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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 2880.D8LGV5 |
| ProteomeId | EsuBft1137_13 |
| Protein domains | PTHR11061 |
| Protein domains | IPR019614 |
| Protein domains | IPR029063 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | ribosomal rna large subunit methyltransferase k l os:alteromonas macleodii (strain dsm 17117 de [Automatic annotation] |
| Nb exon | 8 |
| Max annot lvl | 2759|Eukaryota |
| Length | 2170 |
| Hectar predicted targeting category | other localisation |
| Evalue | 1.09e-151 |
| EggNOG OGs | COG1092@1|root,2SNJA@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | S-adenosylmethionine-dependent methyltransferase |
| COG category | J |
Cross References
External references for this mRNA
| Database | Accession |
| GO | 0008168 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1137_13a-0001 ID=EsuBft1137_13a-0001|Name=EsuBft1137_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2170bp|location=Sequence derived from alignment at Scaffold_633:343169..349505- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGAACGCAGGCCTGGAGAACGGGGTGCGGTACCCTCTTGCCGCGAGGCA CCGCGGGATAGACCCCTGGCTCTTCCTCGACCTCAGGGCGGCCAGGAAGT GGGTGCTGAACAACAGCGATGGCATGGAGGTGCTCAATCTGTTCAGCTAC ACTGGAGGGATTGCTGCCGCGGCGGCGTGCGGGGGAGCCGCGAGCGTGTG GAACGTCGACTTCTCCGCTAGCGCCCACGAGGTTGGGAGGGCGAGCTTGA AGCTCAACGCGGGCTCGGCCGGAGAGTGCAAGTGCGAGTGGATGAAGCGG GACGTCTTGCCGACTATCAGACAGCTGGCCGGTACTCCGACCAAGGACTA CCGAGCGGACAGGCGTGGCCGAAACGCGAAAGTGTCGGGGGGGAGACACA GCTGGGACGCCGGAGGGCGGTACAACCAGGGGGGGTACGCAAACCGCAAC TCTCGAGGAGGCGGCGGCGGCGGCGGCGGCGGCAGCGGCGGTGGCCAGCG AGGGGGGCGGGGCAGCGGCGAGCGATCCAACGGCTACGGGGACGTGAGGG GGGGTCGGTCTGGGGGCGAGCAGGGGAGGGGGGGCGGAGAAGAGAAGGAC TTGAAAGCCAAGCAGTTCGACTTGGTCTTCTTGGACCCCCCGACGTGGTC CAAGTCCAAGCACGGGGCAGTAGACCTTGTCAGGGACTACCAGACGCTGT TCAAGCCGTCGCTGCTAGCCACCAAGGAAGGGGGAGTCGTCGTTGCCACC AACCACGTGTCTACGGTGGACTGCGCGGAGTGGGTGGAGAATCTTTCGAA GTGCGCCGCGAAAGCGGGTCGAACGGTGGATTCCGTCCAAGTCCTGCTCC