EsuBft1138_12a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1138_12a-0001
Unique Name	EsuBft1138_12a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_478	contig	Scaffold_478:285724..288038 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	6500.XP_005102894.1
ProteomeId	EsuBft1138_12
Protein domains	PTHR19446
Protein domains	SignalP-TM
Owner	apollo_admin@sb-roscoff.fr
Note	rna-directed dna polymerase from mobile element jockey os:drosophila melanogaster gn:pol pe:1 s [Automatic annotation]
Nb exon	2
Max annot lvl	33208\|Metazoa
Length	2136
Evalue	1.28e-18
EggNOG OGs	KOG1075@1\|root,KOG1075@2759\|Eukaryota,3A35Z@33154\|Opisthokonta,3BQYF@33208\|Metazoa,3D7GC@33213\|Bilateria
Date last modified	2016-06-14
Date creation	2016-06-14
Description	Ribonuclease H protein
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1138_12a	EsuBft1138_12a	Ectocarpus subulatus male Bft15b	gene	Scaffold_478 285724..288038 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1138_12a-0001-exon	agat-exon-89663	Ectocarpus subulatus male Bft15b	exon	Scaffold_478 285724..285771 +
EsuBft1138_12a-0001-exon	EsuBft1138_12a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_478 285951..288038 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1138_12a-0001-cds	EsuBft1138_12a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_478 285724..285771 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1138_12a-0001-exon	agat-three_prime_utr-1311	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_478 286308..288038 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1138_12a-0001	EsuBft1138_12	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_478 285724..286307 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_478:285724..288038+
coding sequence from alignment at Scaffold_478:285724..288038+

spliced messenger RNA

>EsuBft1138_12a-0001 ID=EsuBft1138_12a-0001|Name=EsuBft1138_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2136bp|location=Sequence derived from alignment at Scaffold_478:285724..288038+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGGCAATCCTTCAAACGACGAAAGACCTCCATCTCTTTGTGCACGGT
GACGCAGCGACCAGCGACGCGCGCCACCCGACGCCTGGCGGCGGTACCAG
ACCTCGAGGAGGTTGAGGTGGCAACGAAAGGTTTGGGGAACTGGAAGGCG
GTTGGCCCCGACCTCCTTGCCGCCGAACTGCTCAAGGTCGACGGCGACGA
CGAGCCCATTGTCCTGGAGCGCCTCCGTGCCATCTTCGTCGAAGTGTGGA
ATGGGGGAGAGATGCCGCAGGAGTGGAAGGATGCCATCATTAAGGTGTTG
TACAAGAAGGGTGACCGGACGAACTGCAACAACTTCAGGGGCATCTCGCT
GCTCTCGCATGTAGGCAAAATACTCGCCAAGACCATCACCAACCGCCTGA
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NNNNNNNNNNCTAGATACGGCACCAATCAACGGGGCGGGAGGGGGGCGGG
AGGAAACGGCGCGGGAAGAAAGCAAGCGAGAAGAGACCGACCGCGTGACG
TGACATGTTGCGGTTGAATTTCAGCGACTAGTTTTTCTGTTGCCCTCTCC
CCCGTTTGCTGTCGCGTTCAGACTGTCTCTACGGATATCCCTGTCTCTGT
GCGAGTTTGTTTATGTCCTCGTCTGTCTTTGGTTTATTTCGTTTTATGTT
GTTTTGTGTTTTTACTGGCACGTACTGCTGACCCTTGGGGTCCTTCCGGA
AGCCTACCCCCCAGGCTGGTGGTGCGCACGTTCCACTATTTATTTATTTG
TTTGTTTCTGATTCTTTTGTTTTCTTGTATTTTATC

protein sequence of EsuBft1138_12a-0001

>EsuBft1138_12 ID=EsuBft1138_12|Name=EsuBft1138_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=135bp
MRQSFKRRKTSISLCTVTQRPATRATRRLAAVPDLEEVEVATKGLGNWKA
VGPDLLAAELLKVDGDDEPIVLERLRAIFVEVWNGGEMPQEWKDAIIKVL
YKKGDRTNCNNFRGISLLSHVGKILAKTITNRLXX

