EsuBft1137_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1137_2a-0001
Unique Name	EsuBft1137_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_633	contig	Scaffold_633:425010..427479 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D8LN28
ProteomeId	EsuBft1137_2
Protein domains	Coil
Protein domains	PTHR19303
Protein domains	IPR004875
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Max annot lvl	2759\|Eukaryota
Length	205
Hectar predicted targeting category	other localisation
Evalue	2.81e-56
EggNOG OGs	2CZS4@1\|root,2SBGG@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14
Description	DDE superfamily endonuclease
COG category	S

Cross References

External references for this mRNA


Database	Accession
GO	0003676

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1137_2a	EsuBft1137_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_633 425010..427479 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1137_2a-0001-exon	EsuBft1137_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_633 425010..426862 +
EsuBft1137_2a-0001-exon	agat-exon-78907	Ectocarpus subulatus male Bft15b	exon	Scaffold_633 427275..427479 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1137_2a-0001-cds	EsuBft1137_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_633 425010..426068 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1137_2a-0001-exon	agat-three_prime_utr-1299	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_633 426069..426862 +
EsuBft1137_2a-0001-exon	agat-three_prime_utr-1300	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_633 427275..427479 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1137_2a-0001	EsuBft1137_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_633 425010..426068 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_633:425010..427479+
coding sequence from alignment at Scaffold_633:425010..427479+

spliced messenger RNA

>EsuBft1137_2a-0001 ID=EsuBft1137_2a-0001|Name=EsuBft1137_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2058bp|location=Sequence derived from alignment at Scaffold_633:425010..427479+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTTCCACTTCGCGGGAGAACTGCACGATCGTCACCACCATCAACGC
CGCCGGCGCCGTGTTGGCCCCTACCATCATCTTCAAAGGGCAGCGTTTCA
ACGGAGATTGGATCGTGGATCAGGACGGCCCGCCGGGTGCGACTTACACC
TGCACGGAGTCGTCCTTCATGTGTGGTGACGTGTTCATCAAGTACATCAT
GGACTTCCACGAGCAGCTGCGCAAGCGCAACTTGCTCGATGGAAAACCCC
ATGTGCTCGTGCTGGATGGGCACGCGTCGCACGTGAGCTTGGAAGTCGTG
GAGTTGGCCAGGTCCCTCAACATCCACCTCGTCCAGCTGCCCTCCCACAT
GTCCCACATCACCCAGCCCCTGGACGTCGCTGGCTTCGGGTGCTTCAAGA
AGGAGCTGACCAAGGCGATCCAGGCCTTCCCGGCGACACACGGAGGGGCG
TTGCCGCGGAAGCGGGACATGGCCTCCGTGATCGGGCAAGCGTGGAGCAC
GAGCTTTACGCCGGACATCAACAAAGCTTCCTTCGCCGGGGCGGGCCTTT
GGCCGGTGGACAAGGAACGGGCACTCAGTCGGCTGCTGAAACCCAAGAGG
AAGGAGAGGGAAACCGACCGCCCTCCCCTGCAAGACGTCCCCATCGCCGT
GAGCAACGATCGGCTGGAGGAATTGCTGGGCGAACGCGCCGTCCGCAAGC
TCCTGGGGGAAGGCCACACCCTCACGGGACTCCGCGTGAGCACGGTGTTT
CTCGGCGACTACCTGCCCAGCAAGCGATCCAAGAAGCCGCCAACGCGGGC
GAACTTGGGCATTCCAGAGGGAGGACTTCCCATTTGTGACGGGTGGTTGG
CGGAGATGAAGAAGAAACAAAACGAAGCCGAGGCTGCCGAGGCCGCCAAG
GCGGCAAAGGCCGCGGCGAGGCAAACGGCACGGGACGCGAAGGCGGCGGC
GGCGGCGGCGGCGGCGGCGAGGAACGGCGGGCGGGGACGGGGGCAAGGGC
AGGGCAGAGGGCGGGGCCAGGGAAGGGGGCGGGGGGGGCGGGCGAGAAGA
GGAGAGTAGGAGGGACGAGCGAACCGAGACAGGGAGGGAGGAAGGGGGGG
GGCGAGGTGTTGGTGTTGTTCAAGGGGGGCGAGGGGGGCGTGGGCTGGGC
GCGCGGGTGGGCGGGCGCACTGTTGGTGGCCGCGGCGAGGGCACGGGGGG
GCATGGGCGGGGAGGTGGTCCTAGCCGCGGTGGAACAGGGGCGGAAGGAG
CGGGAGGGGCGGGAGGGGCGGGAGGGTCAGGAATCACCGGGGGTCAGCCG
CCGGCGGCGTCCGTATCGCGACCGGGACGAACCCGCACGCCGATACCTGT
AGTGGATGTCTAGGTTTCTTCGGGGAGGTGGGGGTTGTATTGTTGTGCAG
AGAACCACATGGTATCGGGCTAAAGTTAGCTCTGAATGGCTTGAAATTTG
TGTGTGGAACTGATTTCGAACTGTTGAGTGTTCAGTACGGGTCACGAGGG
TGCTTCAGGTAACGTGGTTGTCAAACAGCACGTCGAGGGGGAGGCGGGAA
TGGCTGGCGGACAACTTGTGGACAAACCCGGGGATGCTGTACTTTTGTCC
CCTGGGCTATGTGTTTTTTTTTTTTGTTATCCAACGTGTTTTCTGCAACC
TTCAATACGTTTCTCTGAAACGGCGTCACCCGGGGGGTTAATATGGGTGA
AAAATAGTTGCTTCAACATGTGGCACGGTTTTGACGGAAGTTGCTGCCGT
ACAAGCCAAAAAGGGGGCAAAAGTGCCCATGTTTGGACAGGCATATTACC
ATCCATAGGCATCCGTTTAACGTTATTTTTTTTTGTGACTCAGAACAGGA
TGCGTCTGCAGCGTAGCTTGTGCACACACCCCCACAAGCGCCGCGTTGGG
GTATGCATGGCGAGTTATACAAGGCACGTTAGGGCCGCAGCCTGGCTGGG
AGCAACTCTCTTCACCCTCGCTGCTCTCGCAAGCGCGATTCCTGGGCGCT
CTGCACGCAAATTACACGACCTCGCGCTTCATCACCACCGCCAGCTTCTT
CCGACCCA