CCGAGGATGACTTCCCCAGCCCGGATGGCAGACATCCGCTCAAGGTGGCC ATCGTTCACGTTTGACGTGAGTGAGAGGTGGGGGGGGCATCATAGCGACG TAGAACATCCACTCAAGGTTACCATCGCTCACGTTTGACGTGAAGGAGAG GTGGTGGTGGTTAGGAGGGAGGATCGCGATGTAGAACATCCGCTCAAGGT GGCCGTCGTTCACGTTTGACGTGAAGGAGAGGTGGGGGGGCAGCATTAGG GGTGTAGAGCATCCGCTCAAGGTTGCCATCGTTGACGCGGATGACAGGTA AGGAGGTGGCCCGTCGATGACAAACGTAGAGAAGGCGAGCACACGCGGTT GGCGCTTGTGCAACAACGAAACGAACGCGTTACAACAGTGTCGGATATTT GTGTCTCCGCTGGTTCATCCGTCGCTACAAGTAAATGTCGATGATCTTCT CTTCTTGCCCAGCACGCCAGGAGGAGCGTCGTTCGACGTTTTCCTCGGTG GGAGCGGTGGGGGAGGAAAATCTTCCAACCAAAGTGGTCGTCGTTGTTGT TGTGCACCGTGTCCCACGGCAATCTGTTTAACATAGTGCGGCTCGGGGAG CGGTGGGGGAGGGGCGTTAGTTACCAATCTTCACCCCTACAGCCAGGAGG TGTAGTGTTTGTGGTGCATCCAAGTCAAAGACCTTCTTTTTGGGGCGCTA GACCAATTAGAACAACGGGGGTGGACCAGCGACCAATAGTGTCCACCAGG GCACTCGTTTGGTGGCACCACCGCAACGTCCGTGCGCGTACGCAAAAAAG GCACCTTTCCTGCCTTTGATAGACTTTGGTATACAAGCAACGTTGGCGAG GGGGAGGGGGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNGGGGGGGGGGGGGGGGGGTACCTGACGCATTGAGACCACGAGGGA CCACTACTTTCACAGTATGAGCTTTCGAAACCAAACAAAACATGATTTTA TCATATGCATATATAGTCGATGCATGATGTAGAAGGTTTCTTGACCACTC ACTCACTTGGTCTACCCCCCCCCATGAGTGGTGATCGAGTGTGTGTGCAT GTTTGCATACGTGATCGCACGCACGCATGTACGCTTCTTTCAGAGAGCAG CTAAGACCTGTTGTAAGTGTTATGTATGAGGCGGAGTTTTGTACGTGGCG GGCATGATGACGACACACGGTCTGGGTACCGCCCACACAATGAATGAGTG AACGGCCGGGACTTTTTCCTTTGAGTGCCAGAGAGGGCAATTTGTGAGAG AAGGGGAATAAGACGCACGG back to topprotein sequence of EsuBft1137_13a-0001 >EsuBft1137_13 ID=EsuBft1137_13|Name=EsuBft1137_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=304bp
MNAGLENGVRYPLAARHRGIDPWLFLDLRAARKWVLNNSDGMEVLNLFSY TGGIAAAAACGGAASVWNVDFSASAHEVGRASLKLNAGSAGECKCEWMKR DVLPTIRQLAGTPTKDYRADRRGRNAKVSGGRHSWDAGGRYNQGGYANRN SRGGGGGGGGGSGGGQRGGRGSGERSNGYGDVRGGRSGGEQGRGGGEEKD LKAKQFDLVFLDPPTWSKSKHGAVDLVRDYQTLFKPSLLATKEGGVVVAT NHVSTVDCAEWVENLSKCAAKAGRTVDSVQVLLPEDDFPSPDGRHPLKVA IVHV back to topmRNA from alignment at Scaffold_633:343169..349505- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1137_13a-0001 ID=EsuBft1137_13a-0001|Name=EsuBft1137_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=6337bp|location=Sequence derived from alignment at Scaffold_633:343169..349505- (Ectocarpus subulatus male Bft15b) ATGAACGCAGGTAGGCCTAATTGTAGAGAGAAGAGACGCCGCAGGCGTCT