mRNA from alignment at Scaffold_478:285724..288038+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1138_12a-0001 ID=EsuBft1138_12a-0001|Name=EsuBft1138_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2315bp|location=Sequence derived from alignment at Scaffold_478:285724..288038+ (Ectocarpus subulatus male Bft15b)
ATGCGGCAATCCTTCAAACGACGAAAGACCTCCATCTCTTTGTGCACGGT
ATCCACTCTGTCTGGAGTCGTCCCACTGTTTGTCGACTCTCCGTTAGCTT
TCAATGACGGCCTTTACTCGGCGTGCTGCTCCGGAACAAGAATGCCATCC
TCAAGCGGTGGCGGAGATTCCTCGATACCCTCCTGAACTCCAAGTCCCCT
ACCCTGAACCCAGACGTTGTCGAACAGGTGACGCAGCGACCAGCGACGCG
CGCCACCCGACGCCTGGCGGCGGTACCAGACCTCGAGGAGGTTGAGGTGG
CAACGAAAGGTTTGGGGAACTGGAAGGCGGTTGGCCCCGACCTCCTTGCC
GCCGAACTGCTCAAGGTCGACGGCGACGACGAGCCCATTGTCCTGGAGCG
CCTCCGTGCCATCTTCGTCGAAGTGTGGAATGGGGGAGAGATGCCGCAGG
AGTGGAAGGATGCCATCATTAAGGTGTTGTACAAGAAGGGTGACCGGACG
AACTGCAACAACTTCAGGGGCATCTCGCTGCTCTCGCATGTAGGCAAAAT
ACTCGCCAAGACCATCACCAACCGCCTGANNNNNNNNNNNNNNNNNNNNN
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ACCAATCAACGGGGCGGGAGGGGGGCGGGAGGAAACGGCGCGGGAAGAAA
GCAAGCGAGAAGAGACCGACCGCGTGACGTGACATGTTGCGGTTGAATTT
CAGCGACTAGTTTTTCTGTTGCCCTCTCCCCCGTTTGCTGTCGCGTTCAG
ACTGTCTCTACGGATATCCCTGTCTCTGTGCGAGTTTGTTTATGTCCTCG
TCTGTCTTTGGTTTATTTCGTTTTATGTTGTTTTGTGTTTTTACTGGCAC
GTACTGCTGACCCTTGGGGTCCTTCCGGAAGCCTACCCCCCAGGCTGGTG
GTGCGCACGTTCCACTATTTATTTATTTGTTTGTTTCTGATTCTTTTGTT
TTCTTGTATTTTATC

Coding sequence (CDS) from alignment at Scaffold_478:285724..288038+

>EsuBft1138_12a-0001 ID=EsuBft1138_12a-0001|Name=EsuBft1138_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=405bp|location=Sequence derived from alignment at Scaffold_478:285724..288038+ (Ectocarpus subulatus male Bft15b)
ATGCGGCAATCCTTCAAACGACGAAAGACCTCCATCTCTTTGTGCACGGT
GACGCAGCGACCAGCGACGCGCGCCACCCGACGCCTGGCGGCGGTACCAG
ACCTCGAGGAGGTTGAGGTGGCAACGAAAGGTTTGGGGAACTGGAAGGCG
GTTGGCCCCGACCTCCTTGCCGCCGAACTGCTCAAGGTCGACGGCGACGA
CGAGCCCATTGTCCTGGAGCGCCTCCGTGCCATCTTCGTCGAAGTGTGGA
ATGGGGGAGAGATGCCGCAGGAGTGGAAGGATGCCATCATTAAGGTGTTG
TACAAGAAGGGTGACCGGACGAACTGCAACAACTTCAGGGGCATCTCGCT
GCTCTCGCATGTAGGCAAAATACTCGCCAAGACCATCACCAACCGCCTGA
NNNNN