EsuBft1137_11a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1137_11a-0001
Unique Name	EsuBft1137_11a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_633	contig	Scaffold_633:360351..361918 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7G873
ProteomeId	EsuBft1137_11
Protein domains	SSF56672
Protein domains	Coil
Protein domains	PTHR19446
Protein domains	IPR000477
Owner	apollo_admin@sb-roscoff.fr
Note	probable rna-directed dna polymerase from transposon x-element os:drosophila melanogaster gn:x- [Automatic annotation]
Nb exon	2
Max annot lvl	2759\|Eukaryota
Length	1089
Hectar predicted targeting category	other localisation
Evalue	3.7e-101
EggNOG OGs	COG0553@1\|root,COG2940@1\|root,COG5076@1\|root,KOG1075@1\|root,KOG0383@2759\|Eukaryota,KOG0384@2759\|Eukaryota,KOG1075@2759\|Eukaryota,KOG1081@2759\|Eukaryota,KOG1474@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14
KEGG rclass	RC00003,RC00004,RC00039,RC00041,RC00060,RC00181,RC00496
KEGG ko	ko:K11367,ko:K11424,ko:K11654,ko:K13506,ko:K14437
KEGG Reaction	R00851,R03875,R03938,R04866,R04867,R09380
KEGG Pathway	ko00310,ko00561,ko00564,ko01100,ko01110,ko05202,map00310,map00561,map00564,map01100,map01110,map05202
KEGG Module	M00089
EC	2.1.1.43,2.3.1.15,3.6.4.12
Description	acetylation-dependent protein binding
COG category	BK
BRITE	ko00000,ko00001,ko00002,ko01000,ko01004,ko03021,ko03036

Cross References

External references for this mRNA


Database	Accession
GO	0006259
EC	3.1
GO	0004518
GO	0016740

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1137_11a	EsuBft1137_11a	Ectocarpus subulatus male Bft15b	gene	Scaffold_633 360351..361918 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1137_11a-0001-exon	EsuBft1137_11a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_633 360351..361026 +
EsuBft1137_11a-0001-exon	agat-exon-78938	Ectocarpus subulatus male Bft15b	exon	Scaffold_633 361506..361918 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1137_11a-0001-cds	EsuBft1137_11a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_633 360351..361026 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1137_11a-0001	EsuBft1137_11	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_633 360351..361918 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_633:360351..361918+
coding sequence from alignment at Scaffold_633:360351..361918+

spliced messenger RNA

>EsuBft1137_11a-0001 ID=EsuBft1137_11a-0001|Name=EsuBft1137_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1089bp|location=Sequence derived from alignment at Scaffold_633:360351..361918+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGTTTGGGGGGAAGGGGATGATCCAGCTGATGGTACTGCTATACAA
TTGGGTGTGGAAAAACGAGTATACGCCAAGTAGATGGAGGGAAGGAGTGG
TTGTGAACTTGTTCAAAAAAGGAGACAATACTGACCCAGGAAACTACAGG
GGGATCACACTGTTGAACACGGTAGGAAAAGTGTTCTGTAAGCTGCTGAA
CGATAGGATAGTGGGAGTATTGGAGAAGGAACATAGCATTAGTGAGGGCC
AGGCAGGTATCCGCAAGAAGAGGGGGTGCGTAGACCACGCATGCAGGGTA
GGGAGAATCATCCAAGGTAGAAAGAGGGCGGGAAGGTCGACGTACTTCTT
CTTCCTGGACGTGAAAAAGGCATACGACACCGTATGGAGAAATGGGTTGT
GGAAACAACTGTCCAAATACGGGATCAAGGAGAAAATGTGGAGAGTGCTG
AAGAACATGACAGAGTGCACGAAAGGCGCGGTCATGTTAGACGGAGAACT
GTCAAAAATCTTCGACATAGAGCAGGGGGTCCCACAAGGTTGCACGCTGT
CCCCAACATTGTTCCAGGTGTTCATCAACGATCTGTTGGAAGTCGTAGAG
GCAGTCCGGAAGGGAGTAAAAGTAGGGGACACGGAAACGTCGGTTTCAGG
AATGCTGTTTGCGGATGATTTTGTCGAGGACGTATGGAAGGGGCTCGACA
TCGACGAAGATGAAACGCTGGAAACGGAGGGTCTACAGGGGTTCAAGGAG
AAGATATCTGTTGCTTGTGCCGAGAGAGAAGAACAGAATCTGAGGAAAGA
ATCCAAGGATAAGGAGGGTCTAGAAGTGTACGGAATGTTGAAGGAAGGAA
TAGGGTTCAAGGACTACCTACATGGACCAATGGATGCAGGAACAAAGCTT
AAGGTCAAATTCAGGACCGGGGACATAGGCCTTCGAGAACGTCGACGAAG
ACATAGGACGGTAGACGAGGAAGACGACGAGTTCAAATGTGATTGCGGCT
TCGAATGCGAAGACCGTGTTCATGAAGTCGCGGAATGTCCGTTGTACAAG
AAGGAGAGGGAAGTGTACGCGGCTGGGCTGGGAAAATAG