protein sequence of EsuBft1137_2a-0001

>EsuBft1137_2 ID=EsuBft1137_2|Name=EsuBft1137_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=352bp
MRSTSRENCTIVTTINAAGAVLAPTIIFKGQRFNGDWIVDQDGPPGATYT
CTESSFMCGDVFIKYIMDFHEQLRKRNLLDGKPHVLVLDGHASHVSLEVV
ELARSLNIHLVQLPSHMSHITQPLDVAGFGCFKKELTKAIQAFPATHGGA
LPRKRDMASVIGQAWSTSFTPDINKASFAGAGLWPVDKERALSRLLKPKR
KERETDRPPLQDVPIAVSNDRLEELLGERAVRKLLGEGHTLTGLRVSTVF
LGDYLPSKRSKKPPTRANLGIPEGGLPICDGWLAEMKKKQNEAEAAEAAK
AAKAAARQTARDAKAAAAAAAAARNGGRGRGQGQGRGRGQGRGRGGRARR
GE

mRNA from alignment at Scaffold_633:425010..427479+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1137_2a-0001 ID=EsuBft1137_2a-0001|Name=EsuBft1137_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2470bp|location=Sequence derived from alignment at Scaffold_633:425010..427479+ (Ectocarpus subulatus male Bft15b)
ATGCGTTCCACTTCGCGGGAGAACTGCACGATCGTCACCACCATCAACGC
CGCCGGCGCCGTGTTGGCCCCTACCATCATCTTCAAAGGGCAGCGTTTCA
ACGGAGATTGGATCGTGGATCAGGACGGCCCGCCGGGTGCGACTTACACC
TGCACGGAGTCGTCCTTCATGTGTGGTGACGTGTTCATCAAGTACATCAT
GGACTTCCACGAGCAGCTGCGCAAGCGCAACTTGCTCGATGGAAAACCCC
ATGTGCTCGTGCTGGATGGGCACGCGTCGCACGTGAGCTTGGAAGTCGTG
GAGTTGGCCAGGTCCCTCAACATCCACCTCGTCCAGCTGCCCTCCCACAT
GTCCCACATCACCCAGCCCCTGGACGTCGCTGGCTTCGGGTGCTTCAAGA
AGGAGCTGACCAAGGCGATCCAGGCCTTCCCGGCGACACACGGAGGGGCG
TTGCCGCGGAAGCGGGACATGGCCTCCGTGATCGGGCAAGCGTGGAGCAC
GAGCTTTACGCCGGACATCAACAAAGCTTCCTTCGCCGGGGCGGGCCTTT
GGCCGGTGGACAAGGAACGGGCACTCAGTCGGCTGCTGAAACCCAAGAGG
AAGGAGAGGGAAACCGACCGCCCTCCCCTGCAAGACGTCCCCATCGCCGT
GAGCAACGATCGGCTGGAGGAATTGCTGGGCGAACGCGCCGTCCGCAAGC
TCCTGGGGGAAGGCCACACCCTCACGGGACTCCGCGTGAGCACGGTGTTT
CTCGGCGACTACCTGCCCAGCAAGCGATCCAAGAAGCCGCCAACGCGGGC
GAACTTGGGCATTCCAGAGGGAGGACTTCCCATTTGTGACGGGTGGTTGG
