EsuBft1138_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1138_8a-0001
Unique NameEsuBft1138_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_478contigScaffold_478:244732..248697 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G7J2
ProteomeIdEsuBft1138_8
Protein domainsG3DSA
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl2759|Eukaryota
Length283
Hectar predicted targeting categoryother localisation
Evalue6.06e-15
EggNOG OGsKOG2408@1|root,KOG2408@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Descriptionperoxidase activity
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1138_8aEsuBft1138_8aEctocarpus subulatus male Bft15bgeneScaffold_478 244732..248697 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1138_8a-0001-exonagat-exon-89652Ectocarpus subulatus male Bft15bexonScaffold_478 244732..247309 -
EsuBft1138_8a-0001-exonEsuBft1138_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_478 247954..248208 -
EsuBft1138_8a-0001-exonagat-exon-89651Ectocarpus subulatus male Bft15bexonScaffold_478 248692..248697 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1138_8a-0001-exonagat-three_prime_utr-1319Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_478 244732..247213 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1138_8a-0001-cdsEsuBft1138_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_478 247214..247309 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1138_8a-0001EsuBft1138_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_478 247214..248697 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1138_8a-0001 ID=EsuBft1138_8a-0001|Name=EsuBft1138_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2839bp|location=Sequence derived from alignment at Scaffold_478:244732..248697- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCGATCCGAATGTTCGGACCTCGGGGATGGCCTGCTGAGGGGCAA
GGTAACGCGAGAGATCCTCCAGAAGGCCTTCGGGCCGGCGCTCCTGGCTC
TCCTCGAGGAGTTCGCCAAGCAGGAGCAATCGCGCCACTCGTCGTCGTCC
AAGAGGAGAGGCGGGGGCGAGGAGAAGAGGGACGAAGGAAGCCCGGAAGA
CGCGCGGGGGATCACCCTGGATGATCTCGCCGGCACCGACACTGAAGGCG
GAAAGCTTCAGGTGGTGGTTTCCGGGCCGAACGGGTTCGTGTTCTACGTG
GAGTCTATCCTGGCAGAGATGGGAGTCCCTTCCGAAGCAATCGTCTTCCT
CGACTGACGAGTGACCTTAAACCGGCCGGGTTGCTGGTTGCTGTTGTGGT
GGTCGAGTTTGTTTTTTTTTTGTATCCTAATATGATTTGAATGCGACGCT
GTCTCGCACTGAGGTTGTTGTAGGTGTGAGTGTTTTTGTTGTTGTTATTG
TTCACTTTGTTATATGTTTGGGAAGGACCCGATACCACAGCAGTGCTGGT
TTGGTGTCATTTTTCGTTCCAAGTGTTTTTTTGGCGCCCGCAATTAAGAA
ACGCTTGTTTCAGGGCCAGGCTCGAATTTCTGTTGTGGGAACTCAGCGTA
TGTCGTTCGATTTCTGATGTCAAGTTTCTTATTTTTCCTGCGGCCAAATC
CTGCTGAATTTCTTAAATCGGCTTTTTTTTTTTCTCTGCTCACGAGGACT
