EsuBft1137_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1137_10a-0001
Unique NameEsuBft1137_10a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_633contigScaffold_633:374074..375192 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1137_10
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length111
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1137_10aEsuBft1137_10aEctocarpus subulatus male Bft15bgeneScaffold_633 374074..375192 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1137_10a-0001-exonEsuBft1137_10a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_633 374074..375192 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1137_10a-0001-exonagat-three_prime_utr-1295Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_633 374074..374711 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1137_10a-0001-cdsEsuBft1137_10a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_633 374712..375029 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1137_10a-0001-exonagat-five_prime_utr-830Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_633 375030..375192 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1137_10a-0001EsuBft1137_10Ectocarpus subulatus male Bft15bpolypeptideScaffold_633 374712..375029 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1137_10a-0001 ID=EsuBft1137_10a-0001|Name=EsuBft1137_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1119bp|location=Sequence derived from alignment at Scaffold_633:374074..375192- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TCTGTCTGTCGTGCGGATCTAGTACAACCAACGAGACTTTCTAGTCACTG
GACACAAACACGGGCATACCCAGCAAACACTGCGGCCCTAGTAGTGAATA
ACATTCTAGAGTTTTCTTGCTCCATCGTCCCTGCAAGGAAACGAAAGAGC
CCGTGCCAGCAACATGTCAGGTGGAGTCTCGCAGCAGAAGCTCGCCGCTA
AACTCGGAGGTGTTAGGCGGGTGTCGACAGAATGCTTTGAGGATAAGCAG
ACCAGGGCCAAGGCGAGGATGGAGCAGGCACTCGTAGCTTCGAGGGGCTT
TTGCTCCAGTAGCCCACGCGAGACGGACGAGGAGGGTCACACGGCGCCGT
GGTGGACGGGGGCGCCGTGGGGGGTGCGGTTGGAATGCAGCAGGGAACCG
GGAGGAGTTCCACCGCAGGGAACCTACCCGAGACTGTGGGCCCTGGCGTT
CGGGACAGCGGCGGTGTCAGCAGTGGCGTAGCGGGCGGCACAACACACGA
GCCCGTTGATCGCGGAAAAAATTATTCGTTCCGAGAGAGCTGGAGTACTG
CATTCATGACGATTCTGGTGAATGTCAACTTGCCGCAGAGGAGGAAAACC
GCGCAACACTAATGTGCTTTTGAAAGAGGGCTAGAGGGCTAACAAAAGCG
CGGCGTTGCCGCGGACACTTCATTTCTGGTTGATTCGTGAGTGATTTCCT
GAGTGATCTTGCCTGTGACGAATGACACTGACAGATAATGAAGGGGATTC
GCAGTTAAGCGTTTCTATTTCTGATTTGGTGTACGTAGAGCGTCTGTAGT
TTCGCTTACGATGATACAGCCAATGATGTTTTCGAAAGGGGATTCGCGGT
TCGGGCGTTTCCATTCTTCAGTTTGAGTGTTTTGATGAGCAACAACTGTA
GTTCGTCTCCCTTCGATTATATCCGAGCGTTTATGGCGGTCTTATTCTCA
GAGGATAAGCTAGATGAGCATGAGGTCTTGTAAGGTAGGGAACCCACCAT
ACCCAGCCCCAACACTCCACGCCCCCAGATGTAGGGGGGGCGACGTGAGT
