EsuBft1135_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1135_4a-0001
Unique Name	EsuBft1135_4a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_582	contig	Scaffold_582:382810..384203 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	7668.SPU_020204-tr
ProteomeId	EsuBft1135_4
Protein domains	IPR027124
Protein domains	IPR005135
Protein domains	PTHR23227
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Max annot lvl	33208\|Metazoa
Length	108
Hectar predicted targeting category	other localisation
Evalue	2.79e-08
EggNOG OGs	KOG1075@1\|root,KOG1075@2759\|Eukaryota,39TZY@33154\|Opisthokonta,3BHR3@33208\|Metazoa,3CUIP@33213\|Bilateria
Date last modified	2016-06-13
Date creation	2016-06-13
Description	Ribonuclease H protein
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1135_4a	EsuBft1135_4a	Ectocarpus subulatus male Bft15b	gene	Scaffold_582 382810..384203 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1135_4a-0001-exon	EsuBft1135_4a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_582 382810..383416 -
EsuBft1135_4a-0001-exon	agat-exon-12884	Ectocarpus subulatus male Bft15b	exon	Scaffold_582 383725..384203 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1135_4a-0001-cds	EsuBft1135_4a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_582 382810..383416 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1135_4a-0001	EsuBft1135_4	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_582 382810..384203 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_582:382810..384203-
coding sequence from alignment at Scaffold_582:382810..384203-

spliced messenger RNA

>EsuBft1135_4a-0001 ID=EsuBft1135_4a-0001|Name=EsuBft1135_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1086bp|location=Sequence derived from alignment at Scaffold_582:382810..384203- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGGTCATGCAGATTTTTTCCGTGACCGGCTGTGATGTCATAGGACT
TCAGGAGACCCGACGAGAGGGGCAAGGTTCAATTGCGCACGACGGATACG
TGATCATCTGGAGTGGCGCCCGTGCTGGCACCAAGGATAAGAGGGGCGTA
CACGGTGTGGGCATAGAGATCAAGAAGGCTATGTGGGAGAGTGTGGGCGA
GGAAGGTAGAACGGTGGAGTGCATTTGCCCGAGGCTGATGAACGTGCGCC
TACAAATTGGCCGCACCTGCGGAGAAGCTTTCGTGGTGGGGTACGCCCCC
ACGGAAACTCTCCGCACCACCGGGGGCGGTGATGTTAACGCCAAGGACTC
CTTCTGGACTGCTATCGACGCAGCGATCCGGGTGGTTCACAGCCGTGACC
ATCTCGTGGTGCTAATGGACGCCAACGCACGCACCGGTAGGAGGCGAGAC
GGGTGCTGCGATGCCAAAATTATGGGCGCCGGAAGCTGCCGGATCCGTAT
TGACCTCGAGCGGTTAACAAAGGACAAGCACCTAAGGGTCGCCTTCCACA
ACAGGGCCTCCAGCCGCCCTTTGCCCACGGCGCTCAGGCGGCCAACGGGA
GAGACCGCCGCCGAGCTGACGGCTACGGTGATGTCGGCCGCTGCTGAGAC
CGCGCCGCTGGCGAGGAGCGCACGAGGGCAGAGAGGCTGGTACAGGAGCG
AAGCGCAGCACGAGATCTCCGAAGCGTCTAAAAGCGATCAAGGCGGCCCA
GCAGCGACTGCGTGGGGCCTCAAAGACCAGCGCCTTCGAGCCGACCTGAA
GGCGATGCTCAAGGCGGCGCGGAAGCAGCGCAGCATCGCGGGGTGGACAG
CACCGGAAACGTTTTTCGAGGGCTATGTACGGCAGTTCGAGAAGAAGAGC
CGCGAGGGGGATCAGGCGGGTTTCTACAGGCACCTGAAGATGATCGACGT
CGAAGGTAAGAGGTCGTTCACCTCTCAGAACATCAAGGACGAGGACGGCA
AGGTCCTTCGGGACCCCACGTTTATTCGCCAACGGTGGGCACGGTGGTTC
CACAAGCTTCTCAACACCAAGTCGCCGACCATNNNN

protein sequence of EsuBft1135_4a-0001

>EsuBft1135_4 ID=EsuBft1135_4|Name=EsuBft1135_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=362bp
MTVMQIFSVTGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGV
HGVGIEIKKAMWESVGEEGRTVECICPRLMNVRLQIGRTCGEAFVVGYAP
TETLRTTGGGDVNAKDSFWTAIDAAIRVVHSRDHLVVLMDANARTGRRRD
GCCDAKIMGAGSCRIRIDLERLTKDKHLRVAFHNRASSRPLPTALRRPTG
ETAAELTATVMSAAAETAPLARSARGQRGWYRSEAQHEISEASKSDQGGP
AATAWGLKDQRLRADLKAMLKAARKQRSIAGWTAPETFFEGYVRQFEKKS
REGDQAGFYRHLKMIDVEGKRSFTSQNIKDEDGKVLRDPTFIRQRWARWF
HKLLNTKSPTXX