protein sequence of EsuBft1137_11a-0001

>EsuBft1137_11 ID=EsuBft1137_11|Name=EsuBft1137_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=362bp
MKFGGKGMIQLMVLLYNWVWKNEYTPSRWREGVVVNLFKKGDNTDPGNYR
GITLLNTVGKVFCKLLNDRIVGVLEKEHSISEGQAGIRKKRGCVDHACRV
GRIIQGRKRAGRSTYFFFLDVKKAYDTVWRNGLWKQLSKYGIKEKMWRVL
KNMTECTKGAVMLDGELSKIFDIEQGVPQGCTLSPTLFQVFINDLLEVVE
AVRKGVKVGDTETSVSGMLFADDFVEDVWKGLDIDEDETLETEGLQGFKE
KISVACAEREEQNLRKESKDKEGLEVYGMLKEGIGFKDYLHGPMDAGTKL
KVKFRTGDIGLRERRRRHRTVDEEDDEFKCDCGFECEDRVHEVAECPLYK
KEREVYAAGLGK

mRNA from alignment at Scaffold_633:360351..361918+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1137_11a-0001 ID=EsuBft1137_11a-0001|Name=EsuBft1137_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1568bp|location=Sequence derived from alignment at Scaffold_633:360351..361918+ (Ectocarpus subulatus male Bft15b)
ATGAAGTTTGGGGGGAAGGGGATGATCCAGCTGATGGTACTGCTATACAA
TTGGGTGTGGAAAAACGAGTATACGCCAAGTAGATGGAGGGAAGGAGTGG
TTGTGAACTTGTTCAAAAAAGGAGACAATACTGACCCAGGAAACTACAGG
GGGATCACACTGTTGAACACGGTAGGAAAAGTGTTCTGTAAGCTGCTGAA
CGATAGGATAGTGGGAGTATTGGAGAAGGAACATAGCATTAGTGAGGGCC
AGGCAGGTATCCGCAAGAAGAGGGGGTGCGTAGACCACGCATGCAGGGTA
GGGAGAATCATCCAAGGTAGAAAGAGGGCGGGAAGGTCGACGTACTTCTT
CTTCCTGGACGTGAAAAAGGCATACGACACCGTATGGAGAAATGGGTTGT
GGAAACAACTGTCCAAATACGGGATCAAGGAGAAAATGTGGAGAGTGCTG
AAGAACATGACAGAGTGCACGAAAGGCGCGGTCATGTTAGACGGAGAACT
GTCAAAAATCTTCGACATAGAGCAGGGGGTCCCACAAGGTTGCACGCTGT
CCCCAACATTGTTCCAGGTGTTCATCAACGATCTGTTGGAAGTCGTAGAG
GCAGTCCGGAAGGGAGTAAAAGTAGGGGACACGGAAACGTCGGTTTCAGG
AATGCTGTTTGCGGATGATTTTGTCGGTATGTCGGACACCCTGAGGGACT
GCAGCTGCAAATTGACGCGGCGAAGAAGTTTACTGATAAAGTGAAGATTT
TCTGCCAACGTTAAGAAGAGTGCCGTCATGGTATGCAACGAGAACAAGGA
GGAACCAGTAGAACATAGATGGAAGTGGGGGATCGAGGAGATTGCAGTAG
TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNAAGAGACGCGAGGAAGCTGACATGCCAGTATC
GCATGTGCGGGATGGGAGAGGAGACGTTGCCGAGAATTGCATGGGAGGCG
AAGTGGGCAAACAAAAAGAGGTGTTGACAACCTACGGAATGGATCAAGGT
TGTAGAGGACGTATGGAAGGGGCTCGACATCGACGAAGATGAAACGCTGG
AAACGGAGGGTCTACAGGGGTTCAAGGAGAAGATATCTGTTGCTTGTGCC
GAGAGAGAAGAACAGAATCTGAGGAAAGAATCCAAGGATAAGGAGGGTCT
AGAAGTGTACGGAATGTTGAAGGAAGGAATAGGGTTCAAGGACTACCTAC
ATGGACCAATGGATGCAGGAACAAAGCTTAAGGTCAAATTCAGGACCGGG
GACATAGGCCTTCGAGAACGTCGACGAAGACATAGGACGGTAGACGAGGA
AGACGACGAGTTCAAATGTGATTGCGGCTTCGAATGCGAAGACCGTGTTC
ATGAAGTCGCGGAATGTCCGTTGTACAAGAAGGAGAGGGAAGTGTACGCG
GCTGGGCTGGGAAAATAG