TATTTCTTCGTTTCCCGGCCCCACCCACACCACACGCGCACCGCTCCGTT
GAGATTCTTCTATTCTTTTCTTCCCAATTTGTTCTTGTTCGTTTATTCCT
CAACCACAAATGAACGTAGGTAGGCCTGGAGAACGGGGTGCGGTACCCTC
TTGCCGCGAGGCACCGCGGGATAGACCCCTGGCTCTTCCTCGACCTCAGG
GCGGCCAGGAAGTGGGTGCTGAACAACAGCGATGGCATGGAGGTGCTCAA
TCTGTTCAGGTAATGTTTGACTTGCGGGCGTGACGCTGTACTCGTTGGGG
GTAGGTACCAGCGGCGATCGTGAAGGAGTTTTTTTTTTTCTTGAACGTAA
CGGATACTCCCGGTGGTGCTGTTTATTCGTCTGTTTTTTTTAGAGAATAT
ACTCTATATTCAAAGAGAGATTGCCCTTTTTTTCGAAATAGTACGTACCA
TAGCCGCCGAAGCTTTTTTTTGTTTAGTTTTTGGCGGGGGCGGACGTTGT
CTATGAAACGGTGCTCCTTTCCGAACACATTTTCATCCCCCCCGTTGTTA
TTGTCCAGCTACACTGGAGGGATTGCTGCCGCGGCGGCGTGCGGGGGAGC
CGCGAGCGTGTGGAACGTCGACTTCTCCGCTAGCGCCCACGAGGTACGGC
GGGAGTGAAGCTGCTGCTTTCGCTGGTGTTGGTAGTACGTGTATGTGTGT
GGCTGTTGGTAGGGGTGGTGGTGACGGTGTTGTTGTTGTTGTTGTTGTTG
TTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTT
GCTTTTGTTGGTGCCGATGGTGTCTTCGTCGTTCTTGCCATAGTCATCCT
CTTTTTTGGTCGTTCTTTTCGTCGCCGTTGCCTCGGTGTTCGTCCTTATC
GTTGCCGTTAAAGTGGTCCCAGTCTCTGTTTTTTTCTGTCCTTGGATACA
AAGTGTTGGGGCGTTGGTGTTCTCTTGCCACAAGGACGCCGCGCAAGTTG
TGATCGTTTCAGTTGATCAACAGAAATGGAACTCAGGCGATTTCTCAGTC
CTGCGGGGACCACCACGGAAGGTCGAGAACACCTCCGGCGACGCAATTCC
CCGATGAGAAATTGACCACTTCCAGGGTGGAGAAGGGCTCACCATTTCGT
TTCGAAATAAAAGAGAGTCAAATCGTTCCCTGTGTGTACATTCAACCTGC
CTCTTTTCTTCGAACAAAAGACGAGTGTGTTCGAGACTGTTTCTGCCACA
ACACACTGTTCCTTCCTCCTCCCTGCTCCGCCCTCTCGAGGACGCGTGTT
CCAATGGCCTAACAACTAAGGCATGCAAATCGTCGACCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCNCCCGGCTTTGCAAATGTTCTAAATAT
TTTGCGACTACGGCTGCACGGCTACAAGTACACCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNCCGATATTGAATTGAAACAGGTTGGGAGGGCGAGCTTGAAGCTCAA
CGCGGGCTCGGCCGGAGAGTGCAAGTGCGAGTGGATGAAGCGGGACGTAA
GTCCAAGAAACAGGCAGGCTTGCTGGCCGTTCCGTAAAGCTTAAGGGTTT