TCTTGAAATTGTGCTTTCCAAATGTAGGGGAAGGTACTGACACTGACACG
CACCCCCAGTCGAAGGGGG
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protein sequence of EsuBft1137_10a-0001

>EsuBft1137_10 ID=EsuBft1137_10|Name=EsuBft1137_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=105bp
MSGGVSQQKLAAKLGGVRRVSTECFEDKQTRAKARMEQALVASRGFCSSS
PRETDEEGHTAPWWTGAPWGVRLECSREPGGVPPQGTYPRLWALAFGTAA
VSAVA
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mRNA from alignment at Scaffold_633:374074..375192-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1137_10a-0001 ID=EsuBft1137_10a-0001|Name=EsuBft1137_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1119bp|location=Sequence derived from alignment at Scaffold_633:374074..375192- (Ectocarpus subulatus male Bft15b)
TCTGTCTGTCGTGCGGATCTAGTACAACCAACGAGACTTTCTAGTCACTG
GACACAAACACGGGCATACCCAGCAAACACTGCGGCCCTAGTAGTGAATA
ACATTCTAGAGTTTTCTTGCTCCATCGTCCCTGCAAGGAAACGAAAGAGC
CCGTGCCAGCAACATGTCAGGTGGAGTCTCGCAGCAGAAGCTCGCCGCTA
AACTCGGAGGTGTTAGGCGGGTGTCGACAGAATGCTTTGAGGATAAGCAG
ACCAGGGCCAAGGCGAGGATGGAGCAGGCACTCGTAGCTTCGAGGGGCTT
TTGCTCCAGTAGCCCACGCGAGACGGACGAGGAGGGTCACACGGCGCCGT
GGTGGACGGGGGCGCCGTGGGGGGTGCGGTTGGAATGCAGCAGGGAACCG
GGAGGAGTTCCACCGCAGGGAACCTACCCGAGACTGTGGGCCCTGGCGTT
CGGGACAGCGGCGGTGTCAGCAGTGGCGTAGCGGGCGGCACAACACACGA
GCCCGTTGATCGCGGAAAAAATTATTCGTTCCGAGAGAGCTGGAGTACTG
CATTCATGACGATTCTGGTGAATGTCAACTTGCCGCAGAGGAGGAAAACC
GCGCAACACTAATGTGCTTTTGAAAGAGGGCTAGAGGGCTAACAAAAGCG
CGGCGTTGCCGCGGACACTTCATTTCTGGTTGATTCGTGAGTGATTTCCT
GAGTGATCTTGCCTGTGACGAATGACACTGACAGATAATGAAGGGGATTC
GCAGTTAAGCGTTTCTATTTCTGATTTGGTGTACGTAGAGCGTCTGTAGT
TTCGCTTACGATGATACAGCCAATGATGTTTTCGAAAGGGGATTCGCGGT
TCGGGCGTTTCCATTCTTCAGTTTGAGTGTTTTGATGAGCAACAACTGTA
GTTCGTCTCCCTTCGATTATATCCGAGCGTTTATGGCGGTCTTATTCTCA
GAGGATAAGCTAGATGAGCATGAGGTCTTGTAAGGTAGGGAACCCACCAT
ACCCAGCCCCAACACTCCACGCCCCCAGATGTAGGGGGGGCGACGTGAGT
TCTTGAAATTGTGCTTTCCAAATGTAGGGGAAGGTACTGACACTGACACG
CACCCCCAGTCGAAGGGGG
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Coding sequence (CDS) from alignment at Scaffold_633:374074..375192-

>EsuBft1137_10a-0001 ID=EsuBft1137_10a-0001|Name=EsuBft1137_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=318bp|location=Sequence derived from alignment at Scaffold_633:374074..375192- (Ectocarpus subulatus male Bft15b)
ATGTCAGGTGGAGTCTCGCAGCAGAAGCTCGCCGCTAAACTCGGAGGTGT
TAGGCGGGTGTCGACAGAATGCTTTGAGGATAAGCAGACCAGGGCCAAGG
CGAGGATGGAGCAGGCACTCGTAGCTTCGAGGGGCTTTTGCTCCAGTAGC
CCACGCGAGACGGACGAGGAGGGTCACACGGCGCCGTGGTGGACGGGGGC
GCCGTGGGGGGTGCGGTTGGAATGCAGCAGGGAACCGGGAGGAGTTCCAC
CGCAGGGAACCTACCCGAGACTGTGGGCCCTGGCGTTCGGGACAGCGGCG
GTGTCAGCAGTGGCGTAG
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