EsuBft113_12a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft113_12a-0001
Unique NameEsuBft113_12a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_637contigScaffold_637:547232..548574 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft113_12
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length99
Hectar predicted targeting categoryother localisation
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft113_12aEsuBft113_12aEctocarpus subulatus male Bft15bgeneScaffold_637 547232..548574 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft113_12a-0001-exonagat-exon-5170Ectocarpus subulatus male Bft15bexonScaffold_637 547232..547675 +
EsuBft113_12a-0001-exonEsuBft113_12a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_637 548023..548574 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft113_12a-0001-cdsEsuBft113_12a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_637 547232..547675 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft113_12a-0001-exonagat-three_prime_utr-1329Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_637 548053..548574 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft113_12a-0001EsuBft113_12Ectocarpus subulatus male Bft15bpolypeptideScaffold_637 547232..548052 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft113_12a-0001 ID=EsuBft113_12a-0001|Name=EsuBft113_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=996bp|location=Sequence derived from alignment at Scaffold_637:547232..548574+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCATGTGCGGAAGGTGAACTGTGCGCTCAACAGGATAAGACGCCGCA
GGCCCCACACGGCCACCCTTGCAAGGGAGGATGTGGNAATTGCGGCAGCA
TGTTTGGCGACAACGAACAGCACCGCATCTGCAGTGCGTGCGTCGCCAAG
GACGGCAAGCGCAAGGCGCCAGCAGCTGACACCGGTGGAAGGGGACAATC
TAAACGCCCGAAGGTCACGAATGGGGGGAATAAGAAGTTTCAGCCTTCTC
GTAAGGGGCCTCGTGCGCGGCCGGATTTAGACGCCAAGCTTGAGATGCTG
AAGCTCATGGATGCCAAGGTCACTCATGAGCAGATAGCGGACCGCTTCGC
GTGCTCGGTACTGCTGGTCCGGGATGTGAAGAAAAGCCGGCAGAAATACG
CTCGTGCGCGGCCGGATTTAGACGCCAAGCTTGAGATGCTGAAGGCGGAC
ATGGGAGAATTTGTCGCGACGTAGCGAGGATGCGGGTACAGCTGTAGCAG
TGGTTGTTTTCTTGCGGTGCGCTGCCTGTTTTTGTTTTGTATTATTGTGT
TTTGTTGCAACATGGAAGGGGGTGCGCCAGGAAGACACGAGAGAATTTGT
CGCGACGCAGCAAGGGCGGGGGCTACAGCTGTAGTTGTGTGCTTTTTTTT
AATTTTTCTTTGGTGCGCTTATAAATTGTTTTGTTTCTTTTGATTTTCAT
TTTTCAACATTGAAGGAGGGTAACAAAGGGGAAAATATAGCCTTGTACGA
ACGAGAGCATTTCAAGCAGTTTGTGCCGGTCACAGCCTACTCGGGTGCAT
GATGTGTGTTTCCCTTTCGCCGTCGACTAGTCTTGGTGAGGCACTGCTGC
TGTAGCCCGAAATGCAACGATCTTATTTTACAAAACTTTTGTGGGCTCGA
CAGACAGGGTGAAACCGCACATGTCGCGGGAAAGAAAGTCTGCCCAGGCC
TACACTAGAACTTCACATAACAGCAGTGTCGATCCATTTCGTACTA
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protein sequence of EsuBft113_12a-0001

>EsuBft113_12 ID=EsuBft113_12|Name=EsuBft113_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=157bp