GGGTCAGGATTACGGAAGTACGGACGGCGCGTTGAGCCAACCACCTTGCG
TCTCAGCAGTGAGGCACGCGTGCGTTCTGATTGGTCAAAGGGTCAGATTG
TTCGGGCGGAAAAGGGGTGCACGTTGTCAAAACTTAGTTGCAGCAAGGCG
TCGATCGATTTTGATACACGACCGGTGTGCTTGATCTTTTCTTGAGAACC
CACTTCAATAAAAATAAAAACATTTTCCAGTGCTTCTCCGACAGCACCCT
CGTACGTGTCGACGTCGATGCACCAAGGACGTACAATTGCATTGCTGTGC
ATTACAACTCCTGTCTTCTGTCTGCATCAGTTTTCCCTGCACGAACCCGT
AGGGATGTACACGCAGGTTGTTCGGCTTCGGTTTTCAGTCATTCCCTTTG
CACACAAGGAAACCGCGTAGCCTCCCCCCTCCTGCACATGTACTAGTGCT
GAATAAAACCCTGATTCTCGACCCCCGATTCAGTGCCACAGATACGGCTC
TGAACGTGTCACATACCAGCGAGCCCCCGCCTTCCGCCTTTCTTCCATGT
TGCTCCTTTTTTTGTTTTTGTGGGCTGTGTATGTATTCGCACAGGTCTTG
CCGACTATCAGACAGCTGGCCGGTACTCCGACCAAGGACTACCGAGCGGA
CAGGCGTGGCCGAAACGCGAAAGTGTCGGGGGGGAGACACAGCTGGGACG
CCGGAGGGCGGTACAACCAGGTGTGTAAGACAGAGAGTCTTGTCTTGCGG
CGTGTTGTGTGTTCGGCAAAGGCTTTCATTCGGTATTCGTCCGCGCGACT
CATTGATGCAGATGGCGGACTTGTCGTGAGCTACACCTGTTAGAGTACTC
AGTCACCTGACAGAACAGTCTAACGGACTACGCACCGGTCTGCGATTAAT
GCACGTGAGGATCAGCCTTGAGGTTGATATCTTTTACCACTGAACGAGCA
TCGCTCACGAGAGCGGGTGCGGCTGAGAAGCCTTTTCTCAGTTACTGCAA
CACAACCAACGCCCACGGCGCTCTTATCACTTTTTTGCACGTTAACTGCC
AAGTTTTCTCAAGGTCGGGAGCTCTAACCTTTTGCTGCTTCATCCCTTCG
GTTCTTGGCGACTAGTAAGCGGCCACTGTTGTGCCGAGGCGCGCGCTGGG
GGGGGGAGCGACGGGCAGTACGATGTACCCCGCCATGCCGTGTGTGGGTT
AAACAAGACTGTTGAGCGAGGACAAAGAAGAACCACACTCGTTTTCGCCA
AAAATCGTGCCAAATTCTCGCTCGCGGCCTCTGTCTTAAAAATTAACACA
CAGGGGGGGTACGCAAACCGCAACTCTCGAGGAGGCGGCGGCGGCGGCGG
CGGCGGCAGCGGCGGTGGCCAGCGAGGGGGGCGGGGCAGCGGCGAGCGAT
CCAACGGCTACGGGGACGTGAGGGGGGGTCGGTCTGGGGGCGAGCAGGGG
AGGGGGGGCGGAGAAGAGAAGGACTTGAAAGCCAAGCAGTTCGACTTGGT
CTTCTTGGACCCCCCGACGTGGTCCAAGTCCAAGCACGGGGCAGTAGACC
TTGTCAGGGACTACCAGGTCTGTTGTGTGGATGTGTGGCACGCGTTGGGT
GATGTCATCGCCTCCAACTTTTTTTTTCTGCTACACACAGACGTATTTGT
TTCGTTTGGTGTTACCAAGAATATTCTTCATACAGGGTCGAGTCCTAGAT
CCCATGTCCGTTGAAGTCTCTTTGGATACATGACAACATTCCACGGAGTC
TAAAGGCTCACACGCTCCTCCTGCGTCTCTTTGAAGTAAGTATACCCCGC
CCTCGTGGTGCATGCGTTCGTGGTCACATCACAGACGCTGTTCAAGCCGT
CGCTGCTAGCCACCAAGGAAGGGGGAGTCGTCGTTGCCACCAACCACGTG
TCTACGGTGGACTGCGCGGAGTGGGTGGAGAATCTTTCGAAGTGAGTGTT
