EsuBft1136_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1136_5a-0001
Unique Name	EsuBft1136_5a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_141	contig	Scaffold_141:8452..10475 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	90675.XP_010436751.1
ProteomeId	EsuBft1136_5
Protein domains	PTHR10492
Protein domains	IPR010285
Protein domains	IPR027417
Owner	apollo_admin@sb-roscoff.fr
Note	atp-dependent dna helicase pif1 os:xenopus laevis gn:pif1 pe:2 sv:1 [Automatic annotation]
Nb exon	2
Max annot lvl	35493\|Streptophyta
Length	1863
Hectar predicted targeting category	other localisation
Evalue	8.14e-88
EggNOG OGs	COG0507@1\|root,KOG0987@2759\|Eukaryota,37Q72@33090\|Viridiplantae,3GCCF@35493\|Streptophyta,3HWI1@3699\|Brassicales
Date last modified	2016-06-13
Date creation	2016-06-13
KEGG ko	ko:K15255
EC	3.6.4.12
Description	ATP-dependent DNA helicase
COG category	D
BRITE	ko00000,ko01000,ko03029,ko03032

Cross References

External references for this mRNA


Database	Accession
GO	0003678
GO	0000723
GO	0097159
GO	1901363
GO	0006281

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1136_5a	EsuBft1136_5a	Ectocarpus subulatus male Bft15b	gene	Scaffold_141 8452..10475 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1136_5a-0001-exon	agat-exon-50893	Ectocarpus subulatus male Bft15b	exon	Scaffold_141 8452..8701 -
EsuBft1136_5a-0001-exon	EsuBft1136_5a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_141 8863..10475 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1136_5a-0001-exon	agat-three_prime_utr-1293	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_141 8452..8652 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1136_5a-0001-cds	EsuBft1136_5a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_141 8653..8701 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1136_5a-0001	EsuBft1136_5	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_141 8653..10475 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_141:8452..10475-
coding sequence from alignment at Scaffold_141:8452..10475-

