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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
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| Seed ortholog | 946362.XP_004988912.1 |
| ProteomeId | EsuBft1135_3 |
| Protein domains | SSF56672 |
| Protein domains | PTHR10178 |
| Protein domains | G3DSA |
| Protein domains | IPR000477 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | retrovirus-related pol polyprotein from transposon 297 os:drosophila melanogaster gn:pol pe:3 s [Automatic annotation] |
| Nb exon | 3 |
| Max annot lvl | 33154|Opisthokonta |
| Length | 942 |
| Hectar predicted targeting category | other localisation |
| Evalue | 9.11e-51 |
| EggNOG OGs | COG2801@1|root,KOG0017@2759|Eukaryota,39ZVA@33154|Opisthokonta |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
| Description | dUTP metabolic process |
| COG category | L |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1135_3a-0001 ID=EsuBft1135_3a-0001|Name=EsuBft1135_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=942bp|location=Sequence derived from alignment at Scaffold_582:375669..377043- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGGTCCTGGTTGGACGCCGGTCTGAGCCAGTTACATCTCGCCCGTACCG
AGTTAGCCCTCCAGTTGCGAAACAGGTGGACGCTATTCTCGACCAATACC
TTACCGCGGATCTTATACAACACTCGACGTCTCCATACTCGAGTCCTTTG
GTTGTCATACCCAAGAAATCTGGTGGTGTTCGCATTACCGTGAATTATCG
CAAGTTGAATAAGCTATGTGCTCTTAGTCAGCTCCCGATCCTTCGAGTTG
ATGAAACTCTGGACAAACTGTTGAAGGGAAATATCTATTCTCTCTTTGAC
ATAAAATCTTCGTTCCATCAAATCACGGTTCATCGTGATACCATCCCTCT
CACGGCGTTTGTTACGTCTTCTGGGCTATTTGAGTGGTTAAAAATGCCGC
AGGGCAGTGCTGCTGCCCCTGGATGGTTTTTCAAGGTCGTCAACGAAGTC
ATCAAAAATCTTCGAGGTGTTGCGTCGTATTTGGCCGATCTCATCGTTTT
TGATGCGACCCCAGCCGCTCATGTAGCGACCATTCGCTCTCTTTTTGAAA
GGTTGCGTACACACAGTTTGAAACTGACCCCTCCGAAAGCTACAATTGGC
GCCACAGAAGCCGAGTTTCTTGGGCACACTATTTCTCCGGACGGTGTTCG
GCCAAATGGTGACAAAGTTATTGCGCTCACCAAGATGCCGATGCCCAAAG
ACACCAAGCAGCTTCGAGAAGCCGAGTTTCTTGGGCACACTATTTCTCCG
GACGGTGTTCGGCCAAATGGTGACAAAGTTATTGCGCTCACCAAGATGCC
GATGCCCAAAGACACCAAGCAGCTTCGAGGTTTGCTGGGTGATCTCGGCT
ATTACCGGAAATTTCTCCCACAGATGGCTAAGCGTGTTCGCCCCCTTACG
ACTCTTCTGAAGAAGAATGTGAAGTTTGAGTTTGCGGATTGA back to topprotein sequence of EsuBft1135_3a-0001 >EsuBft1135_3 ID=EsuBft1135_3|Name=EsuBft1135_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=313bp
MVLVGRRSEPVTSRPYRVSPPVAKQVDAILDQYLTADLIQHSTSPYSSPL
VVIPKKSGGVRITVNYRKLNKLCALSQLPILRVDETLDKLLKGNIYSLFD
IKSSFHQITVHRDTIPLTAFVTSSGLFEWLKMPQGSAAAPGWFFKVVNEV
IKNLRGVASYLADLIVFDATPAAHVATIRSLFERLRTHSLKLTPPKATIG
ATEAEFLGHTISPDGVRPNGDKVIALTKMPMPKDTKQLREAEFLGHTISP
DGVRPNGDKVIALTKMPMPKDTKQLRGLLGDLGYYRKFLPQMAKRVRPLT
TLLKKNVKFEFAD back to topmRNA from alignment at Scaffold_582:375669..377043- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1135_3a-0001 ID=EsuBft1135_3a-0001|Name=EsuBft1135_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1375bp|location=Sequence derived from alignment at Scaffold_582:375669..377043- (Ectocarpus subulatus male Bft15b)