TCTGTGTTGCTGTGTCTGTGTGTCTGTGTGTTTTTATTGACCGCGCTAAC
CGGCTGACCAATGAAAAGACGTCAGTCTTAGTGCGGTTGAAAACACAAAA
CACTTCTATCTACCATGAACTGGGACCCCGTGAGGGGGCAGCATGGGGGA
GGCTAAACTATCCTTCGGATTAANCTTACTACCTTGTATTCGAGTTCGTT
TAGGAGTGTGTGTGTGAGAGAGAGAGTGAGACAGACAGACAGAGGCAGAG
GTAGAGACAGAGACAGAGACAGAGACAGAGACAGAGACAGAGACAGAGAC
AGAGACAAAGACAAAGACAAAGACAGAGACAAAGACAGGGACAAAGACAT
AGATAAGAGACAGACTGAGAAAGAAAGAGAGAGATGGATAGAGGGAGAGG
GGGGGCGAGAGGGAGCAAAAGAGAGAGGGCGATTTTCAATATGTCCCCGC
GAACAACACGTAGGAAGCGTGTAGGAAGCACGAGATGAACGACCTTTTTT
TTTCTTGGCGTTTTTATCCCTACCTCTCCCTTCCCGTGTTCCAAGTGTAC
TCGTGGGAGAAAAGGTATACTTGGCCTGGTACAGTTTCCCGTACTTTTGT
GCCGACATGTTTTGTGCCCGTTCTCGTTGTTTCTCTTCTTGTGGTTTCAG
CCGTAACAATGCGAGACTGCCGCTGAGATGACGAGCACGAGAGTCGCGTT
TGCGCAACGATGAAGCGTTTGGTCCCAAGCGGCTCGCTGCACCCCGATTG
GCGATGGAAACCCAACCTTCAGATGCCGACATCTCCGCGGAAACAACACA
GATCTCCCCCCATTCCCCCCCCCCCCCGCAGAAAAAGTAGAAAAAGGCTT
CGTAGATAAGAAAAGATCGTCCGAGGTGTGGGCATCCAGACAGTTGCGAG
AGAAGCGGTGCTGCTCCGTCTCGAACGAAAAAGGGATGAGCAATCAATGG
TCGAAACAACGTGTTCATTGGGCGAGCAACGTCACGCCGGCAGCCTCCGT
TCGCCTCGTCTTCATTTTCCAAGCGTCCGCCTCGTATTCGTTTTCCGGCA
CAGGTGCGCCGCGAAAGCGGGTCGAACGGTGGATTCCGTCCAAGTCCTGC
TCCCCGAGGATGACTTCCCCAGCCCGGATGGCAGACATCCGCTCAAGGTG
GCCATCGTTCACGTTTGACGTGAGTGAGAGGTGGGGGGGGCATCATAGCG
ACGTAGAACATCCACTCAAGGTTACCATCGCTCACGTTTGACGTGAAGGA
GAGGTGGTGGTGGTTAGGAGGGAGGATCGCGATGTAGAACATCCGCTCAA
GGTGGCCGTCGTTCACGTTTGACGTGAAGGAGAGGTGGGGGGGCAGCATT
AGGGGTGTAGAGCATCCGCTCAAGGTTGCCATCGTTGACGCGGATGACAG
GTAAGGAGGTGGCCCGTCGATGACAAACGTAGAGAAGGCGAGCACACGCG
GTTGGCGCTTGTGCAACAACGAAACGAACGCGTTACAACAGTGTCGGATA
TTTGTGTCTCCGCTGGTTCATCCGTCGCTACAAGTAAATGTCGATGATCT
TCTCTTCTTGCCCAGCACGCCAGGAGGAGCGTCGTTCGACGTTTTCCTCG
GTGGGAGCGGTGGGGGAGGAAAATCTTCCAACCAAAGTGGTCGTCGTTGT
TGTTGTGCACCGTGTCCCACGGCAATCTGTTTAACATAGTGCGGCTCGGG
GAGCGGTGGGGGAGGGGCGTTAGTTACCAATCTTCACCCCTACAGCCAGG
AGGTGTAGTGTTTGTGGTGCATCCAAGTCAAAGACCTTCTTTTTGGGGCG
CTAGACCAATTAGAACAACGGGGGTGGACCAGCGACCAATAGTGTCCACC
AGGGCACTCGTTTGGTGGCACCACCGCAACGTCCGTGCGCGTACGCAAAA
AAGTACTTGCTGCTTAACCAAGAGTGGTGCTGCCTTCGCCATGCGCATCG