spliced messenger RNA

>EsuBft1136_5a-0001 ID=EsuBft1136_5a-0001|Name=EsuBft1136_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1863bp|location=Sequence derived from alignment at Scaffold_141:8452..10475- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGATAGACGCTCCTGCAGGTACCGGTAAGACTTTCACAGAGAAATGTTT
GGCTTCAAGATTGAGGGGTGAAGATAAAGTGGTTTTAATCGTTGCATCGA
CGGGTATTGCCGCTTTGCAGCTGCCCGGAGGGTGGACAGCTCACAGCATG
TTCAAATTACCAATGGATGACAACCTAACGCCGTCATGTGTCTGTAACAT
CAGCAGTCAGACTCAAAGAGCAGAACTCATCCGTCAGTCCAACCTCATTA
TTTGGGATGAACTTCCCATGACTCACAGATACTGCGTTGAAGCTCTCGAC
AGAACTCTAAAAGACCTCATGGCCGTAGATCAACCCTTTGGAGGAAAGAC
CATTCTATTTAGCGGTGACTGGCGCCAAACAGGTCCAATTGTCAAAAACG
CTGCACCTACTGACACCGTCGACGCCGCATTTATCTCCAGCCCTCTCTGG
AAGGGTGTCATGCGTTTCAGACTCAACAAATCACAGCGAGACAAGGAAGA
CCCCCAGTATGCATCTTTTGTCAGGTCCATAGGAGAGGGTTCACGCCCAA
CAGTTACCATGTCCGATGGATCCAAGCTAACTCCACTAAACAACCACGAC
AACGAAGACACCGCCAACCATTTTCAGCTAAGGTACACGACCGACTTTGA
CGAACTGCTCCGCTTTGTGTACCCTGACCTCTCACAGCAGTCCCGTATAT
GGAACACTCGTGCTATCCTTGCAACCACTAACCACTCCATCGACCGTTCA
AACGACACGATTTCCGACAATCGCCCTGGCAACTATGTCTCTTTCTTCAG
TTCGGATTCTCTAATCTCGGACGAGAAAAACAGACGTACTGCTTTCGCGT
CTCCTGAGCACCTCAATCAGCTTAATGTCCAAGGCATACCGCCTCACGAA
CTCAAACTAAAAACTGACACCCTCGCTTTAATAACACGCAACCTCAACTT
CTCCGAGGGCCTCGTGAACGGCCAAAAGTGCGTCGTCCTCGCCGTCTCTG
CATCAAGTAGAGTGCTGCAAGTTCAACTTCTCACTGAAGAAAGACCCCGA
CCTATTGTTCTCATCCCGAGAATCAACTTCCAGGGTAAAGTAGGTCGCAA
TGGCATTTGCTTTACTCGAAAACAATTTCCTCTGAGAACCGCGTATTCAA
TGACCATTAACAAGAGCCAAGGTCAAACTCTGTCCAAGATCGGCCTCGAC
CTTAGGTCTTCCCCTTTCGCTCATGGTCAACTCTACGTTGCTCTCAGCCG
CTCACAGAATCGCACCTCCATCATGTGCCTTTTGCCTGACACCCACATTA
TCGACGGCATCCCCTACACGGACAACATAGTTTACCCTCCTCTCATTCAA
GCCGCCACGTTTGGTGATTACCATCCCGGTAACAGCATCTCAGGTAGCGT
CGGCGGAGACAAAGACACTCAATCATGTGATGGGGATGAAGAGTCTGTTG
ATGATGCCGACAAAGATGACACGGATTCTGTTGACGATTCCGACAACGAT
GACGCCAACGCAGACTCTCTGGGTTCTTGGACAGTCCTTGACGAGATTGG
TGACGGTGCTTGCATGCTGCGTTGCGTTTCACGATACATTTACGGCTCGC
CCATCACACACCGAGTATCTGAAACTTATGTCACACCCCACTGCATATTG
CACGAACCTTGAACTTCGCGCTGCCTCTCAATTGTACAACCGAGAGTTTC
GTATTACACTCATTGGCAATCCTTATCCCGCTCCACCGTCACCAACCACC
TGCGACCTACTGTACAACGGACACAATCACTACCAAACCTTGACTTATAA
CTGCCCCTCTTAATGCTTTCAACTGCGCATTCATACAAATTTCTCAGATT
AACGTTCCGGACG

protein sequence of EsuBft1136_5a-0001

>EsuBft1136_5 ID=EsuBft1136_5|Name=EsuBft1136_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=553bp
MIDAPAGTGKTFTEKCLASRLRGEDKVVLIVASTGIAALQLPGGWTAHSM
FKLPMDDNLTPSCVCNISSQTQRAELIRQSNLIIWDELPMTHRYCVEALD
RTLKDLMAVDQPFGGKTILFSGDWRQTGPIVKNAAPTDTVDAAFISSPLW
KGVMRFRLNKSQRDKEDPQYASFVRSIGEGSRPTVTMSDGSKLTPLNNHD
NEDTANHFQLRYTTDFDELLRFVYPDLSQQSRIWNTRAILATTNHSIDRS
NDTISDNRPGNYVSFFSSDSLISDEKNRRTAFASPEHLNQLNVQGIPPHE
LKLKTDTLALITRNLNFSEGLVNGQKCVVLAVSASSRVLQVQLLTEERPR
PIVLIPRINFQGKVGRNGICFTRKQFPLRTAYSMTINKSQGQTLSKIGLD
LRSSPFAHGQLYVALSRSQNRTSIMCLLPDTHIIDGIPYTDNIVYPPLIQ
AATFGDYHPGNSISGSVGGDKDTQSCDGDEESVDDADKDDTDSVDDSDND
DANADSLGSWTVLDEIGDGACMLRCVSRYIYGSPITHRVSETYVTPHCIL
HEP