GGCGGAGAGCACCATCAAAACCGTACAGTAGACAGCATATCGTAGTTCGC
AGCCTGTCTGGTGTGCTGCGCCAGAGCCGGAGCGCCAGAGAGTGCCAGAG
CCGGCAAGGGGCCGGAGGGTGTGCCCCAAAACAACACACTCGTCGTATAA
CCAATAATGCACTTGGGAGGGGGGGGGTAGTGGGAGAGGGGGGAAAGAGC
GAGAGATGGGAGGAGCTGTGAGGTTTTTCTTATTCGACACACTCTCCCGC
AACCCCTCGTTTCTTACGTAATAGGGCGGCAGCGGTCGCCGCTGTTTCTT
GTTGAGACATTTCTTGTTGTGTGACCCAGACTGGGATATGTTTTCTTAAC
CCTATTTTCTTATTTTATGTGGAAAAAAGTAAGCCTCTAATTCTTCAAAA
AAAAAACTTAAAAAAAAATCTCGTTTCTTCATGCGTGCATTTGTCGGGCA
CCAATAGCTCTGTATAAGGAAAACGTGGTGCGATAACATTTTCCCCTTCG
GGGGCCCTTTTGCATCTGTCCTTGGGTTAGCCATGGGTACGCAGAAGGGG
GACAAATAGAGATTTGACGCACGTGTAAGCGAGGAGGGAGGGGGCGCGGA
TCGCCCATGATCGCCGCAAGTTTGCTCTCGTTCGAATGGGGTGCACGCTA
GGGAACCATGACCATTTCGTTTCCGGAGGTGTGCTAGGAAAACCGCCACT
TCATGAGAAGAAGGAGGCTGTTTGTAGATTTCACGGTTTGCACGACATGG
GAGCTGCCTGCCCATCCGGCTCAGGCACATGTACTCCCGTTGCATGTATC
TATACACGGGCGGTCGGAGGGACCGGTCCGTTCATGTGTTAAGTCTTTGA
GCGAGCTACGGGAGGGACATGGCTAAGCACCCTCCCCAGCCCCCATCGAC
CTAAAGTTTGAAACATTCGACATGCTTTTATTTTTGTTGGTGGTTCTTCA
TGGGGACAAGAAGGCTTGATGAGCGAGGGGGGGGTGTGCTCGTCATTCTG
ACCGACGTCTTGAGACCACGGACCATCGCATCTCTCTCTCTGTCTCTCTC
TCTGCAAAGCCGTGTTAAAATGTGTGCTCAGCAGGGAGAACGTTGCTTGT
GGGTGCATGACTAAATGCGGAGAGCGACGCTACATACGGCCCGATTTTGT
TTTTTTTATTGGATGTCGGCTCCAGAACAACGCGTCTCGGTGTGGTACGC
ACACGCACTATTTGTCAGTTGGGCTGTCTACTTTCGAATTCGCCTGTAGT
TAATGAATATTGGTGCGTTTTCTTTCATCTTGTATCGACAACGCCAACCG
TCTTGACCAAAGAATAGTCGCCAGTCTATTTTTTAGCGGGATGAAAAATT
TGTGTGCGTCGTAGTTGTGTTGACGGTATTTCCGCCATGCCCGTGGCTTC
AGTTTTTGGATTGGGTCGAGTGGGGGCTAAAGCTCTTGATTCTCCATAGG
ATTTCAGGCGGCCATGAGCATATCGTGTGTTCGAAGAAAACCGTACGAGC
AGCGGGTGTCGAATTTGAAAAGCGGAGTTTGTCGAATACGAGTAGTAGGT
GCTTCCACCTTCTACCGAACATTGCGGTGGTGGTGGTTAGCTGGTTGGCC
GCGCTTGTATGCCTAGGTTGTTCTGTTTTTTTTTTTTTGTCGGTGTGTCT
GGATCCCCACGCCGTTTTTTTTCTTTGTTTCGGAAAAATGCGCTGCGATC
GATGCGTCGCACATTGTTTCCCTCCTTCGCGTGTGACGGAAACTATACGG
AATATACACCCGCAGGACGCCTAAACTGTAAACAGACGGACCTCGCCTGC
CGTAGGGCAAGAGGTAGTAAATCCTGCCACGTGTGTTTGTTTGGTTTCCC
CAGAAAACACAAAAACCATCATCTGTGAGATGATCTGGATCGGCTATTAT
AGTTAATCTCTCTCTGATGCTATGTGCGTTTTCTGAACGATATCGACCGC
CCTGGACTATTGACGGAAGTCTCTCGGCGGGCTGGGACTACTACGAACGT
GGCAGAAGTTGGTTGGGGAAGTGGAGTTTCTCACAGTTTTGCGCTACTGG
TTTGTGCTTGCTGTCCTCGAGCGGGTCGGACATTTAATC
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protein sequence of EsuBft1138_8a-0001

>EsuBft1138_8 ID=EsuBft1138_8|Name=EsuBft1138_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=118bp
MARSECSDLGDGLLRGKVTREILQKAFGPALLALLEEFAKQEQSRHSSSS
KRRGGGEEKRDEGSPEDARGITLDDLAGTDTEGGKLQVVVSGPNGFVFYV
ESILAEMGVPSEAIVFLD