Coding sequence (CDS) from alignment at Scaffold_633:360351..361918+

>EsuBft1137_11a-0001 ID=EsuBft1137_11a-0001|Name=EsuBft1137_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1089bp|location=Sequence derived from alignment at Scaffold_633:360351..361918+ (Ectocarpus subulatus male Bft15b)
ATGAAGTTTGGGGGGAAGGGGATGATCCAGCTGATGGTACTGCTATACAA
TTGGGTGTGGAAAAACGAGTATACGCCAAGTAGATGGAGGGAAGGAGTGG
TTGTGAACTTGTTCAAAAAAGGAGACAATACTGACCCAGGAAACTACAGG
GGGATCACACTGTTGAACACGGTAGGAAAAGTGTTCTGTAAGCTGCTGAA
CGATAGGATAGTGGGAGTATTGGAGAAGGAACATAGCATTAGTGAGGGCC
AGGCAGGTATCCGCAAGAAGAGGGGGTGCGTAGACCACGCATGCAGGGTA
GGGAGAATCATCCAAGGTAGAAAGAGGGCGGGAAGGTCGACGTACTTCTT
CTTCCTGGACGTGAAAAAGGCATACGACACCGTATGGAGAAATGGGTTGT
GGAAACAACTGTCCAAATACGGGATCAAGGAGAAAATGTGGAGAGTGCTG
AAGAACATGACAGAGTGCACGAAAGGCGCGGTCATGTTAGACGGAGAACT
GTCAAAAATCTTCGACATAGAGCAGGGGGTCCCACAAGGTTGCACGCTGT
CCCCAACATTGTTCCAGGTGTTCATCAACGATCTGTTGGAAGTCGTAGAG
GCAGTCCGGAAGGGAGTAAAAGTAGGGGACACGGAAACGTCGGTTTCAGG
AATGCTGTTTGCGGATGATTTTGTCGAGGACGTATGGAAGGGGCTCGACA
TCGACGAAGATGAAACGCTGGAAACGGAGGGTCTACAGGGGTTCAAGGAG
AAGATATCTGTTGCTTGTGCCGAGAGAGAAGAACAGAATCTGAGGAAAGA
ATCCAAGGATAAGGAGGGTCTAGAAGTGTACGGAATGTTGAAGGAAGGAA
TAGGGTTCAAGGACTACCTACATGGACCAATGGATGCAGGAACAAAGCTT
AAGGTCAAATTCAGGACCGGGGACATAGGCCTTCGAGAACGTCGACGAAG
ACATAGGACGGTAGACGAGGAAGACGACGAGTTCAAATGTGATTGCGGCT
TCGAATGCGAAGACCGTGTTCATGAAGTCGCGGAATGTCCGTTGTACAAG
AAGGAGAGGGAAGTGTACGCGGCTGGGCTGGGAAAATAG