EsuBft1138_13a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1138_13a-0001
Unique NameEsuBft1138_13a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_478contigScaffold_478:303574..306083 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1138_13
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length184
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1138_13aEsuBft1138_13aEctocarpus subulatus male Bft15bgeneScaffold_478 303574..306083 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1138_13a-0001EsuBft1138_13Ectocarpus subulatus male Bft15bpolypeptideScaffold_478 305300..306022 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1138_13a-0001-exonEsuBft1138_13a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_478 303574..304699 -
EsuBft1138_13a-0001-exonagat-exon-89664Ectocarpus subulatus male Bft15bexonScaffold_478 304895..305378 -
EsuBft1138_13a-0001-exonagat-exon-89665Ectocarpus subulatus male Bft15bexonScaffold_478 305853..306083 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1138_13a-0001-exonagat-three_prime_utr-1312Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_478 303574..304699 -
EsuBft1138_13a-0001-exonagat-three_prime_utr-1313Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_478 304895..305299 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1138_13a-0001-cdsEsuBft1138_13a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_478 305300..305378 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1138_13a-0001-exonagat-five_prime_utr-836Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_478 306023..306083 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1138_13a-0001 ID=EsuBft1138_13a-0001|Name=EsuBft1138_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1841bp|location=Sequence derived from alignment at Scaffold_478:303574..306083- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TCATCACCCGGGTTGCACGCGGTGGAAAAAGCAAAAAAAAAGGCCCCACG
GGGCTCCGTACATGGTAGCTCAGCAGACACGGTACCCGGGAAGGGGCCAG
CACAAAAAAACTCGCCGCGCCATGCGCGCATGCCACGAGAGCATTACCTT
TGGGGCCAGAGTTCTCAGCACACACAGCCCGGACCGCGACAAAGCCTACG
GAGTACAGGAAGGAGATCACGTTGAACCTCGGAATGTTCTCGCCGAGAGC
GGCGGCGACCTGCAGTGCCTGCCGTCGCCAAGACGATGGTGCAGGTCTCC
GCCAGCCTAGGCTGAGGGTTCGGGATAGAATTCAAGAGTTCAGCATGGAA
GTCAGTGTCTCCCAGCGTTTCCCGCAACTAGAGTTTTCGGTCGAACATAC
GTTTCATCTTTGCAAGCGTGGGGGGTGCCTGCTTGACCTGTTCACGAAGC
AAGAAGACAAGGAGAGGGGTGCCATCAAGCGCCTGCAGCCCCGGAAACGC
AAACAGAGGAAGGATGGCCGTGTTCCTGAACCGACCATGCACTTCAAACG
CCGACCCCTCGACCGCTATTGCACGTCGCCCGAGGCGGTGAAGGCTTTGC
TCGCGGAGGTGATCATTGAAGGGCTTGTACTCGATATGTGCGGTGGGTCT
GGGGACGCCGTGGCAACCACCCTCGCGCGTACCTGCTGTGTCGTTACGAA
CGACGTTCGGAACAGGTCCGCATCAGACACCAGTTTGGATGCCACCGCGC
CCACGTTCGAGAACGATTACCTCTCGAGTGGCGCTCGGCGTCCCGACTGG
GTCGTTACAAGCCCGCCGTACAAAGGAGCAATAGAGTTCGTCAAGGCGGC
GATGGCGGTAGCTGGGCACGGGGTAGCGTTGAAGTTGCCGTTGTCGTTCA
TGGAGCCTTGTGGGGATCGGGGGGGGTGGCTTCAGCAAAACCCGCCCTCG
GTGTGCATTTTCTTGAGGAGGGCTACGTATCAGCCAGCACATGTGCTGAT
GGGGGAATTTTGGGGAGTGTGGTACAAGACGGCATCACGTGATGTGACGA
CGAGGCTGGTGTTTCGCCCTTGAGCAGTGCAGGCGGTTCCCCCTGAATTA
ATTTTATCCAACACCAGTTTCAGCAGTATCCCCAAGCTGTAGTTTCCATA
TTGCACGGATGGGTAGGATCCCTATAGGAAGAAGAAGTTGGTTTTTCGCT
GGCAACAACCGCGGCCGCTTCTGTTGCATGCGGTCTTTTGTTGGTATGGG
TTATATGCCCACGACTTATTTTATGCAGGACTGTTTGTGCTTCTGTTTTG
TCCCCATATTTTGCCTAGCAACAGTGTGAGGTCGGAAGTGGAATTACGAC
ACCAAGCGTCTATGTGTACGTATCTTTTTTATGGCCAGTCGAACCCCCCG
TGTTTTGTAACCAAGAGCACGAAGCACGATGGGAAAATATTGTTAACTCA
CAGCACGTTTTTCATCCCAAACAGGTGTTCAAATTGTATGCCCCGAACCT
AAATTAAACAGACAGAAATTTACGCAACACACACGAACATGACTCAAACA
CTAACTTCTTCACCGAAAGAATACAACTCTACGTCGTAGGCGGGGCGCCC
GCAAGCCGTCAACTCATCTCCGCTGGCATCGAGTCCTGGCAAGTCATCAA
AAAAGTCCTCCTCGATACTCTCAATATCGATATCGTCGCCCTGCATATCC
GCACCATCACCGTACCCCGACATGTCATCCAACTCCGCTGTCAACGGTCT
TTGCTCGGGCGCACCAGGTAGCCTCTGCCCCCTATCTCCCTGCTCTGACG
TGCCATTGCCCGCCCCGGCCCCCGCAGGCGCGTCTGATGTA
back to top

