EsuBft113_15a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft113_15a-0001
Unique NameEsuBft113_15a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_637contigScaffold_637:570434..572513 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog112098.XP_008617777.1
ProteomeIdEsuBft113_15
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsTRANSMEMBRANE
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsTMhelix
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2759|Eukaryota
Length89
Hectar predicted targeting categorysignal anchor
Evalue1.72e-07
EggNOG OGs2E6J9@1|root,2SD8M@2759|Eukaryota
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft113_15aEsuBft113_15aEctocarpus subulatus male Bft15bgeneScaffold_637 570434..572513 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft113_15a-0001-exonEsuBft113_15a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_637 570434..570639 +
EsuBft113_15a-0001-exonagat-exon-5173Ectocarpus subulatus male Bft15bexonScaffold_637 571830..572513 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft113_15a-0001-exonagat-five_prime_utr-849Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_637 570434..570512 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft113_15a-0001-cdsEsuBft113_15a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_637 570513..570639 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft113_15a-0001-exonagat-three_prime_utr-1330Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_637 571958..572513 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft113_15a-0001EsuBft113_15Ectocarpus subulatus male Bft15bpolypeptideScaffold_637 570513..571957 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft113_15a-0001 ID=EsuBft113_15a-0001|Name=EsuBft113_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=890bp|location=Sequence derived from alignment at Scaffold_637:570434..572513+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TCTCTTGGCACACCCTCCTGTCAAGGCTCCAAGCTATTCCAATTGTTGAC
AAAAGGGGTCGAGAACCCAGGTGAGAGGTATGGGGGACGATGGCTGCAGT
GCTTCCGAACTCCGACGTCGGTATCACATGGGAGGAGATCTAAAGGATGA
TTCTTTGACCGCACCACAGCTTCGAGCCCGGTACGGTATCAAGAAGAACA
CGGCAGAATTCAGCACCAAGACCGGCGGAGCGCGGAGCGGGGATATGACG
TCGTCCGTTTGGCCATTGGCGGCCGTGCTTGCTCTGGTATTGGTAGCAAT
CCTTTTCGCGGTGCGCACAGGCGGCAGCAAATAGTCCGCGTTGTAGACAG
TAGACCAACTCTGCGCGTGCTTGGGCCAGCTGAGAAGGTTTTGGTTGCGT
CGCAGCGCGTGACGTCTGGCTCGAATAATATTGAAAGTCGTTGTCAGCGC
GAGGGCAACGACGGGTTGTTGGTATTATCATTCTGTTTGCGAATGTATAC
ATATCTGTATTGTGAACAGGAGGAAGAATCTGGTATTTCCACTGTGCCAC
GGGAGCAAGCTATAGGTCTAAACCCTCTCACGCGCGGAGATACGCTTGTT
GTTGATATGGAGGACGCTATTCCTATTTTGAGTTATATATTTCTCGGGTA
CATCGGCGTTGTGAGCTTCAAGGTTTGAAAGCTGTCGCGTTTGTTACTCG
GGAGACGGGGGGGGGATGTCGAGACGTCTATTACTTGGGCGACGCAAATA
GAAAATTAGTGGCAATATGCTCGCCACGTTGAAGACGTCGTCCGCGTTGA
TCGGTTCTGAGAACGATGCAAAGGTGCGCAATGAAATATTTGCTATCTAG
TTTCTTCATGGTTAGCACCCCCTGTCGAGTTTCAAAGTCC
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protein sequence of EsuBft113_15a-0001

>EsuBft113_15 ID=EsuBft113_15|Name=EsuBft113_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=84bp
MGDDGCSASELRRRYHMGGDLKDDSLTAPQLRARYGIKKNTAEFSTKTGG
ARSGDMTSSVWPLAAVLALVLVAILFAVRTGGSK