mRNA from alignment at Scaffold_141:8452..10475-

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1136_5a-0001 ID=EsuBft1136_5a-0001|Name=EsuBft1136_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2024bp|location=Sequence derived from alignment at Scaffold_141:8452..10475- (Ectocarpus subulatus male Bft15b)
ATGATAGACGCTCCTGCAGGTACCGGTAAGACTTTCACAGAGAAATGTTT
GGCTTCAAGATTGAGGGGTGAAGATAAAGTGGTTTTAATCGTTGCATCGA
CGGGTATTGCCGCTTTGCAGCTGCCCGGAGGGTGGACAGCTCACAGCATG
TTCAAATTACCAATGGATGACAACCTAACGCCGTCATGTGTCTGTAACAT
CAGCAGTCAGACTCAAAGAGCAGAACTCATCCGTCAGTCCAACCTCATTA
TTTGGGATGAACTTCCCATGACTCACAGATACTGCGTTGAAGCTCTCGAC
AGAACTCTAAAAGACCTCATGGCCGTAGATCAACCCTTTGGAGGAAAGAC
CATTCTATTTAGCGGTGACTGGCGCCAAACAGGTCCAATTGTCAAAAACG
CTGCACCTACTGACACCGTCGACGCCGCATTTATCTCCAGCCCTCTCTGG
AAGGGTGTCATGCGTTTCAGACTCAACAAATCACAGCGAGACAAGGAAGA
CCCCCAGTATGCATCTTTTGTCAGGTCCATAGGAGAGGGTTCACGCCCAA
CAGTTACCATGTCCGATGGATCCAAGCTAACTCCACTAAACAACCACGAC
AACGAAGACACCGCCAACCATTTTCAGCTAAGGTACACGACCGACTTTGA
CGAACTGCTCCGCTTTGTGTACCCTGACCTCTCACAGCAGTCCCGTATAT
GGAACACTCGTGCTATCCTTGCAACCACTAACCACTCCATCGACCGTTCA
AACGACACGATTTCCGACAATCGCCCTGGCAACTATGTCTCTTTCTTCAG
TTCGGATTCTCTAATCTCGGACGAGAAAAACAGACGTACTGCTTTCGCGT
CTCCTGAGCACCTCAATCAGCTTAATGTCCAAGGCATACCGCCTCACGAA
CTCAAACTAAAAACTGACACCCTCGCTTTAATAACACGCAACCTCAACTT
CTCCGAGGGCCTCGTGAACGGCCAAAAGTGCGTCGTCCTCGCCGTCTCTG
CATCAAGTAGAGTGCTGCAAGTTCAACTTCTCACTGAAGAAAGACCCCGA
CCTATTGTTCTCATCCCGAGAATCAACTTCCAGGGTAAAGTAGGTCGCAA
TGGCATTTGCTTTACTCGAAAACAATTTCCTCTGAGAACCGCGTATTCAA
TGACCATTAACAAGAGCCAAGGTCAAACTCTGTCCAAGATCGGCCTCGAC
CTTAGGTCTTCCCCTTTCGCTCATGGTCAACTCTACGTTGCTCTCAGCCG
CTCACAGAATCGCACCTCCATCATGTGCCTTTTGCCTGACACCCACATTA
TCGACGGCATCCCCTACACGGACAACATAGTTTACCCTCCTCTCATTCAA
GCCGCCACGTTTGGTGATTACCATCCCGGTAACAGCATCTCAGGTAGCGT
CGGCGGAGACAAAGACACTCAATCATGTGATGGGGATGAAGAGTCTGTTG
ATGATGCCGACAAAGATGACACGGATTCTGTTGACGATTCCGACAACGAT
GACGCCAACGCAGACTCTCTGGGTTCTTGGACAGTCCTTGACGAGATTGG
TGACGGTGCTTGCATGCTGCGTTGCGTTTCACGATACATTTACGGCTCGC
CCATCACACACCGGTATGTTCGAACTCAAATATTGCACCACATCTCCTCC
AACCTGCATGTACAGTATCCCATGTTTGGAGGTCTCACCTTTTTCAACAT
CATTGATACTGGTGTCAACAGCGAATTAATTCAAATTGCTGGCCGCGCCG
AGCAACTCTACAGTAGCGTCCCAGAGTATCTGAAACTTATGTCACACCCC
ACTGCATATTGCACGAACCTTGAACTTCGCGCTGCCTCTCAATTGTACAA
CCGAGAGTTTCGTATTACACTCATTGGCAATCCTTATCCCGCTCCACCGT
CACCAACCACCTGCGACCTACTGTACAACGGACACAATCACTACCAAACC
TTGACTTATAACTGCCCCTCTTAATGCTTTCAACTGCGCATTCATACAAA
TTTCTCAGATTAACGTTCCGGACG