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mRNA from alignment at Scaffold_478:244732..248697-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1138_8a-0001 ID=EsuBft1138_8a-0001|Name=EsuBft1138_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3966bp|location=Sequence derived from alignment at Scaffold_478:244732..248697- (Ectocarpus subulatus male Bft15b)
ATGGCGGTACGTAGACACAACCGTCCTCGTCTGGTTCTGTTTTGATCATG
GTGCCCTTGCAAGAATATTGCGGTTAGAGCATCTTTCTTACCGCGAAGCC
GGCGCCGTCCCGCTGTTTTTGTGATTTTTCCTAAATTGCTTTGCGACTTC
TTGTTGTCCCGTTCGTCCGCCGAACGATGTGCGGCACAAAACACATTTTC
GAACCATTTGATGGGCCCTATTCCCTGACCCTCAATAACACCAATATCAT
CTAGGCATGCGAATTGGTAGGCGCCCTATCCAAGAACAACTATCCAACTT
GACCATGAAGCTTTTCACCGCGTTGACACGGTAGTTTCACACCATTTGTG
GTGTAAAACCTTCCCTTTTATGCCGTACCTTTTGTTATTGTTTCGTCGAC
CCCCCCCTCTCTGAACCGCTGCGCACCAAAAACCATCAAATCCCGGGCGT
GTGTTTCCCCTCCCCTTCTAAATAACGACAAAACAAAAGCGATCCGAATG
TTCGGACCTCGGGGATGGCCTGCTGAGGGGCAAGGTAACGCGAGAGATCC
TCCAGAAGGCCTTCGGGCCGGCGCTCCTGGCTCTCCTCGAGGAGTTCGCC
AAGCAGGAGCAATCGCGCCACTCGTCGTCGTCCAAGAGGAGAGGCGGGGG
CGAGGAGAAGAGGGACGAAGGAAGCCCGGAAGACGCGCGGGGGATCACCC
TGGATGATCTCGCCGGCACCGACACTGAAGGCGGAAAGCTTCAGGTGCGC
TCGCTCCTCGTGTGTCTATACTTGTCTGCTGTTGCTGTTGTTGGTGGTGG
TGATGGGTGTCCTGCTGCTGCTGCTGCTGCTGCTTGTTTTGCTTGTTCTT
GTTTGGAGAAGAAGCGGCGTTGTGCGTGTGCGCGTTGTGTTGTTTTTTTC
TTTCCCACAGGACTACTGTAGGCGTGTTCTGTGCGTTCTTCGATACGGCC
ATCGATAGCTTGGCAACGTGAACGCGAGGTTTTTGAAGCGGAGACGGGAC
CGATGCCTGTCGCTGGCACAGGGCGTCCGTTGCCAAAAACAAGACGCTCC
TGACCATCCATGTCAAACGTATAGTTTTCCAATACAACGATGCAGTCCAA
TTTGGTGCGTTGTGCTACATGCCCCCCCCCCCCCCCCCCCCCCCCNNNNN
CCCCCCCCCCCCCCCCCCCCCCCTTTACAACGCGAAGAAAATTTGCGCCA
AACCCAAGCATATCCAATCATATCGTCCTACTTGGTTGTAGTCTATGTAC
AAAGTAGCGTCAAATCTGATGGAATCGCATCTTTTTTTTCTTGGTCCAGT
CTGGTCGTGGCCCCCCAAATCTCAATTCACCACGTCTGCATTCATTCACG
TGGTCGTGTTCGAATCCGATGCGGTCATTCCGTTCCAGGTGGTGGTTTCC
GGGCCGAACGGGTTCGTGTTCTACGTGGAGTCTATCCTGGCAGAGATGGG
AGTCCCTTCCGAAGCAATCGTCTTCCTCGACTGACGAGTGACCTTAAACC
GGCCGGGTTGCTGGTTGCTGTTGTGGTGGTCGAGTTTGTTTTTTTTTTGT
ATCCTAATATGATTTGAATGCGACGCTGTCTCGCACTGAGGTTGTTGTAG
GTGTGAGTGTTTTTGTTGTTGTTATTGTTCACTTTGTTATATGTTTGGGA
AGGACCCGATACCACAGCAGTGCTGGTTTGGTGTCATTTTTCGTTCCAAG
TGTTTTTTTGGCGCCCGCAATTAAGAAACGCTTGTTTCAGGGCCAGGCTC
GAATTTCTGTTGTGGGAACTCAGCGTATGTCGTTCGATTTCTGATGTCAA
GTTTCTTATTTTTCCTGCGGCCAAATCCTGCTGAATTTCTTAAATCGGCT
TTTTTTTTTTCTCTGCTCACGAGGACTGGCGGAGAGCACCATCAAAACCG
TACAGTAGACAGCATATCGTAGTTCGCAGCCTGTCTGGTGTGCTGCGCCA
GAGCCGGAGCGCCAGAGAGTGCCAGAGCCGGCAAGGGGCCGGAGGGTGTG
CCCCAAAACAACACACTCGTCGTATAACCAATAATGCACTTGGGAGGGGG
GGGGTAGTGGGAGAGGGGGGAAAGAGCGAGAGATGGGAGGAGCTGTGAGG
TTTTTCTTATTCGACACACTCTCCCGCAACCCCTCGTTTCTTACGTAATA
GGGCGGCAGCGGTCGCCGCTGTTTCTTGTTGAGACATTTCTTGTTGTGTG
