EsuBft1134_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1134_4a-0001
Unique NameEsuBft1134_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_259contigScaffold_259:444637..446978 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LGF6
ProteomeIdEsuBft1134_4
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSignalP-noTM
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_H_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon6
Max annot lvl2759|Eukaryota
Length92
Hectar predicted targeting categorysignal peptide
Evalue3.84e-152
EggNOG OGs28IPK@1|root,2QR0N@2759|Eukaryota
Ec32 ortholog descriptionNuclear fusion protein, KAR5
Ec32 orthologEc-16_003860.1
Date last modified2016-06-14
Date creation2016-06-14
KEGG koko:K18171,ko:K18626
GOsGO:0000003,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0007275,GO:0008150,GO:0009553,GO:0009555,GO:0009790,GO:0009791,GO:0009793,GO:0010154,GO:0016020,GO:0016021,GO:0022414,GO:0031224,GO:0031226,GO:0032501,GO:0032502,GO:0042802,GO:0044425,GO:0044459,GO:0044464,GO:0048229,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0061458,GO:0071944
BRITEko00000,ko03029,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1134_4aEsuBft1134_4aEctocarpus subulatus male Bft15bgeneScaffold_259 444637..446978 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1134_4a-0001EsuBft1134_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_259 444637..446978 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1134_4a-0001-exonagat-exon-21769Ectocarpus subulatus male Bft15bexonScaffold_259 444637..444644 +
EsuBft1134_4a-0001-exonEsuBft1134_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_259 444736..444895 +
EsuBft1134_4a-0001-exonagat-exon-21771Ectocarpus subulatus male Bft15bexonScaffold_259 445218..445286 +
EsuBft1134_4a-0001-exonagat-exon-21772Ectocarpus subulatus male Bft15bexonScaffold_259 445774..445791 +
EsuBft1134_4a-0001-exonagat-exon-21770Ectocarpus subulatus male Bft15bexonScaffold_259 445849..446400 +
EsuBft1134_4a-0001-exonagat-exon-21768Ectocarpus subulatus male Bft15bexonScaffold_259 446862..446978 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1134_4a-0001-cdsEsuBft1134_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_259 444637..444644 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1134_4a-0001 ID=EsuBft1134_4a-0001|Name=EsuBft1134_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=924bp|location=Sequence derived from alignment at Scaffold_259:444637..446978+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCAAGTACCTTATCCTCGCGGCGAACCTTTGCTGGGTGCTGACCAC
CGCCCCCCCGCTCCGCTCGGCAAGGACGGCCCTCTTCGCGCTCGTCGCTT
TCGGCCTCCTGCTCGAGAAGAGCCTGTGCGGCGGTGATGACCGCGGTGGC
TTGGATGGACTTGAAAGGGTCGACTGGCTGTTGTCCGGGCTCAGATGGGC
GTCGCCCGGGACGTTCGCCGCAGCAACGTGGGCGAAGGTGGCTAACAGAT
TAAAGGTTTTCACTCAGGAGAAAATCCGGTGGCTAACGTTTCAGGCTGGC
GCTGTCATTCTCGGCCACGCCCTTACATCGTACTACCTCCCCTCCCTGGA
ACTGGGGCGGCTTGCCAGTTCGCTATTGGCAGCGTGGATGAAAAGTCGCA
ATGGCGACAACAGCAGAAACGACGATCATCGAGGTACGTCGCGATCAAGA
GAAGGGCATGGTTCTGCTACCGATGACAGACGCACGGATGGACTACAGCT
GCTTCGTCCGCTGACGGTCGGCCGCGGTAGCGGCGACCGCGACAACGGTA