protein sequence of EsuBft1138_13a-0001

>EsuBft1138_13 ID=EsuBft1138_13|Name=EsuBft1138_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=82bp
MVAQQTRYPGRGQHKKTRRAMRACHESITFGARVLSTHSPDRDKAYGVQE
GDHVEPRNVLAESGGDLQCLPSPRRWCRSPPA
back to top

mRNA from alignment at Scaffold_478:303574..306083-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1138_13a-0001 ID=EsuBft1138_13a-0001|Name=EsuBft1138_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2510bp|location=Sequence derived from alignment at Scaffold_478:303574..306083- (Ectocarpus subulatus male Bft15b)
TCATCACCCGGGTTGCACGCGGTGGAAAAAGCAAAAAAAAAGGCCCCACG
GGGCTCCGTACATGGTAGCTCAGCAGACACGGTACCCGGGAAGGGGCCAG
CACAAAAAAACTCGCCGCGCCATGCGCGCATGCCACGAGAGCATTACCTT
TGGGGCCAGAGTTCTCAGCACACACAGCCCGGACCGCGACAAAGCCTACG
GAGTACAGGAAGGAGATCACGTTGAACCTCGGTGAGTGGTTGGTATGTCC
TCGTTATTCTCTTGGAGCGCGTAAGGTGGAGTGCTTTCGTCAAGAGTTTT
TTCCGGCACCCTCCGTAAATGACAGCAGCGCCGTCGCACGAGAAGGTCAT
CTTCAGACGCTAGGTCGGCCCCGAGGAACGAACGAAATCGACTGGCGATT
TCGTTCCCCAGTAGGAATGTGACAAAAGAAGCCTCCAGGGGTTGCCCTAA
TTTTGGATCGCCACTACCTGTGCCGTAGTCGCGACGAATTGAACACCATG
TTCGTGCGGTGTATCTTGCGGATTCTCCACCCCCTGCGTCGGGTCTCGTG
TGTTTGTAGTGAGGGGTAAGGCGGTTGTCACGATGACACCAGCGGAGCTC
ACTCGCACTATGTAAAACTGAGCCTTGGGCCATGTCTAGCAATAGTTCAC
CACTATCAGCATCGCATAAACCATGGGCCGTCCCTGCTGTATTTCCATTT
GGCAGGAATGTTCTCGCCGAGAGCGGCGGCGACCTGCAGTGCCTGCCGTC
GCCAAGACGATGGTGCAGGTCTCCGCCAGCCTAGGCTGAGGGTTCGGGAT
AGAATTCAAGAGTTCAGCATGGAAGTCAGTGTCTCCCAGCGTTTCCCGCA
ACTAGAGTTTTCGGTCGAACATACGTTTCATCTTTGCAAGCGTGGGGGGT
GCCTGCTTGACCTGTTCACGAAGCAAGAAGACAAGGAGAGGGGTGCCATC
AAGCGCCTGCAGCCCCGGAAACGCAAACAGAGGAAGGATGGCCGTGTTCC
TGAACCGACCATGCACTTCAAACGCCGACCCCTCGACCGCTATTGCACGT
CGCCCGAGGCGGTGAAGGCTTTGCTCGCGGAGGTGATCATTGAAGGGCTT
GTACTCGATATGTGCGGTGGGTCTGGGGACGCCGTGGCAACCACCCTCGC
GCGTACCTGCTGTGTCGTTACGAACGACGTTCGGAACAGGTGAGGAGTGG
TGTCGCTCTTTCGTTGCAAGCCTCCTGTGTGGCATTGACTTTTACTCAAA
