EsuBft1137_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1137_5a-0001
Unique Name	EsuBft1137_5a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_633	contig	Scaffold_633:403481..408478 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1137_5
Owner	apollo_admin@sb-roscoff.fr
Nb exon	3
Length	219
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1137_5a	EsuBft1137_5a	Ectocarpus subulatus male Bft15b	gene	Scaffold_633 403481..408478 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1137_5a-0001	EsuBft1137_5	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_633 403820..406937 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1137_5a-0001-exon	agat-exon-78921	Ectocarpus subulatus male Bft15b	exon	Scaffold_633 403481..403879 +
EsuBft1137_5a-0001-exon	agat-exon-78920	Ectocarpus subulatus male Bft15b	exon	Scaffold_633 403969..404156 +
EsuBft1137_5a-0001-exon	EsuBft1137_5a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_633 406874..408478 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1137_5a-0001-exon	agat-five_prime_utr-831	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_633 403481..403819 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1137_5a-0001-cds	EsuBft1137_5a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_633 403820..403879 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1137_5a-0001-exon	agat-three_prime_utr-1306	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_633 406938..408478 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_633:403481..408478+
coding sequence from alignment at Scaffold_633:403481..408478+

spliced messenger RNA

>EsuBft1137_5a-0001 ID=EsuBft1137_5a-0001|Name=EsuBft1137_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2192bp|location=Sequence derived from alignment at Scaffold_633:403481..408478+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTATGGTCACCAAATCTTTGAAAAAATGTCTAAATTTTCAAACATT
TGCGGATAAAGATTTTGTTTCATTTTTTATGGGAGAAAATCTTCGGCAAA
ATATTCTCAAAGATTTTGGAATGGGGCAAAAGTCGCTCGTTTGACAAAAC
GTTTGACAAACATTTTGAAATGGGGCAGGTCGCGAAAATGTTTGGGCGGC
GGAAAAGGCAAGTAGCGCCGCATTTTCGGCACATACGCCGCCAACACACA
CGAACACACCCCAACAACACAAGAACACACGAACATATCTACACACACAC
TCACGAGAAGGCCGCGCCGACGAGAAGGCCACGCCCAACATGAATGAGGA
GTCCATAATCGCCGGGGCTGCTGCCGCAGCATCGAGTTTGCAGAACATTA
ACATTATGCACACGTTCGACTCCGATGGTGAGCATGATGACCAAGAACCG
GGTGGTTTGTTCGGCGATCTGCTGGTGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGCGCGCGAAGATTTTTTTCAAAGATTTGGTGACCATAAACA
TGGGCCTGAGCGCGCAATTCTTTTCGGTAGAGATTTTGACCGAAGAGAAA
GAGAGCCGGGGAAGCGGCGGTGGGGGGGAAGAAACGGCGACCGGGCACTG
ATGTAGAAGCGAGTAGGGCGGCCGAGGCAGCGCTTCTGGCGAACTATGTA
CCCGGCTGATGTTGTTGCGCCTTGTTTCCCTCCCTGCCGTATGCTATACT
CCTTTATGTATGTCCTTTTTATTGCCTTCGGCCTCTGTGCTGTTTCTTTT
TTTTCATGACCTCCCTACCTACTCTGCTGTGTTGGGAACCTTGATCTCGC
TTTGCTGTTGCCTTTGTTTTTGTACGTCTGGCTGTCTGCCCATCTGCCGC
CTCTTTGTCCTGTTTGCTCCGTTACTCCCATGCCCTGGTGCGCAGTGCCT
GGTGTTGGTACGTTACCCTTTGATTTTTTCTTTGGGCGGGTGTGGGAAGC
GTCCTCCATTATTTTTCTGTTATTTTTGTTTTGTTTTATTTTGATCGGTG
TCCGAGGGCTCTTTTCTCGAACGGTCGGTGCGATACCTGTTCTTTTCTTT
CTATCATTTTGTTTTCTTTTTCCGAGTGGTTTGTACCCTATTTATGTTTT
TTTTTTGTTTTCTCGCGGCGTCGTATGTGCCGGGTTTTGAGACCACGGGC
TTCCCATTTTTTGTGGACTATAGCGCTAATGCGAGAAACAACAACAACAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACGTGC
GTACGTACGTGTTGTCGTACAGTATTGACGTTTACAGAGAGAGGCAGCGT
ATAGTATGTATATAGTGTATCATCGCCTACTCTCTCTCTCTCTCTTTCTC
AGTCTTTGCTTTGCCCCCCGATCGTTGCCGTGCGTGTTTCTACGCAACGA
TATATGTATATCAAATAGGGTAGGCCCATGTCTATGTTGCTTCCGGCACA
TCATGATCAGAAGATAAAGATGGCGCTCGCACTTAAGAAGTAGTTAAGAA
ATGAGGCCTCGAAAATAATCTAAATCAAAGAAATTGACCACGTAATAATA
ACAACACGTGCATGCTCAGGGCCGACGTGGTATTAGGAACAAAAACGAAC
CCAATTGTCTTTGTGTTGTAAGGTCAGAGGCCCCAAAACGCGACAGCTGC
AATATAATAAGCGCTCACGAAGGAGTGAGGGGCTACTCGCGGGGCGCCCG
GTGGGCAGTTAGTTGCAGATCAGCGGCGAGGAGGAGGTTCCTTTGAAAAC
AGTACTGGTGCGGAGATGGGGGAGGTGTACTGTTTTTATTTTTGCGCGTC
TAACGGTAGTCAACTATAAAATCGGGCTTACAAATGCCGGCACTCTTGAA
GCTTTGTTTTTGTTGTTGCCGTGAATGTCCAATAAATCGGTGTGTCGTGT
ACTCTGTGGGAACCGGCTGGTACATAGTTTTCGCGGCACGGCATGGACAT
TCTCGGGCTTGAACAACCTCGCCGGCAACCAAGCACAGATACAAATGTCC
CTTAACTGGGTTTGGGCTGGCGTTTCCGCACCCTGTCTGACCTTGGAAGT
TGGCAACGGTGCGCCCGACCGGGATACGCAGGTTGTACAACGCCTCGGGG
TTACAGGTCACGTTAACCCCCCCGTAACCGTGCCCACTGGCC