ATTGAAAACGGGGCCTCTGCCCAAGATGGCGTGCGGTTGTGGCTGCGCAT
TAGCAGCACGAAGAAAGTCTGGCTTCTTCTCAACGAAAAACATACCACGA
CAATGCAGCTGTGCAGGGCACCTTTCCTGCCTTTGATAGACTTTGGTATA
CAAGCAACGTTGGCGAGGGGGAGGGGGGGGGGGGGGGNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGGGGTACCTGACGC
ATTGAGACCACGAGGGACCACTACTTTCACAGTATGAGCTTTCGAAACCA
AACAAAACATGATTTTATCATATGCATATATAGTCGATGCATGATGTAGA
AGGTTTCTTGACCACTCACTCACTTGGTCTACCCCCCCCCATGAGTGGTG
ATCGAGTGTGTGTGCATGTTTGCATACGTGATCGCACGCACGCATGTACG
CTTCTTTCAGAGAGCAGCTAAGACCTGTTGTAAGTGTTATGTATGAGGCG
GAGTTTTGTACGTGGCGGGCATGATGACGACACACGGTCTGGGTACCGCC
CACACAATGAATGAGTGAACGGCCGGGACTTTTTCCTTTGAGTGCCAGAG
AGGGCAATTTGTGAGAGAAGGGGAATAAGACGCACGG back to topCoding sequence (CDS) from alignment at Scaffold_633:343169..349505- >EsuBft1137_13a-0001 ID=EsuBft1137_13a-0001|Name=EsuBft1137_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=915bp|location=Sequence derived from alignment at Scaffold_633:343169..349505- (Ectocarpus subulatus male Bft15b) ATGAACGCAGGCCTGGAGAACGGGGTGCGGTACCCTCTTGCCGCGAGGCA CCGCGGGATAGACCCCTGGCTCTTCCTCGACCTCAGGGCGGCCAGGAAGT GGGTGCTGAACAACAGCGATGGCATGGAGGTGCTCAATCTGTTCAGCTAC ACTGGAGGGATTGCTGCCGCGGCGGCGTGCGGGGGAGCCGCGAGCGTGTG GAACGTCGACTTCTCCGCTAGCGCCCACGAGGTTGGGAGGGCGAGCTTGA AGCTCAACGCGGGCTCGGCCGGAGAGTGCAAGTGCGAGTGGATGAAGCGG GACGTCTTGCCGACTATCAGACAGCTGGCCGGTACTCCGACCAAGGACTA CCGAGCGGACAGGCGTGGCCGAAACGCGAAAGTGTCGGGGGGGAGACACA GCTGGGACGCCGGAGGGCGGTACAACCAGGGGGGGTACGCAAACCGCAAC TCTCGAGGAGGCGGCGGCGGCGGCGGCGGCGGCAGCGGCGGTGGCCAGCG AGGGGGGCGGGGCAGCGGCGAGCGATCCAACGGCTACGGGGACGTGAGGG GGGGTCGGTCTGGGGGCGAGCAGGGGAGGGGGGGCGGAGAAGAGAAGGAC TTGAAAGCCAAGCAGTTCGACTTGGTCTTCTTGGACCCCCCGACGTGGTC CAAGTCCAAGCACGGGGCAGTAGACCTTGTCAGGGACTACCAGACGCTGT TCAAGCCGTCGCTGCTAGCCACCAAGGAAGGGGGAGTCGTCGTTGCCACC AACCACGTGTCTACGGTGGACTGCGCGGAGTGGGTGGAGAATCTTTCGAA GTGCGCCGCGAAAGCGGGTCGAACGGTGGATTCCGTCCAAGTCCTGCTCC CCGAGGATGACTTCCCCAGCCCGGATGGCAGACATCCGCTCAAGGTGGCC ATCGTTCACGTTTGA back to top
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