CGGAGATGAAGAAGAAACAAAACGAAGCCGAGGCTGCCGAGGCCGCCAAG
GCGGCAAAGGCCGCGGCGAGGCAAACGGCACGGGACGCGAAGGCGGCGGC
GGCGGCGGCGGCGGCGGCGAGGAACGGCGGGCGGGGACGGGGGCAAGGGC
AGGGCAGAGGGCGGGGCCAGGGAAGGGGGCGGGGGGGGCGGGCGAGAAGA
GGAGAGTAGGAGGGACGAGCGAACCGAGACAGGGAGGGAGGAAGGGGGGG
GGCGAGGTGTTGGTGTTGTTCAAGGGGGGCGAGGGGGGCGTGGGCTGGGC
GCGCGGGTGGGCGGGCGCACTGTTGGTGGCCGCGGCGAGGGCACGGGGGG
GCATGGGCGGGGAGGTGGTCCTAGCCGCGGTGGAACAGGGGCGGAAGGAG
CGGGAGGGGCGGGAGGGGCGGGAGGGTCAGGAATCACCGGGGGTCAGCCG
CCGGCGGCGTCCGTATCGCGACCGGGACGAACCCGCACGCCGATACCTGT
AGTGGATGTCTAGGTTTCTTCGGGGAGGTGGGGGTTGTATTGTTGTGCAG
AGAACCACATGGTATCGGGCTAAAGTTAGCTCTGAATGGCTTGAAATTTG
TGTGTGGAACTGATTTCGAACTGTTGAGTGTTCAGTACGGGTCACGAGGG
TGCTTCAGGTAACGTGGTTGTCAAACAGCACGTCGAGGGGGAGGCGGGAA
TGGCTGGCGGACAACTTGTGGACAAACCCGGGGATGCTGTACTTTTGTCC
CCTGGGCTATGTGTTTTTTTTTTTTGTTATCCAACGTGTTTTCTGCAACC
TTCAATACGTTTCTCTGAAACGGCGTCACCCGGGGGGTTAATATGGGTGA
AAAATAGTTGCTTCAACATGTGGCACGGTTTTGACGGAAGTTGCTGCCGT
ACAAGCCAAAAAGGGGGCAAAAGTGCCCATGTTTGGACAGGCATATTACC
ATCCATAGGCATCCGTTTAACGTTATTTTTTTTTGTGACTCAGAACAGGA
TGCGTACTAGTCGTTGGTTCATCAAATTCAACGGTTGAGCTGGTTCAAGG
CAACACAACCCGCACTACCCCCCCAAATGGGTATTTTTCGCCCCGCAGAA
TTGAGCCGAAAAACCGGGGATATGGGCATTGTGTCCCCGGTTGTGGGCCG
ATTTTTTTTTTTTAATCGAGCGCTCATGATACTAAGACTATGTGTGCCAA
ATTTGACGTCTTAGTACTTCAGAACCTTTGCAAATCGACCATCACCGGAA
CCTGCCCTTAACCCTTCTGTGGCTACCGTCACTTTTTTTTTATCATTTTT
TTTATCACTCTGGCTCAATAGCCCGGTCTTCTCAAGGAGGGGATGATAAG
GAAAATATCCCGAACCAAATGCAAGGGAGTTGTATAGCAGGCAGGACGCC
TACAAAGACCTGCAGGTCTGCAGCGTAGCTTGTGCACACACCCCCACAAG
CGCCGCGTTGGGGTATGCATGGCGAGTTATACAAGGCACGTTAGGGCCGC
AGCCTGGCTGGGAGCAACTCTCTTCACCCTCGCTGCTCTCGCAAGCGCGA
TTCCTGGGCGCTCTGCACGCAAATTACACGACCTCGCGCTTCATCACCAC
CGCCAGCTTCTTCCGACCCA