ACCCAGACTGGGATATGTTTTCTTAACCCTATTTTCTTATTTTATGTGGA
AAAAAGTAAGCCTCTAATTCTTCAAAAAAAAAACTTAAAAAAAAATCTCG
TTTCTTCATGCGTGCATTTGTCGGGCACCAATAGCTCTGTATAAGGAAAA
CGTGGTGCGATAACATTTTCCCCTTCGGGGGCCCTTTTGCATCTGTCCTT
GGGTTAGCCATGGGTACGCAGAAGGGGGACAAATAGAGATTTGACGCACG
TGTAAGCGAGGAGGGAGGGGGCGCGGATCGCCCATGATCGCCGCAAGTTT
GCTCTCGTTCGAATGGGGTGCACGCTAGGGAACCATGACCATTTCGTTTC
CGGAGGTGTGCTAGGAAAACCGCCACTTCATGAGAAGAAGGAGGCTGTTT
GTAGATTTCACGGTTTGCACGACATGGGAGCTGCCTGCCCATCCGGCTCA
GGCACATGTACTCCCGTTGCATGTATCTATACACGGGCGGTCGGAGGGAC
CGGTCCGTTCATGTGTTAAGTCTTTGAGCGAGCTACGGGAGGGACATGGC
TAAGCACCCTCCCCAGCCCCCATCGACCTAAAGTTTGAAACATTCGACAT
GCTTTTATTTTTGTTGGTGGTTCTTCATGGGGACAAGAAGGCTTGATGAG
CGAGGGGGGGGTGTGCTCGTCATTCTGACCGACGTCTTGAGACCACGGAC
CATCGCATCTCTCTCTCTGTCTCTCTCTCTGCAAAGCCGTGTTAAAATGT
GTGCTCAGCAGGGAGAACGTTGCTTGTGGGTGCATGACTAAATGCGGAGA
GCGACGCTACATACGGCCCGATTTTGTTTTTTTTATTGGATGTCGGCTCC
AGAACAACGCGTCTCGGTGTGGTACGCACACGCACTATTTGTCAGTTGGG
CTGTCTACTTTCGAATTCGCCTGTAGTTAATGAATATTGGTGCGTTTTCT
TTCATCTTGTATCGACAACGCCAACCGTCTTGACCAAAGAATAGTCGCCA
GTCTATTTTTTAGCGGGATGAAAAATTTGTGTGCGTCGTAGTTGTGTTGA
CGGTATTTCCGCCATGCCCGTGGCTTCAGTTTTTGGATTGGGTCGAGTGG
GGGCTAAAGCTCTTGATTCTCCATAGGATTTCAGGCGGCCATGAGCATAT
CGTGTGTTCGAAGAAAACCGTACGAGCAGCGGGTGTCGAATTTGAAAAGC
GGAGTTTGTCGAATACGAGTAGTAGGTGCTTCCACCTTCTACCGAACATT
GCGGTGGTGGTGGTTAGCTGGTTGGCCGCGCTTGTATGCCTAGGTTGTTC
TGTTTTTTTTTTTTTGTCGGTGTGTCTGGATCCCCACGCCGTTTTTTTTC
TTTGTTTCGGAAAAATGCGCTGCGATCGATGCGTCGCACATTGTTTCCCT
CCTTCGCGTGTGACGGAAACTATACGGAATATACACCCGCAGGACGCCTA
AACTGTAAACAGACGGACCTCGCCTGCCGTAGGGCAAGAGGTAGTAAATC
CTGCCACGTGTGTTTGTTTGGTTTCCCCAGAAAACACAAAAACCATCATC
TGTGAGATGATCTGGATCGGCTATTATAGTTAATCTCTCTCTGATGCTAT
GTGCGTTTTCTGAACGATATCGACCGCCCTGGACTATTGACGGAAGTCTC
TCGGCGGGCTGGGACTACTACGAACGTGGCAGAAGTTGGTTGGGGAAGTG
GAGTTTCTCACAGTTTTGCGCTACTGGTTTGTGCTTGCTGTCCTCGAGCG
GGTCGGACATTTAATC
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Coding sequence (CDS) from alignment at Scaffold_478:244732..248697-

>EsuBft1138_8a-0001 ID=EsuBft1138_8a-0001|Name=EsuBft1138_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=357bp|location=Sequence derived from alignment at Scaffold_478:244732..248697- (Ectocarpus subulatus male Bft15b)
ATGGCGCGATCCGAATGTTCGGACCTCGGGGATGGCCTGCTGAGGGGCAA
GGTAACGCGAGAGATCCTCCAGAAGGCCTTCGGGCCGGCGCTCCTGGCTC
TCCTCGAGGAGTTCGCCAAGCAGGAGCAATCGCGCCACTCGTCGTCGTCC
AAGAGGAGAGGCGGGGGCGAGGAGAAGAGGGACGAAGGAAGCCCGGAAGA
CGCGCGGGGGATCACCCTGGATGATCTCGCCGGCACCGACACTGAAGGCG
GAAAGCTTCAGGTGGTGGTTTCCGGGCCGAACGGGTTCGTGTTCTACGTG
GAGTCTATCCTGGCAGAGATGGGAGTCCCTTCCGAAGCAATCGTCTTCCT
CGACTGA
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