EsuBft113_14a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft113_14a-0001
Unique NameEsuBft113_14a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_637contigScaffold_637:558359..559916 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft113_14
Protein domainsPTHR32134
Protein domainsIPR008615
Ownerapollo_admin@sb-roscoff.fr
Notef-box and fnip repeat-containing protein l60 os:acanthamoeba polyphaga mimivirus gn:mimi [Automatic annotation]
Nb exon3
Length1023
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-13_004770.3
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft113_14aEsuBft113_14aEctocarpus subulatus male Bft15bgeneScaffold_637 558359..559916 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft113_14a-0001-exonagat-exon-5171Ectocarpus subulatus male Bft15bexonScaffold_637 558359..558377 +
EsuBft113_14a-0001-exonagat-exon-5172Ectocarpus subulatus male Bft15bexonScaffold_637 558568..558681 +
EsuBft113_14a-0001-exonEsuBft113_14a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_637 559027..559916 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft113_14a-0001-cdsEsuBft113_14a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_637 558359..558377 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft113_14a-0001EsuBft113_14Ectocarpus subulatus male Bft15bpolypeptideScaffold_637 558359..559916 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft113_14a-0001 ID=EsuBft113_14a-0001|Name=EsuBft113_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1023bp|location=Sequence derived from alignment at Scaffold_637:558359..559916+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACAAGGACAGCGTTGGCGCTCGTTATGACGTGGGCACTTCTGATGG
AGGATCTGCTGCAGAGTTCTGCCATTGGGCTGTGGTCCGAAACAAAATAT
CGGCGGCGACAAGCAGCAAGCCTGGGATCGGTGCAACTATCGTTGGGCAT
AAATTCAACCAGCCCATTGCTTATGCCGTGTGGCCGGCCTCCCTGCAGCA
ACTATCGTTTGGGCATAAATTCGACCAGTCCATTGCTTATGCCGTGTGGC
CGGCCTCCCTGCAGCAGCTTTCGTTTAGGGGATCCTTCAACCAGCCAATT
GTCGGAGTGGTGTGGTCAGCCTCCGTGAAGCAGGTCTCGTTTGCGGATGA
CTTCAACCAGCCGATCGCCCAAGTCGTGTGGCCGGCCTCCCTGCAACAAC
CAACTTTTGGTTGTGAATTCAATCAACCCATCACTGGGGTCGTGTGGCCG
GCCTCCCTGCGGCAGCTATCGTTCGGGGGATCATTTACCCAGCCCATCGC
CGAGGTCGTGTGGCCGGCCGTCCTGCAGCAGCTATCGTTTGGGCATAGAT
TCGACCAGCCCATTGTCGGAGTGGTGTGGCCGGCCTCCCTGCAATGGCTA
TCGTTTGGTCACAAATTCAACCAGCCCATCGTCGAAGCCGTGTGGCCGGC
CTCCCTGCAGCAGCAATCAATTGGTTGGAATTTCAACCAGCCCATCGTCG
AAGCCGTGTGGCCGGCCCTCCTGCAGCAGCTATCGTTTGGCTGGGAAGTC
AACCAGCCCATCGTCGGCGTTGTGTGGCCGGCCTCCCTGCAATGGCTATC
GTTTGGGATCAACTTTAACCAGCCCATCCACGGCGTCGTGTGGCCGGCCT
CCCTGCAGCAGCTACGGTTTGGTTACGAATTTTACCAGCCCATCGACGGC
GTCGTGTGGTCGACCTCCCTGCAGCAGTTATCGTCTGGTTACGAATTCAA
CCAGCCGATCACGGGTGTTGCGTGGCCGGCCTCCTTACGAAGTGTGACTC
GTAAAGGATTTAGTCTGTTGTGA
back to top

protein sequence of EsuBft113_14a-0001

>EsuBft113_14 ID=EsuBft113_14|Name=EsuBft113_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=340bp
MNKDSVGARYDVGTSDGGSAAEFCHWAVVRNKISAATSSKPGIGATIVGH
KFNQPIAYAVWPASLQQLSFGHKFDQSIAYAVWPASLQQLSFRGSFNQPI
VGVVWSASVKQVSFADDFNQPIAQVVWPASLQQPTFGCEFNQPITGVVWP
ASLRQLSFGGSFTQPIAEVVWPAVLQQLSFGHRFDQPIVGVVWPASLQWL
SFGHKFNQPIVEAVWPASLQQQSIGWNFNQPIVEAVWPALLQQLSFGWEV
NQPIVGVVWPASLQWLSFGINFNQPIHGVVWPASLQQLRFGYEFYQPIDG
VVWSTSLQQLSSGYEFNQPITGVAWPASLRSVTRKGFSLL
back to top