protein sequence of EsuBft1137_5a-0001

>EsuBft1137_5 ID=EsuBft1137_5|Name=EsuBft1137_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=103bp
MNEESIIAGAAAAASSLQNINIMHTFDSDGEHDDQEPGGLFGDLLVEEEE
EEEEEEERAKIFFKDLVTINMGLSAQFFSVEILTEEKESRGSGGGGEETA
TGH

mRNA from alignment at Scaffold_633:403481..408478+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1137_5a-0001 ID=EsuBft1137_5a-0001|Name=EsuBft1137_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4998bp|location=Sequence derived from alignment at Scaffold_633:403481..408478+ (Ectocarpus subulatus male Bft15b)
ATGTTTATGGTCACCAAATCTTTGAAAAAATGTCTAAATTTTCAAACATT
TGCGGATAAAGATTTTGTTTCATTTTTTATGGGAGAAAATCTTCGGCAAA
ATATTCTCAAAGATTTTGGAATGGGGCAAAAGTCGCTCGTTTGACAAAAC
GTTTGACAAACATTTTGAAATGGGGCAGGTCGCGAAAATGTTTGGGCGGC
GGAAAAGGCAAGTAGCGCCGCATTTTCGGCACATACGCCGCCAACACACA
CGAACACACCCCAACAACACAAGAACACACGAACATATCTACACACACAC
TCACGAGAAGGCCGCGCCGACGAGAAGGCCACGCCCAACATGAATGAGGA
GTCCATAATCGCCGGGGCTGCTGCCGCAGCATCGAGTTTGCAGAACATTG
TGCACACGTTCGACTCCGATGGTGAGCATGATGACCAAGAACCGGGTGGT
TTGTTCGGCGATCTGCTGGTGGNGCATCGAGTTTGCAGAACATTATGCAC
ACGTTCGACTCCGATGGTGAGCATGATGACCAAGAACCGGGTGGTTTGTT
CGGCGATCTGCTGGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGC
GCGCGAAGATTTTTTTCAAAGATTTGGTGACCATAAACATGGGCCTGAGC
GCGCAATTCTTTTCGGTAGAGATTTTGTATGCAATACTTCTAATACTCAT
ATATTCGACCACTATTATGACATATTATTTTTAGGAGACAGACACGTGAC
GGTCATGCAGATTTGTTCCGCGACCGGCTGTGATGTGANNNNNNNNNNNN
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NNNNNNNNNNNNNNNNAAGCAGAAGCAGAGAGTACGGCCTCAGGACCGAA
GAGAAAGAGAGCCGGGGAAGCGGCGGTGGGGGGGAAGAAACGGCGACCGG
GCACTGATGTAGAAGCGAGTAGGGCGGCCGAGGCAGCGCTTCTGGCGAAC
TATGTACCCGGCTGATGTTGTTGCGCCTTGTTTCCCTCCCTGCCGTATGC
TATACTCCTTTATGTATGTCCTTTTTATTGCCTTCGGCCTCTGTGCTGTT
TCTTTTTTTTCATGACCTCCCTACCTACTCTGCTGTGTTGGGAACCTTGA
TCTCGCTTTGCTGTTGCCTTTGTTTTTGTACGTCTGGCTGTCTGCCCATC
TGCCGCCTCTTTGTCCTGTTTGCTCCGTTACTCCCATGCCCTGGTGCGCA