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mRNA from alignment at Scaffold_637:570434..572513+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft113_15a-0001 ID=EsuBft113_15a-0001|Name=EsuBft113_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2080bp|location=Sequence derived from alignment at Scaffold_637:570434..572513+ (Ectocarpus subulatus male Bft15b)
TCTCTTGGCACACCCTCCTGTCAAGGCTCCAAGCTATTCCAATTGTTGAC
AAAAGGGGTCGAGAACCCAGGTGAGAGGTATGGGGGACGATGGCTGCAGT
GCTTCCGAACTCCGACGTCGGTATCACATGGGAGGAGATCTAAAGGATGA
TTCTTTGACCGCACCACAGCTTCGAGCCCGGTACGGTATCAAGAAGAACA
CGGCAGGTGCGTCCGCAACCCGATGCAGTTACTTGTATGATGATGGGAGT
TGCTCGGAGAAGTTCTGACTCTGTGTGTAGAAGGGGGCATGTTTGTGGTG
AAGGGCCTGTAGGGTTCAAACCAAGCCGAAGGAATACGCACTACGGTTGT
ATGTAGTCTACACCGTGTGGCGAACAAGTTCTGATCACAATCGCGTTTTG
TTGAATAGACTCAAGAGTACCGTAGTGCTGTAGTCCACACTCGTTATGGG
TCATTTTGATTATTTGTGACTTTGCGGAAGTGTGTTAGGGTTAGTAGCCT
GTGGCCAAGGACAACGTCCACTTCAGTTAGACCGAGTACGCCACGATGTA
CTGCGCAGAGATCGAAAGAGTTCTACACTGCTGTCGTCTAAAAGTTCCGA
CAAATGGATAACGCCACCCGAGCGGCTTCCATACTTGCACCACCAGCAAC
GCCATACACTTTCATCGAACGTTGTACCGCGTCCGCAGATGTAGTCTTAG
GCTTGGTGAATGTACCAACGGCGAAATTATTGATTATGTAGTCTAGACGG
GGAATTCCTCACTCAGGTACGTTTTGGACCGCTGTTGGCAGGTCTACGGT
ATCCTTCTTCAATAGATTTACATGTCTAATATCAAAGGTGGGTATACTTA
ACGACAGATAATGCCGTTCTCCGTTCGGTTGGTGTTAAGAAGCCCGATGA
CCATTAGACTACGTGGTGTAGATCATCGTGCTTCTTAACAAGAGTTAATG
CCCGAGTCTGTCAAGCTTTCTTTCAAGCCACGAACACGTCCCCCCGGGGT
TGCCATCCTTCCCTCTGATCAGCGCTGTCTTGCCCGATCCATGATCGGTG
TACCATGTCCAAAGAGAGACTCATCGGCATATTTTGTGAAGTCCACGACT
TTTCCCATAGACATAGGGCGCAAATAACATCCTGAAAGGATATAGCGCTC
AAAGGGAGATTCGAACCCCGGGCATTAGCTTTTGTTAAGAAGCACGATGA
CCCAACCTCGATTAGATCTATGCCTATGAGGGATACTTTGCGTGGAAGGT
CCGTCTAACCATATCGATCAGAGTCTTTAAGGAAGTGTGGTGTTGAACAG
CACAGCAACCACCTACTTGGCTCTTCAGCTTTTGGTTCTGACTTGACTAT
TATCCTGCCCTCAAACTGCGATGCTGCTTGCTATTAATCAAACCAGAATT
CAGCACCAAGACCGGCGGAGCGCGGAGCGGGGATATGACGTCGTCCGTTT
GGCCATTGGCGGCCGTGCTTGCTCTGGTATTGGTAGCAATCCTTTTCGCG
GTGCGCACAGGCGGCAGCAAATAGTCCGCGTTGTAGACAGTAGACCAACT
CTGCGCGTGCTTGGGCCAGCTGAGAAGGTTTTGGTTGCGTCGCAGCGCGT
GACGTCTGGCTCGAATAATATTGAAAGTCGTTGTCAGCGCGAGGGCAACG
ACGGGTTGTTGGTATTATCATTCTGTTTGCGAATGTATACATATCTGTAT
TGTGAACAGGAGGAAGAATCTGGTATTTCCACTGTGCCACGGGAGCAAGC
TATAGGTCTAAACCCTCTCACGCGCGGAGATACGCTTGTTGTTGATATGG
AGGACGCTATTCCTATTTTGAGTTATATATTTCTCGGGTACATCGGCGTT
GTGAGCTTCAAGGTTTGAAAGCTGTCGCGTTTGTTACTCGGGAGACGGGG
GGGGGATGTCGAGACGTCTATTACTTGGGCGACGCAAATAGAAAATTAGT
GGCAATATGCTCGCCACGTTGAAGACGTCGTCCGCGTTGATCGGTTCTGA
GAACGATGCAAAGGTGCGCAATGAAATATTTGCTATCTAGTTTCTTCATG
GTTAGCACCCCCTGTCGAGTTTCAAAGTCC
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Coding sequence (CDS) from alignment at Scaffold_637:570434..572513+

>EsuBft113_15a-0001 ID=EsuBft113_15a-0001|Name=EsuBft113_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=255bp|location=Sequence derived from alignment at Scaffold_637:570434..572513+ (Ectocarpus subulatus male Bft15b)
ATGGGGGACGATGGCTGCAGTGCTTCCGAACTCCGACGTCGGTATCACAT
GGGAGGAGATCTAAAGGATGATTCTTTGACCGCACCACAGCTTCGAGCCC
GGTACGGTATCAAGAAGAACACGGCAGAATTCAGCACCAAGACCGGCGGA
GCGCGGAGCGGGGATATGACGTCGTCCGTTTGGCCATTGGCGGCCGTGCT
TGCTCTGGTATTGGTAGCAATCCTTTTCGCGGTGCGCACAGGCGGCAGCA
AATAG
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