TGTTTCACTATTAGCTTCGAAAGTTAGCCTCTCCACGCGTTCGTCTCAAG
TTTTGTGTACAGCAGTGTTGTTTGACGTGTTTTGAATAATGCGCACTGCC
TCCTTTCTTGTCACCCCGCTGTTGTCGTCGCAAGGTCCGCATCAGACACC
AGTTTGGATGCCACCGCGCCCACGTTCGAGAACGATTACCTCTCGAGTGG
CGCTCGGCGTCCCGACTGGGTCGTTACAAGCCCGCCGTACAAAGGAGCAA
TAGAGTTCGTCAAGGCGGCGATGGCGGTAGCTGGGCACGGGGTAGCGTTG
AAGTTGCCGTTGTCGTTCATGGAGCCTTGTGGGGATCGGGGGGGGTGGCT
TCAGCAAAACCCGCCCTCGGTGTGCATTTTCTTGAGGAGGGCTACGTATC
AGCCAGCACATGTGCTGATGGGGGAATTTTGGGGAGTGTGGTACAAGACG
GCATCACGTGATGTGACGACGAGGCTGGTGTTTCGCCCTTGAGCAGTGCA
GGCGGTTCCCCCTGAATTAATTTTATCCAACACCAGTTTCAGCAGTATCC
CCAAGCTGTAGTTTCCATATTGCACGGATGGGTAGGATCCCTATAGGAAG
AAGAAGTTGGTTTTTCGCTGGCAACAACCGCGGCCGCTTCTGTTGCATGC
GGTCTTTTGTTGGTATGGGTTATATGCCCACGACTTATTTTATGCAGGAC
TGTTTGTGCTTCTGTTTTGTCCCCATATTTTGCCTAGCAACAGTGTGAGG
TCGGAAGTGGAATTACGACACCAAGCGTCTATGTGTACGTATCTTTTTTA
TGGCCAGTCGAACCCCCCGTGTTTTGTAACCAAGAGCACGAAGCACGATG
GGAAAATATTGTTAACTCACAGCACGTTTTTCATCCCAAACAGGTGTTCA
AATTGTATGCCCCGAACCTAAATTAAACAGACAGAAATTTACGCAACACA
CACGAACATGACTCAAACACTAACTTCTTCACCGAAAGAATACAACTCTA
CGTCGTAGGCGGGGCGCCCGCAAGCCGTCAACTCATCTCCGCTGGCATCG
AGTCCTGGCAAGTCATCAAAAAAGTCCTCCTCGATACTCTCAATATCGAT
ATCGTCGCCCTGCATATCCGCACCATCACCGTACCCCGACATGTCATCCA
ACTCCGCTGTCAACGGTCTTTGCTCGGGCGCACCAGGTAGCCTCTGCCCC
CTATCTCCCTGCTCTGACGTGCCATTGCCCGCCCCGGCCCCCGCAGGCGC
GTCTGATGTA
back to top

Coding sequence (CDS) from alignment at Scaffold_478:303574..306083-

>EsuBft1138_13a-0001 ID=EsuBft1138_13a-0001|Name=EsuBft1138_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=249bp|location=Sequence derived from alignment at Scaffold_478:303574..306083- (Ectocarpus subulatus male Bft15b)
ATGGTAGCTCAGCAGACACGGTACCCGGGAAGGGGCCAGCACAAAAAAAC
TCGCCGCGCCATGCGCGCATGCCACGAGAGCATTACCTTTGGGGCCAGAG
TTCTCAGCACACACAGCCCGGACCGCGACAAAGCCTACGGAGTACAGGAA
GGAGATCACGTTGAACCTCGGAATGTTCTCGCCGAGAGCGGCGGCGACCT
GCAGTGCCTGCCGTCGCCAAGACGATGGTGCAGGTCTCCGCCAGCCTAG
back to top