EsuBft1137_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1137_7a-0001
Unique NameEsuBft1137_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_633contigScaffold_633:399177..399629 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1137_7
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length45
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1137_7aEsuBft1137_7aEctocarpus subulatus male Bft15bgeneScaffold_633 399177..399629 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1137_7a-0001-exonEsuBft1137_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_633 399177..399629 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1137_7a-0001-cdsEsuBft1137_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_633 399177..399629 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1137_7a-0001EsuBft1137_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_633 399177..399629 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1137_7a-0001 ID=EsuBft1137_7a-0001|Name=EsuBft1137_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=453bp|location=Sequence derived from alignment at Scaffold_633:399177..399629- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGTCGAAGAGCTACAGTCCATTGGCTCGGGCGATGACAGATCCCG
CCAGTCGAGCTTGGCGAGTCTAGCGGATGACCTCACGAAGCGGAGCTCCG
TTGGGCATCGCCTAGGGTTCGGTCTGGACAGGGCGCTGGCTCACCTACAC
GGTAAACTCGACGGTGACGGTGTGCCGACCGCCGCCTCCCCGACGGCAGC
TGGGAACGAGAGCGGCGGCAGCCAGTTCCTCTCGACCGCGGCGGCGACGG
CATCGGGAGCCGCAAGCGGGTTCGGCTCGTTTCGGGTTCCCTTTCAGAAG
GAGAATGACAGCGCCGATCGAAAGCTGTCTTCCTTGGCGGAAGGCGCCGG
AGATGCTGAAGACGACCATAGACAACAGGGACAACCGCTTGCTGCTGCTG
CCGTTTCCGATGCCCCGATCTTGCAGGTGGGTGTGATGATTGCGTTGACT
TAA
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protein sequence of EsuBft1137_7a-0001

>EsuBft1137_7 ID=EsuBft1137_7|Name=EsuBft1137_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=150bp
MSVEELQSIGSGDDRSRQSSLASLADDLTKRSSVGHRLGFGLDRALAHLH
GKLDGDGVPTAASPTAAGNESGGSQFLSTAAATASGAASGFGSFRVPFQK
ENDSADRKLSSLAEGAGDAEDDHRQQGQPLAAAAVSDAPILQVGVMIALT
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mRNA from alignment at Scaffold_633:399177..399629-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1137_7a-0001 ID=EsuBft1137_7a-0001|Name=EsuBft1137_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=453bp|location=Sequence derived from alignment at Scaffold_633:399177..399629- (Ectocarpus subulatus male Bft15b)
ATGAGCGTCGAAGAGCTACAGTCCATTGGCTCGGGCGATGACAGATCCCG
CCAGTCGAGCTTGGCGAGTCTAGCGGATGACCTCACGAAGCGGAGCTCCG
TTGGGCATCGCCTAGGGTTCGGTCTGGACAGGGCGCTGGCTCACCTACAC
GGTAAACTCGACGGTGACGGTGTGCCGACCGCCGCCTCCCCGACGGCAGC
TGGGAACGAGAGCGGCGGCAGCCAGTTCCTCTCGACCGCGGCGGCGACGG
CATCGGGAGCCGCAAGCGGGTTCGGCTCGTTTCGGGTTCCCTTTCAGAAG
GAGAATGACAGCGCCGATCGAAAGCTGTCTTCCTTGGCGGAAGGCGCCGG
AGATGCTGAAGACGACCATAGACAACAGGGACAACCGCTTGCTGCTGCTG
CCGTTTCCGATGCCCCGATCTTGCAGGTGGGTGTGATGATTGCGTTGACT
TAA
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Coding sequence (CDS) from alignment at Scaffold_633:399177..399629-

>EsuBft1137_7a-0001 ID=EsuBft1137_7a-0001|Name=EsuBft1137_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=453bp|location=Sequence derived from alignment at Scaffold_633:399177..399629- (Ectocarpus subulatus male Bft15b)
ATGAGCGTCGAAGAGCTACAGTCCATTGGCTCGGGCGATGACAGATCCCG
CCAGTCGAGCTTGGCGAGTCTAGCGGATGACCTCACGAAGCGGAGCTCCG
TTGGGCATCGCCTAGGGTTCGGTCTGGACAGGGCGCTGGCTCACCTACAC
GGTAAACTCGACGGTGACGGTGTGCCGACCGCCGCCTCCCCGACGGCAGC
TGGGAACGAGAGCGGCGGCAGCCAGTTCCTCTCGACCGCGGCGGCGACGG
CATCGGGAGCCGCAAGCGGGTTCGGCTCGTTTCGGGTTCCCTTTCAGAAG
GAGAATGACAGCGCCGATCGAAAGCTGTCTTCCTTGGCGGAAGGCGCCGG
AGATGCTGAAGACGACCATAGACAACAGGGACAACCGCTTGCTGCTGCTG
CCGTTTCCGATGCCCCGATCTTGCAGGTGGGTGTGATGATTGCGTTGACT
TAA
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