Coding sequence (CDS) from alignment at Scaffold_633:425010..427479+

>EsuBft1137_2a-0001 ID=EsuBft1137_2a-0001|Name=EsuBft1137_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1059bp|location=Sequence derived from alignment at Scaffold_633:425010..427479+ (Ectocarpus subulatus male Bft15b)
ATGCGTTCCACTTCGCGGGAGAACTGCACGATCGTCACCACCATCAACGC
CGCCGGCGCCGTGTTGGCCCCTACCATCATCTTCAAAGGGCAGCGTTTCA
ACGGAGATTGGATCGTGGATCAGGACGGCCCGCCGGGTGCGACTTACACC
TGCACGGAGTCGTCCTTCATGTGTGGTGACGTGTTCATCAAGTACATCAT
GGACTTCCACGAGCAGCTGCGCAAGCGCAACTTGCTCGATGGAAAACCCC
ATGTGCTCGTGCTGGATGGGCACGCGTCGCACGTGAGCTTGGAAGTCGTG
GAGTTGGCCAGGTCCCTCAACATCCACCTCGTCCAGCTGCCCTCCCACAT
GTCCCACATCACCCAGCCCCTGGACGTCGCTGGCTTCGGGTGCTTCAAGA
AGGAGCTGACCAAGGCGATCCAGGCCTTCCCGGCGACACACGGAGGGGCG
TTGCCGCGGAAGCGGGACATGGCCTCCGTGATCGGGCAAGCGTGGAGCAC
GAGCTTTACGCCGGACATCAACAAAGCTTCCTTCGCCGGGGCGGGCCTTT
GGCCGGTGGACAAGGAACGGGCACTCAGTCGGCTGCTGAAACCCAAGAGG
AAGGAGAGGGAAACCGACCGCCCTCCCCTGCAAGACGTCCCCATCGCCGT
GAGCAACGATCGGCTGGAGGAATTGCTGGGCGAACGCGCCGTCCGCAAGC
TCCTGGGGGAAGGCCACACCCTCACGGGACTCCGCGTGAGCACGGTGTTT
CTCGGCGACTACCTGCCCAGCAAGCGATCCAAGAAGCCGCCAACGCGGGC
GAACTTGGGCATTCCAGAGGGAGGACTTCCCATTTGTGACGGGTGGTTGG
CGGAGATGAAGAAGAAACAAAACGAAGCCGAGGCTGCCGAGGCCGCCAAG
GCGGCAAAGGCCGCGGCGAGGCAAACGGCACGGGACGCGAAGGCGGCGGC
GGCGGCGGCGGCGGCGGCGAGGAACGGCGGGCGGGGACGGGGGCAAGGGC
AGGGCAGAGGGCGGGGCCAGGGAAGGGGGCGGGGGGGGCGGGCGAGAAGA
GGAGAGTAG