MPCAEGELCAQQDKTPQAPHGHPCKGGCGNCGSMFGDNEQHRICSACVAK
DGKRKAPAADTGGRGQSKRPKVTNGGNKKFQPSRKGPRARPDLDAKLEML
KLMDAKVTHEQIADRFACSVLLVRDVKKSRQKYARARPDLDAKLEMLKAD
MGEFVAT
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mRNA from alignment at Scaffold_637:547232..548574+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft113_12a-0001 ID=EsuBft113_12a-0001|Name=EsuBft113_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1343bp|location=Sequence derived from alignment at Scaffold_637:547232..548574+ (Ectocarpus subulatus male Bft15b)
ATGCCATGTGCGGAAGGTGAACTGTGCGCTCAACAGGATAAGACGCCGCA
GGCCCCACACGGCCACCCTTGCAAGGGAGGATGTGGNAATTGCGGCAGCA
TGTTTGGCGACAACGAACAGCACCGCATCTGCAGTGCGTGCGTCGCCAAG
GACGGCAAGCGCAAGGCGCCAGCAGCTGACACCGGTGGAAGGGGACAATC
TAAACGCCCGAAGGTCACGAATGGGGGGAATAAGAAGTTTCAGCCTTCTC
GTAAGGGGCCTCGTGCGCGGCCGGATTTAGACGCCAAGCTTGAGATGCTG
AAGCTCATGGATGCCAAGGTCACTCATGAGCAGATAGCGGACCGCTTCGC
GTGCTCGGTACTGCTGGTCCGGGATGTGAAGAAAAGCCGGCAGAAATACG
CTCGTGCGCGGCCGGATTTAGACGCCAAGCTTGAGATGCTGAAGGTACGC
TACTTCTGCCGGCTTTTCTTCACATCCCGGACCAGCAGTACCGAGCACGC
GAAGCGGTCCGCTATCTGCTCATGAGTGACCTTGGCATCCATGAGCTTCA
GCATCTCAAGCTTGGCGTCTAAATCCGGCCGCGCACGAGGCCCCTTACGA
GAAGGCTGAAACTTCTTATTCCCCCCATTCGTGACCTTCGGGAGTTTAGA
TTGTCCCCTTCCACCGGTGTCAGCTGCTTCGGCGTCCTGGAAGCGGCAGC
AGAGGCGAGTGGCAACGGAGAAGCGGCGCTCTATCTAGCGAAAGCGAAGA
TGGCGACGATAGTAGCGCATTCCGCTACGCGGGTGCGCCAGGCGGACATG
GGAGAATTTGTCGCGACGTAGCGAGGATGCGGGTACAGCTGTAGCAGTGG
TTGTTTTCTTGCGGTGCGCTGCCTGTTTTTGTTTTGTATTATTGTGTTTT
GTTGCAACATGGAAGGGGGTGCGCCAGGAAGACACGAGAGAATTTGTCGC
GACGCAGCAAGGGCGGGGGCTACAGCTGTAGTTGTGTGCTTTTTTTTAAT
TTTTCTTTGGTGCGCTTATAAATTGTTTTGTTTCTTTTGATTTTCATTTT
TCAACATTGAAGGAGGGTAACAAAGGGGAAAATATAGCCTTGTACGAACG
AGAGCATTTCAAGCAGTTTGTGCCGGTCACAGCCTACTCGGGTGCATGAT
GTGTGTTTCCCTTTCGCCGTCGACTAGTCTTGGTGAGGCACTGCTGCTGT
AGCCCGAAATGCAACGATCTTATTTTACAAAACTTTTGTGGGCTCGACAG
ACAGGGTGAAACCGCACATGTCGCGGGAAAGAAAGTCTGCCCAGGCCTAC
ACTAGAACTTCACATAACAGCAGTGTCGATCCATTTCGTACTA
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Coding sequence (CDS) from alignment at Scaffold_637:547232..548574+

>EsuBft113_12a-0001 ID=EsuBft113_12a-0001|Name=EsuBft113_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=474bp|location=Sequence derived from alignment at Scaffold_637:547232..548574+ (Ectocarpus subulatus male Bft15b)
ATGCCATGTGCGGAAGGTGAACTGTGCGCTCAACAGGATAAGACGCCGCA
GGCCCCACACGGCCACCCTTGCAAGGGAGGATGTGGNAATTGCGGCAGCA
TGTTTGGCGACAACGAACAGCACCGCATCTGCAGTGCGTGCGTCGCCAAG
GACGGCAAGCGCAAGGCGCCAGCAGCTGACACCGGTGGAAGGGGACAATC
TAAACGCCCGAAGGTCACGAATGGGGGGAATAAGAAGTTTCAGCCTTCTC
GTAAGGGGCCTCGTGCGCGGCCGGATTTAGACGCCAAGCTTGAGATGCTG
AAGCTCATGGATGCCAAGGTCACTCATGAGCAGATAGCGGACCGCTTCGC
GTGCTCGGTACTGCTGGTCCGGGATGTGAAGAAAAGCCGGCAGAAATACG
CTCGTGCGCGGCCGGATTTAGACGCCAAGCTTGAGATGCTGAAGGCGGAC
ATGGGAGAATTTGTCGCGACGTAG
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