EsuBft1137_12a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1137_12a-0001
Unique NameEsuBft1137_12a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_633contigScaffold_633:351898..352988 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog6500.XP_005096957.1
ProteomeIdEsuBft1137_12
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl33208|Metazoa
Length103
Hectar predicted targeting categorymitochondrion
Evalue8.77e-10
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,39TZY@33154|Opisthokonta,3BI15@33208|Metazoa
Date last modified2016-06-14
Date creation2016-06-14
Descriptionprotein kinase activity
COG categoryJ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1137_12aEsuBft1137_12aEctocarpus subulatus male Bft15bgeneScaffold_633 351898..352988 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1137_12a-0001-exonEsuBft1137_12a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_633 351898..352405 -
EsuBft1137_12a-0001-exonagat-exon-78939Ectocarpus subulatus male Bft15bexonScaffold_633 352465..352988 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1137_12a-0001-exonagat-three_prime_utr-1296Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_633 351898..352041 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1137_12a-0001-cdsEsuBft1137_12a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_633 352042..352405 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1137_12a-0001EsuBft1137_12Ectocarpus subulatus male Bft15bpolypeptideScaffold_633 352042..352988 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1137_12a-0001 ID=EsuBft1137_12a-0001|Name=EsuBft1137_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1032bp|location=Sequence derived from alignment at Scaffold_633:351898..352988- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTAGTAGCCACCGTCAACCTCGGTGGCAGGCTTGCCCACAACCGTGC
AGTCCGGACTAAACAGAAGCGATTCAACCGACGGGAATTGCAGTTCGAAG
CAGCACGGTGTGCAGTGACTAATCGGTTCCTCCTCAACCTCGACACACGA
CTGGACGAGCGAACAACCACCGCCGCGGAATTGGCGACCGACTTTACCAA
TGCTCTCCTCGACGCAGCGCGGACGACCCTGGGGGAGGAACCGCGGAGAC
GCCGCACGCAGGAGTGGTGTGAGACTCCAGAGACGCGAGCAGCGCTGGAG
CAGGCCCTTACCAAACGTCGGGAATCGCGCCGGGCGATGAGGGGCAACTG
GAACTCACCGACGTGGAGGGTTCTCAACGCAGCGTGTAAGGGAGTGGCTA
CAGCAGTCGAAACGGGCATCTATGCCCACCTGGACGGATATGTGACTGAG
CTCGAAGAAATCTACAAAGATCGCGACATGCGAGGACTGTACCAACGCCT
CAAGAGATCAGTCGGCCTCAGCGGGGACGACATCCTCCAGCGGTGGGCGA
GATTCTTCAGCACCCTACTCAACACCAAATCCCCCACCCTGAACCCAGAC
ATCATCGAACGAGTGACGCAGCGGCCAGCGACACGTGACACTCAACGGTT
GGGAGATGTGCCAGAACTCGAGGAGGTGGCACGGGCAACGAAAGGCCTCA
AGAACTGGAAGGCACCCGGCCATGACTCCCTCCCTGCCGAGTTGCTCAAG
ATCGATGACGACGAACCCTTCGTCCTGGGACACCTCCATACCATCCTCGT
CAAGGTGCTGAACGGAGGAGATATTCCGCGAGAGTCGAAGGATGCCACCA
TCAAGGTGCTGTACAAGAATGGCTACCGGTCCAACTGAAACAACTACAGG
GGGATTTCGCTACTATCTCACGTAGGCAAGGTCCCCATCAAGATCATCAC
CAACCGTCTAAGCGCCTTCTGCGAAGCCAACAACATCCTCCCGGAGGAAC
AGTGCAGATTTCGACCCGGGCGATCCACCGTC
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protein sequence of EsuBft1137_12a-0001

>EsuBft1137_12 ID=EsuBft1137_12|Name=EsuBft1137_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=295bp