GTGCCTGGTGTTGGTACGTTACCCTTTGATTTTTTCTTTGGGCGGGTGTG
GGAAGCGTCCTCCATTATTTTTCTGTTATTTTTGTTTTGTTTTATTTTGA
TCGGTGTCCGAGGGCTCTTTTCTCGAACGGTCGGTGCGATACCTGTTCTT
TTCTTTCTATCATTTTGTTTTCTTTTTCCGAGTGGTTTGTACCCTATTTA
TGTTTTTTTTTTGTTTTCTCGCGGCGTCGTATGTGCCGGGTTTTGAGACC
ACGGGCTTCCCATTTTTTGTGGACTATAGCGCTAATGCGAGAAACAACAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA
ACGTGCGTACGTACGTGTTGTCGTACAGTATTGACGTTTACAGAGAGAGG
CAGCGTATAGTATGTATATAGTGTATCATCGCCTACTCTCTCTCTCTCTC
TTTCTCAGTCTTTGCTTTGCCCCCCGATCGTTGCCGTGCGTGTTTCTACG
CAACGATATATGTATATCAAATAGGGTAGGCCCATGTCTATGTTGCTTCC
GGCACATCATGATCAGAAGATAAAGATGGCGCTCGCACTTAAGAAGTAGT
TAAGAAATGAGGCCTCGAAAATAATCTAAATCAAAGAAATTGACCACGTA
ATAATAACAACACGTGCATGCTCAGGGCCGACGTGGTATTAGGAACAAAA
ACGAACCCAATTGTCTTTGTGTTGTAAGGTCAGAGGCCCCAAAACGCGAC
AGCTGCAATATAATAAGCGCTCACGAAGGAGTGAGGGGCTACTCGCGGGG
CGCCCGGTGGGCAGTTAGTTGCAGATCAGCGGCGAGGAGGAGGTTCCTTT
GAAAACAGTACTGGTGCGGAGATGGGGGAGGTGTACTGTTTTTATTTTTG
CGCGTCTAACGGTAGTCAACTATAAAATCGGGCTTACAAATGCCGGCACT
CTTGAAGCTTTGTTTTTGTTGTTGCCGTGAATGTCCAATAAATCGGTGTG
TCGTGTACTCTGTGGGAACCGGCTGGTACATAGTTTTCGCGGCACGGCAT
GGACATTCTCGGGCTTGAACAACCTCGCCGGCAACCAAGCACAGATACAA
ATGTCCCTTAACTGGGTTTGGGCTGGCGTTTCCGCACCCTGTCTGACCTT
GGAAGTTGGCAACGGTGCGCCCGACCGGGATACGCAGGTTGTACAACGCC
TCGGGGTTACAGGTCACGTTAACCCCCCCGTAACCGTGCCCACTGGCC

Coding sequence (CDS) from alignment at Scaffold_633:403481..408478+

>EsuBft1137_5a-0001 ID=EsuBft1137_5a-0001|Name=EsuBft1137_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=312bp|location=Sequence derived from alignment at Scaffold_633:403481..408478+ (Ectocarpus subulatus male Bft15b)
ATGAATGAGGAGTCCATAATCGCCGGGGCTGCTGCCGCAGCATCGAGTTT
GCAGAACATTAACATTATGCACACGTTCGACTCCGATGGTGAGCATGATG
ACCAAGAACCGGGTGGTTTGTTCGGCGATCTGCTGGTGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGCGCGCGAAGATTTTTTTCAAAGATTTGGT
GACCATAAACATGGGCCTGAGCGCGCAATTCTTTTCGGTAGAGATTTTGA
CCGAAGAGAAAGAGAGCCGGGGAAGCGGCGGTGGGGGGGAAGAAACGGCG
ACCGGGCACTGA