ATGGTCCTGGTTGGACGCCGGTCGTAATTACGGAGTTGGGTAATGTTCTG
TGTGAATACCATGACGTGTTTTCCAGTTCGCCCACGGATTTCGGTTCTTG
TTCATTGTTTCCGTTCAAATTGACCGTTCCCCTGGCAGTGAGCCAGTTAC
ATCTCGCCCGTACCGAGTTAGCCCTCCAGTTGCGAAACAGGTGGACGCTA
TTCTCGACCAATACCTTACCGCGGATCTTATACAACACTCGACGTCTCCA
TACTCGAGTCCTTTGGTTGTCATACCNTTTCCGTTCAAATTGACCGTTCC
CCTGGCAGTGAGCCAGTTACATCTCGCCCGTACCGAGTTAGCCCTCCAGT
TGCGAAACAGGTGGACGCTATTCTCGACCAATACCTTACCGCGGATCTTA
TACAACACTCGACGTCTCCATACTCGAGTCCTTTGGTTGTCATACCCAAG
AAATCTGGTGGTGTTCGCATTACCGTGAATTATCGCAAGTTGAATAAGCT
ATGTGCTCTTAGTCAGCTCCCGATCCTTCGAGTTGATGAAACTCTGGACA
AACTGTTGAAGGGAAATATCTATTCTCTCTTTGACATAAAATCTTCGTTC
CATCAAATCACGGTTCATCGTGATACCATCCCTCTCACGGCGTTTGTTAC
GTCTTCTGGGCTATTTGAGTGGTTAAAAATGCCGCAGGGCAGTGCTGCTG
CCCCTGGATGGTTTTTCAAGGTCGTCAACGAAGTCATCAAAAATCTTCGA
GGTGTTGCGTCGTATTTGGCCGATCTCATCGTTTTTGATGCGACCCCAGC
CGCTCATGTAGCGACCATTCGCTCTCTTTTTGAAAGGTTGCGTACACACA
GTTTGAAACTGACCCCTCCGAAAGCTACAATTGGCGCCACAGAAGCCGAG
TTTCTTGGGCACACTATTTCTCCGGACGGTGTTCGGCCAAATGGTGACAA
AGTTATTGCGCTCACCAAGATGCCGATGCCCAAAGACACCAAGCAGCTTC
GAGGTTTGCTGGGTGATCTCGGCTATTACCGGAAATTTCTCCCACAGATG
GCTAAGCGTGTTCGCCCCCTTACGACTCTTCTGAAGANTTGAAAGGTTGC
GTACACACAGTTTGAAACTGACCCCTCCGAAAGCTACAATTGGCGCCACA
GAAGCCGAGTTTCTTGGGCACACTATTTCTCCGGACGGTGTTCGGCCAAA
TGGTGACAAAGTTATTGCGCTCACCAAGATGCCGATGCCCAAAGACACCA
AGCAGCTTCGAGGTTTGCTGGGTGATCTCGGCTATTACCGGAAATTTCTC
CCACAGATGGCTAAGCGTGTTCGCCCCCTTACGACTCTTCTGAAGAAGAA
TGTGAAGTTTGAGTTTGCGGATTGA back to topCoding sequence (CDS) from alignment at Scaffold_582:375669..377043- >EsuBft1135_3a-0001 ID=EsuBft1135_3a-0001|Name=EsuBft1135_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=942bp|location=Sequence derived from alignment at Scaffold_582:375669..377043- (Ectocarpus subulatus male Bft15b)
ATGGTCCTGGTTGGACGCCGGTCTGAGCCAGTTACATCTCGCCCGTACCG
AGTTAGCCCTCCAGTTGCGAAACAGGTGGACGCTATTCTCGACCAATACC
TTACCGCGGATCTTATACAACACTCGACGTCTCCATACTCGAGTCCTTTG
GTTGTCATACCCAAGAAATCTGGTGGTGTTCGCATTACCGTGAATTATCG
CAAGTTGAATAAGCTATGTGCTCTTAGTCAGCTCCCGATCCTTCGAGTTG
ATGAAACTCTGGACAAACTGTTGAAGGGAAATATCTATTCTCTCTTTGAC
ATAAAATCTTCGTTCCATCAAATCACGGTTCATCGTGATACCATCCCTCT
CACGGCGTTTGTTACGTCTTCTGGGCTATTTGAGTGGTTAAAAATGCCGC
AGGGCAGTGCTGCTGCCCCTGGATGGTTTTTCAAGGTCGTCAACGAAGTC
ATCAAAAATCTTCGAGGTGTTGCGTCGTATTTGGCCGATCTCATCGTTTT
TGATGCGACCCCAGCCGCTCATGTAGCGACCATTCGCTCTCTTTTTGAAA
GGTTGCGTACACACAGTTTGAAACTGACCCCTCCGAAAGCTACAATTGGC
GCCACAGAAGCCGAGTTTCTTGGGCACACTATTTCTCCGGACGGTGTTCG
GCCAAATGGTGACAAAGTTATTGCGCTCACCAAGATGCCGATGCCCAAAG
ACACCAAGCAGCTTCGAGAAGCCGAGTTTCTTGGGCACACTATTTCTCCG
GACGGTGTTCGGCCAAATGGTGACAAAGTTATTGCGCTCACCAAGATGCC
GATGCCCAAAGACACCAAGCAGCTTCGAGGTTTGCTGGGTGATCTCGGCT
ATTACCGGAAATTTCTCCCACAGATGGCTAAGCGTGTTCGCCCCCTTACG
ACTCTTCTGAAGAAGAATGTGAAGTTTGAGTTTGCGGATTGA back to top
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