGCCGCCGGCCTGAC
GCCGGTGTTCGTGAGCGCGAACGTCGGCTCGACGAACACTTGCGCCGTGG
ATCCCGTTCGCTCGCTCGGGGAAGCTTGCCGCAGGTTTGGTGGCTGA