mRNA from alignment at Scaffold_582:382810..384203-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1135_4a-0001 ID=EsuBft1135_4a-0001|Name=EsuBft1135_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1394bp|location=Sequence derived from alignment at Scaffold_582:382810..384203- (Ectocarpus subulatus male Bft15b)
ATGACGGTCATGCAGATTTTTTCCGTGACCGGCTGTGATGTCATAGGACT
TCAGGAGACCCGACGAGAGGGGCAAGGTTCAATTGCGCACGACGGATACG
TGATCATCTGGAGTGGCGCCCGTGCTGGCACCAAGGATAAGAGGGGCGTA
CACGGTGTGGGCATAGAGATCAAGAAGGCTATGTGGGAGAGTGTGGGCGA
GGAAGGTAGAACGGTGGAGTGCATTTGCCCGAGGCTGATGAACGTGCGCC
TACAAATTGGCCGCACCTGCGGAGAAGCTTTCGTGGTGGGGTACGCCCCC
ACGGAAACTCTCCGCACCACCGGGGGCGGTGATGTTAACGCCAAGGACTC
CTTCTGGACTGCTATCGACGCAGCGATCCGGGTGGTTCACAGCCGTGACC
ATCTCGTGGTGCTAATGGACGCCAACGCACGCACCGGTAGGAGGCGAGAC
GGGTGCTGCGATGCCAAAATTATGGGCGCGTACGGACGCGACATTATGAA
CACCAACGGGGAACGGCTCCTTGGACTGGCATCAGACAACCAACTCTCCC
TGACCAACACCTACTTCCGGACACCGAAAGTTGGAGTGCGGCACACATTC
CAGAGCTCCAACAAGGGAAGGAGAAGTACCGCCTCGACTTCATCCTCATG
CGTCAGACGGACCGGCGTTTCGTGCGTAGTGTCTCCGTCAAATGACCCGA
CTTCAAGGACTCTGACCACAACCTCGTGCTTAAGACTGTCCGCCTCCCCC
CCCGTGTCGCAACCAGCCGACGAGTGCGGGGGAACAGCGGAAGCTGCCGG
ATCCGTATTGACCTCGAGCGGTTAACAAAGGACAAGCACCTAAGGGTCGC
CTTCCACAACAGGGCCTCCAGCCGCCCTTTGCCCACGGCGCTCAGGCGGC
CAACGGGAGAGACCGCCGCCGAGCTGACGGCTACGGTGATGTCGGCCGCT
GCTGAGACCGCGCCGCTGGCGAGGAGCGCACGAGGGCAGAGAGGCTGGTA
CAGGAGCGAAGCGCAGCACGAGATCTCCGAAGCGTCTAAAAGCGATCAAG
GCGGCCCAGCAGCGACTGCGTGGGGCCTCAAAGACCAGCGCCTTCGAGCC
GACCTGAAGGCGATGCTCAAGGCGGCGCGGAAGCAGCGCAGCATCGCGGG
GTGGACAGCACCGGAAACGTTTTTCGAGGGCTATGTACGGCAGTTCGAGA
AGAAGAGCCGCGAGGGGGATCAGGCGGGTTTCTACAGGCACCTGAAGATG
ATCGACGTCGAAGGTAAGAGGTCGTTCACCTCTCAGAACATCAAGGACGA
GGACGGCAAGGTCCTTCGGGACCCCACGTTTATTCGCCAACGGTGGGCAC
GGTGGTTCCACAAGCTTCTCAACACCAAGTCGCCGACCATNNNN

Coding sequence (CDS) from alignment at Scaffold_582:382810..384203-

>EsuBft1135_4a-0001 ID=EsuBft1135_4a-0001|Name=EsuBft1135_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1086bp|location=Sequence derived from alignment at Scaffold_582:382810..384203- (Ectocarpus subulatus male Bft15b)
ATGACGGTCATGCAGATTTTTTCCGTGACCGGCTGTGATGTCATAGGACT
TCAGGAGACCCGACGAGAGGGGCAAGGTTCAATTGCGCACGACGGATACG
TGATCATCTGGAGTGGCGCCCGTGCTGGCACCAAGGATAAGAGGGGCGTA
CACGGTGTGGGCATAGAGATCAAGAAGGCTATGTGGGAGAGTGTGGGCGA
GGAAGGTAGAACGGTGGAGTGCATTTGCCCGAGGCTGATGAACGTGCGCC
TACAAATTGGCCGCACCTGCGGAGAAGCTTTCGTGGTGGGGTACGCCCCC
ACGGAAACTCTCCGCACCACCGGGGGCGGTGATGTTAACGCCAAGGACTC
CTTCTGGACTGCTATCGACGCAGCGATCCGGGTGGTTCACAGCCGTGACC
ATCTCGTGGTGCTAATGGACGCCAACGCACGCACCGGTAGGAGGCGAGAC
GGGTGCTGCGATGCCAAAATTATGGGCGCCGGAAGCTGCCGGATCCGTAT
TGACCTCGAGCGGTTAACAAAGGACAAGCACCTAAGGGTCGCCTTCCACA
ACAGGGCCTCCAGCCGCCCTTTGCCCACGGCGCTCAGGCGGCCAACGGGA
GAGACCGCCGCCGAGCTGACGGCTACGGTGATGTCGGCCGCTGCTGAGAC
CGCGCCGCTGGCGAGGAGCGCACGAGGGCAGAGAGGCTGGTACAGGAGCG
AAGCGCAGCACGAGATCTCCGAAGCGTCTAAAAGCGATCAAGGCGGCCCA
GCAGCGACTGCGTGGGGCCTCAAAGACCAGCGCCTTCGAGCCGACCTGAA
GGCGATGCTCAAGGCGGCGCGGAAGCAGCGCAGCATCGCGGGGTGGACAG
CACCGGAAACGTTTTTCGAGGGCTATGTACGGCAGTTCGAGAAGAAGAGC
CGCGAGGGGGATCAGGCGGGTTTCTACAGGCACCTGAAGATGATCGACGT
CGAAGGTAAGAGGTCGTTCACCTCTCAGAACATCAAGGACGAGGACGGCA
AGGTCCTTCGGGACCCCACGTTTATTCGCCAACGGTGGGCACGGTGGTTC
CACAAGCTTCTCAACACCAAGTCGCCGACCATNNNN