mRNA from alignment at Scaffold_637:558359..559916+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft113_14a-0001 ID=EsuBft113_14a-0001|Name=EsuBft113_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1558bp|location=Sequence derived from alignment at Scaffold_637:558359..559916+ (Ectocarpus subulatus male Bft15b)
ATGAACAAGGACAGCGTTGGTATGCGTCTACGTAGGAGCTACAGCTTGTG
TCGCTGGGATTTTATAGGGTGTACAAAAGTGTTCAAACTTTACACGTGCG
TGTTCATCAACGAACGCCTCCTAGCTTGCGGTCTCCTCACGAATCACACA
CCACACCCAACAAGCACAGTCGAGAGGTTTGCATCTCGAGTCGCGTGCCT
GCTGTACAGGCGCTCGTTATGACGTGGGCACTTCTGATGGAGGATCTGCT
GCAGAGTTCTGCCATTGGGCTGTGGTCCGAAACAAAATATCGGCGGCGAC
AAGCAGCAAGCCTGGGATCGGTGGTATGGCCTCAAAGGCTTCAACGGCTG
GTATTTAATGTGAATATGCCCGTGTACACAGCGTCGTGGCCTGCCTCCTT
GCGGCAACTTTCGTTTGGAGATTGGTTCGACCAGCCCATCGGCGGCGTCG
TGTGGCCGGCCTTCTTGCGGCAGCTTTCATTTGGGGAACTGTTTAATCAG
CCCATTGTCGGAGTCGTGTGGCCATCTTCCTTGCAGCAGCGATGGCTTGG
GGATGGATTCGACCAGCCCATCGTCGGAGTCGTGTGGTCGGCCTCCCTGC
AACAGCTACTGTTTGGGATCGAATTCAACCAGTCCATTACTAATACCGTG
TGGTCGGCCTCCCTGCAGCAACTATCGTTGGGCATAAATTCAACCAGCCC
ATTGCTTATGCCGTGTGGCCGGCCTCCCTGCAGCAACTATCGTTTGGGCA
TAAATTCGACCAGTCCATTGCTTATGCCGTGTGGCCGGCCTCCCTGCAGC
AGCTTTCGTTTAGGGGATCCTTCAACCAGCCAATTGTCGGAGTGGTGTGG
TCAGCCTCCGTGAAGCAGGTCTCGTTTGCGGATGACTTCAACCAGCCGAT
CGCCCAAGTCGTGTGGCCGGCCTCCCTGCAACAACCAACTTTTGGTTGTG
AATTCAATCAACCCATCACTGGGGTCGTGTGGCCGGCCTCCCTGCGGCAG
CTATCGTTCGGGGGATCATTTACCCAGCCCATCGCCGAGGTCGTGTGGCC
GGCCGTCCTGCAGCAGCTATCGTTTGGGCATAGATTCGACCAGCCCATTG
TCGGAGTGGTGTGGCCGGCCTCCCTGCAATGGCTATCGTTTGGTCACAAA
TTCAACCAGCCCATCGTCGAAGCCGTGTGGCCGGCCTCCCTGCAGCAGCA
ATCAATTGGTTGGAATTTCAACCAGCCCATCGTCGAAGCCGTGTGGCCGG
CCCTCCTGCAGCAGCTATCGTTTGGCTGGGAAGTCAACCAGCCCATCGTC
GGCGTTGTGTGGCCGGCCTCCCTGCAATGGCTATCGTTTGGGATCAACTT
TAACCAGCCCATCCACGGCGTCGTGTGGCCGGCCTCCCTGCAGCAGCTAC
GGTTTGGTTACGAATTTTACCAGCCCATCGACGGCGTCGTGTGGTCGACC
TCCCTGCAGCAGTTATCGTCTGGTTACGAATTCAACCAGCCGATCACGGG
TGTTGCGTGGCCGGCCTCCTTACGAAGTGTGACTCGTAAAGGATTTAGTC
TGTTGTGA
back to top

Coding sequence (CDS) from alignment at Scaffold_637:558359..559916+

>EsuBft113_14a-0001 ID=EsuBft113_14a-0001|Name=EsuBft113_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1023bp|location=Sequence derived from alignment at Scaffold_637:558359..559916+ (Ectocarpus subulatus male Bft15b)
ATGAACAAGGACAGCGTTGGCGCTCGTTATGACGTGGGCACTTCTGATGG
AGGATCTGCTGCAGAGTTCTGCCATTGGGCTGTGGTCCGAAACAAAATAT
CGGCGGCGACAAGCAGCAAGCCTGGGATCGGTGCAACTATCGTTGGGCAT
AAATTCAACCAGCCCATTGCTTATGCCGTGTGGCCGGCCTCCCTGCAGCA
ACTATCGTTTGGGCATAAATTCGACCAGTCCATTGCTTATGCCGTGTGGC
CGGCCTCCCTGCAGCAGCTTTCGTTTAGGGGATCCTTCAACCAGCCAATT
GTCGGAGTGGTGTGGTCAGCCTCCGTGAAGCAGGTCTCGTTTGCGGATGA
CTTCAACCAGCCGATCGCCCAAGTCGTGTGGCCGGCCTCCCTGCAACAAC
CAACTTTTGGTTGTGAATTCAATCAACCCATCACTGGGGTCGTGTGGCCG
GCCTCCCTGCGGCAGCTATCGTTCGGGGGATCATTTACCCAGCCCATCGC
CGAGGTCGTGTGGCCGGCCGTCCTGCAGCAGCTATCGTTTGGGCATAGAT
TCGACCAGCCCATTGTCGGAGTGGTGTGGCCGGCCTCCCTGCAATGGCTA
TCGTTTGGTCACAAATTCAACCAGCCCATCGTCGAAGCCGTGTGGCCGGC
CTCCCTGCAGCAGCAATCAATTGGTTGGAATTTCAACCAGCCCATCGTCG
AAGCCGTGTGGCCGGCCCTCCTGCAGCAGCTATCGTTTGGCTGGGAAGTC
AACCAGCCCATCGTCGGCGTTGTGTGGCCGGCCTCCCTGCAATGGCTATC
GTTTGGGATCAACTTTAACCAGCCCATCCACGGCGTCGTGTGGCCGGCCT
CCCTGCAGCAGCTACGGTTTGGTTACGAATTTTACCAGCCCATCGACGGC
GTCGTGTGGTCGACCTCCCTGCAGCAGTTATCGTCTGGTTACGAATTCAA
CCAGCCGATCACGGGTGTTGCGTGGCCGGCCTCCTTACGAAGTGTGACTC
GTAAAGGATTTAGTCTGTTGTGA
back to top