MVVATVNLGGRLAHNRAVRTKQKRFNRRELQFEAARCAVTNRFLLNLDTR
LDERTTTAAELATDFTNALLDAARTTLGEEPRRRRTQEWCETPETRAALE
QALTKRRESRRAMRGNWNSPTWRVLNAACKGVATAVETGIYAHLDGYVTE
LEEIYKDRDMRGLYQRLKRSVGLSGDDILQRWARFFSTLLNTKSPTLNPD
IIERVTQRPATRDTQRLGDVPELEEVARATKGLKNWKAPGHDSLPAELLK
IDDDEPFVLGHLHTILVKVLNGGDIPRESKDATIKVLYKNGYRSN
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mRNA from alignment at Scaffold_633:351898..352988-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1137_12a-0001 ID=EsuBft1137_12a-0001|Name=EsuBft1137_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1091bp|location=Sequence derived from alignment at Scaffold_633:351898..352988- (Ectocarpus subulatus male Bft15b)
ATGGTAGTAGCCACCGTCAACCTCGGTGGCAGGCTTGCCCACAACCGTGC
AGTCCGGACTAAACAGAAGCGATTCAACCGACGGGAATTGCAGTTCGAAG
CAGCACGGTGTGCAGTGACTAATCGGTTCCTCCTCAACCTCGACACACGA
CTGGACGAGCGAACAACCACCGCCGCGGAATTGGCGACCGACTTTACCAA
TGCTCTCCTCGACGCAGCGCGGACGACCCTGGGGGAGGAACCGCGGAGAC
GCCGCACGCAGGAGTGGTGTGAGACTCCAGAGACGCGAGCAGCGCTGGAG
CAGGCCCTTACCAAACGTCGGGAATCGCGCCGGGCGATGAGGGGCAACTG
GAACTCACCGACGTGGAGGGTTCTCAACGCAGCGTGTAAGGGAGTGGCTA
CAGCAGTCGAAACGGGCATCTATGCCCACCTGGACGGATATGTGACTGAG
CTCGAAGAAATCTACAAAGATCGCGACATGCGAGGACTGTACCAACGCCT
CAAGAGATCAGTCGGCCTCAGCGGGTGACAAGCGGGGGGCAGCAGTTCGT
CGCGGATGAGAACGGCGTGTTGCTCCGGAACAGGGACGACATCCTCCAGC
GGTGGGCGAGATTCTTCAGCACCCTACTCAACACCAAATCCCCCACCCTG
AACCCAGACATCATCGAACGAGTGACGCAGCGGCCAGCGACACGTGACAC
TCAACGGTTGGGAGATGTGCCAGAACTCGAGGAGGTGGCACGGGCAACGA
AAGGCCTCAAGAACTGGAAGGCACCCGGCCATGACTCCCTCCCTGCCGAG
TTGCTCAAGATCGATGACGACGAACCCTTCGTCCTGGGACACCTCCATAC
CATCCTCGTCAAGGTGCTGAACGGAGGAGATATTCCGCGAGAGTCGAAGG
ATGCCACCATCAAGGTGCTGTACAAGAATGGCTACCGGTCCAACTGAAAC
AACTACAGGGGGATTTCGCTACTATCTCACGTAGGCAAGGTCCCCATCAA
GATCATCACCAACCGTCTAAGCGCCTTCTGCGAAGCCAACAACATCCTCC
CGGAGGAACAGTGCAGATTTCGACCCGGGCGATCCACCGTC
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Coding sequence (CDS) from alignment at Scaffold_633:351898..352988-

>EsuBft1137_12a-0001 ID=EsuBft1137_12a-0001|Name=EsuBft1137_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=888bp|location=Sequence derived from alignment at Scaffold_633:351898..352988- (Ectocarpus subulatus male Bft15b)
ATGGTAGTAGCCACCGTCAACCTCGGTGGCAGGCTTGCCCACAACCGTGC
AGTCCGGACTAAACAGAAGCGATTCAACCGACGGGAATTGCAGTTCGAAG
CAGCACGGTGTGCAGTGACTAATCGGTTCCTCCTCAACCTCGACACACGA
CTGGACGAGCGAACAACCACCGCCGCGGAATTGGCGACCGACTTTACCAA
TGCTCTCCTCGACGCAGCGCGGACGACCCTGGGGGAGGAACCGCGGAGAC
GCCGCACGCAGGAGTGGTGTGAGACTCCAGAGACGCGAGCAGCGCTGGAG
CAGGCCCTTACCAAACGTCGGGAATCGCGCCGGGCGATGAGGGGCAACTG
GAACTCACCGACGTGGAGGGTTCTCAACGCAGCGTGTAAGGGAGTGGCTA
CAGCAGTCGAAACGGGCATCTATGCCCACCTGGACGGATATGTGACTGAG
CTCGAAGAAATCTACAAAGATCGCGACATGCGAGGACTGTACCAACGCCT
CAAGAGATCAGTCGGCCTCAGCGGGGACGACATCCTCCAGCGGTGGGCGA
GATTCTTCAGCACCCTACTCAACACCAAATCCCCCACCCTGAACCCAGAC
ATCATCGAACGAGTGACGCAGCGGCCAGCGACACGTGACACTCAACGGTT
GGGAGATGTGCCAGAACTCGAGGAGGTGGCACGGGCAACGAAAGGCCTCA
AGAACTGGAAGGCACCCGGCCATGACTCCCTCCCTGCCGAGTTGCTCAAG
ATCGATGACGACGAACCCTTCGTCCTGGGACACCTCCATACCATCCTCGT
CAAGGTGCTGAACGGAGGAGATATTCCGCGAGAGTCGAAGGATGCCACCA
TCAAGGTGCTGTACAAGAATGGCTACCGGTCCAACTGA
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