Coding sequence (CDS) from alignment at Scaffold_141:8452..10475-

>EsuBft1136_5a-0001 ID=EsuBft1136_5a-0001|Name=EsuBft1136_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1662bp|location=Sequence derived from alignment at Scaffold_141:8452..10475- (Ectocarpus subulatus male Bft15b)
ATGATAGACGCTCCTGCAGGTACCGGTAAGACTTTCACAGAGAAATGTTT
GGCTTCAAGATTGAGGGGTGAAGATAAAGTGGTTTTAATCGTTGCATCGA
CGGGTATTGCCGCTTTGCAGCTGCCCGGAGGGTGGACAGCTCACAGCATG
TTCAAATTACCAATGGATGACAACCTAACGCCGTCATGTGTCTGTAACAT
CAGCAGTCAGACTCAAAGAGCAGAACTCATCCGTCAGTCCAACCTCATTA
TTTGGGATGAACTTCCCATGACTCACAGATACTGCGTTGAAGCTCTCGAC
AGAACTCTAAAAGACCTCATGGCCGTAGATCAACCCTTTGGAGGAAAGAC
CATTCTATTTAGCGGTGACTGGCGCCAAACAGGTCCAATTGTCAAAAACG
CTGCACCTACTGACACCGTCGACGCCGCATTTATCTCCAGCCCTCTCTGG
AAGGGTGTCATGCGTTTCAGACTCAACAAATCACAGCGAGACAAGGAAGA
CCCCCAGTATGCATCTTTTGTCAGGTCCATAGGAGAGGGTTCACGCCCAA
CAGTTACCATGTCCGATGGATCCAAGCTAACTCCACTAAACAACCACGAC
AACGAAGACACCGCCAACCATTTTCAGCTAAGGTACACGACCGACTTTGA
CGAACTGCTCCGCTTTGTGTACCCTGACCTCTCACAGCAGTCCCGTATAT
GGAACACTCGTGCTATCCTTGCAACCACTAACCACTCCATCGACCGTTCA
AACGACACGATTTCCGACAATCGCCCTGGCAACTATGTCTCTTTCTTCAG
TTCGGATTCTCTAATCTCGGACGAGAAAAACAGACGTACTGCTTTCGCGT
CTCCTGAGCACCTCAATCAGCTTAATGTCCAAGGCATACCGCCTCACGAA
CTCAAACTAAAAACTGACACCCTCGCTTTAATAACACGCAACCTCAACTT
CTCCGAGGGCCTCGTGAACGGCCAAAAGTGCGTCGTCCTCGCCGTCTCTG
CATCAAGTAGAGTGCTGCAAGTTCAACTTCTCACTGAAGAAAGACCCCGA
CCTATTGTTCTCATCCCGAGAATCAACTTCCAGGGTAAAGTAGGTCGCAA
TGGCATTTGCTTTACTCGAAAACAATTTCCTCTGAGAACCGCGTATTCAA
TGACCATTAACAAGAGCCAAGGTCAAACTCTGTCCAAGATCGGCCTCGAC
CTTAGGTCTTCCCCTTTCGCTCATGGTCAACTCTACGTTGCTCTCAGCCG
CTCACAGAATCGCACCTCCATCATGTGCCTTTTGCCTGACACCCACATTA
TCGACGGCATCCCCTACACGGACAACATAGTTTACCCTCCTCTCATTCAA
GCCGCCACGTTTGGTGATTACCATCCCGGTAACAGCATCTCAGGTAGCGT
CGGCGGAGACAAAGACACTCAATCATGTGATGGGGATGAAGAGTCTGTTG
ATGATGCCGACAAAGATGACACGGATTCTGTTGACGATTCCGACAACGAT
GACGCCAACGCAGACTCTCTGGGTTCTTGGACAGTCCTTGACGAGATTGG
TGACGGTGCTTGCATGCTGCGTTGCGTTTCACGATACATTTACGGCTCGC
CCATCACACACCGAGTATCTGAAACTTATGTCACACCCCACTGCATATTG
CACGAACCTTGA