CGGTCGCAAGAACGGGCCACGGCCGTTCAAGGAACCACGCCGGAGAGTCC
TTCCAACACGACGGCAACCAGGACGACAGCATCAACGATGATGGATCGGT
TCAGGACGACATTGATAACTCGGGGGGACTCGGTGCGAGACAACCGGTCA
CGCCTGGACCGGGAAGAGCTGCAAACGGCAGTGGTAATGGTGGAAGTCGC
AGGGCTTCGGGTCAGGGGAACGCGAGGGCCGATGGGCTTGATGGTCTCAA
GCGACAGGAGCTCCAATCACTCGCCAAAAAAACCGACGGCGTGGTCAGGG
CCAACCTGTCAACGCTTAACATCATCAGGGGACTGCGGGAACTCGGCATC
ACAGAAGATGCGCTTGATCACTAG
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protein sequence of EsuBft1134_4a-0001

>EsuBft1134_4 ID=EsuBft1134_4|Name=EsuBft1134_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=307bp
MVKYLILAANLCWVLTTAPPLRSARTALFALVAFGLLLEKSLCGGDDRGG
LDGLERVDWLLSGLRWASPGTFAAATWAKVANRLKVFTQEKIRWLTFQAG
AVILGHALTSYYLPSLELGRLASSLLAAWMKSRNGDNSRNDDHRGTSRSR
EGHGSATDDRRTDGLQLLRPLTVGRGSGDRDNGTVARTGHGRSRNHAGES
FQHDGNQDDSINDDGSVQDDIDNSGGLGARQPVTPGPGRAANGSGNGGSR
RASGQGNARADGLDGLKRQELQSLAKKTDGVVRANLSTLNIIRGLRELGI
TEDALDH
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mRNA from alignment at Scaffold_259:444637..446978+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1134_4a-0001 ID=EsuBft1134_4a-0001|Name=EsuBft1134_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2342bp|location=Sequence derived from alignment at Scaffold_259:444637..446978+ (Ectocarpus subulatus male Bft15b)
ATGGTCAAGTTCTTAGATGTTGTTTTGCTTGGTTCTTGACTACTCTAAGG
TAGGTTCCTAAGTGGTGGCGCGTTCCGAAACGCTTGCTCTTGCCCCCAGG
TACCTTATCCTCGCGGCGAACCTTTGCTGGGTGCTGACCACCGCCCCCCC
GCTCCGCTCGGCAAGGACGGCCCTCTTCGCGCTCGTCGCTTTCGGCCTCC
TGCTCGAGAAGAGCCTGTGCGGCGGTGATGACCGCGGTGGCTTGGATGGA
CTTGAAAGGGTACACGTTGTTACACCCAGATGATGCCCCCAGTTAGTTAT
CTCTGGGTGTTGTCTCCAGAATGCCTCGGCGCGGAACGTTTTGGTGTTTC
AGAACCAACAAGGATTTCGAATGTCGTAAATATATGAGGAGTGAACCGGC
AAGAGACGGCGACTTTCCCTGTCCTGGGTGTCGAAAGCTTGACGCGGAGA
TGTCCGTCCTCTAGGCATGGGGGAAGTTTTTCGGAGCGTGCCGGCATGCG
TTCGTTCGATAGAGTGTACTTCAAAATGCTATCTTTGTGCAACTACCCGT
GGATGCCCGAACGCAAACCGATAACTTGTAGGTCGACTGGCTGTTGTCCG
GGCTCAGATGGGCGTCGCCCGGGACGTTCGCCGCAGCAACGTGGGCGAAG
GTGAAAGATGGGGGATGATCCTGCATGAACTCCAGTACCGGGCTTGTTGT
GGGAAACGACTTGGACCTGTTTGTTTCCGTGACCGAAATGAAGAGATAAA
CGCGCGCGAGAGTACTCCAGAGTGCATAATGGCCAATACTCCGTCTAAAG
CGACGGGGAGGAAACATTGGAATAAGCTCGAAGTGATTTGAATAGCAACA
AGATCGGTTCTCAAGTCCATTGTCACACCTTGGTGGCTCCTTGTGCGGCT
GGTCGTAGTGAAGGCAACGATCATCCACATATTATTGTCTCATATTTTAC
TTGAGTAGTTTGAAAGTCGACGAAAAATCGGAGATCTAATGGTGTGGTTT
GGCGTTTTCAGGAAACAGAGCAGTCGCCTCGATTCCTTAGAGCGTATTCC
ATACCTGAGTACAAGAACCGGTGGCCTTTGCCTTAAAAACGAGACACACA
AGCGGCCGCAGCCCTGAAGCCTACCCCTGAGCTGCAGGTGGCTAACAGAT
TAAAGGTAGGTACCACCCGTCGCCCGTCGCCGGTCGCCCCCTCCCATTTT
GGTGCCGGTCAGGTTTTCACTCAGGAGAAAATCCGGTGGCTAACGTTTCA
GGCTGGCGCTGTCATTCTCGGCCACGCCCTTACATCGTACTACCTCCCCT
CCCTGGAACTGGGGCGGCTTGCCAGTTCGCTATTGGCAGCGTGGATGAAA
AGTCGCAATGGCGACAACAGCAGAAACGACGATCATCGAGGTACGTCGCG
ATCAAGAGAAGGGCATGGTTCTGCTACCGATGACAGACGCACGGATGGAC
TACAGCTGCTTCGTCCGCTGACGGTCGGCCGCGGTAGCGGCGACCGCGAC
AACGGTACGGTCGCAAGAACGGGCCACGGCCGTTCAAGGAACCACGCCGG
AGAGTCCTTCCAACACGACGGCAACCAGGACGACAGCATCAACGATGATG
GATCGGTTCAGGACGACATTGATAACTCGGGGGGACTCGGTGCGAGACAA
CCGGTCACGCCTGGACCGGGAAGAGCTGCAAACGGCAGTGGTAATGGTGG
AAGTCGCAGGGCTTCGGGTCAGGGGAACGCGAGGGCCGATGGGCTTGATG
GTCTCAAGCGACAGGTATTGCTTGCTTCTTTGCTGCATAAAATGACTGTG
TGCCTGCGCAGGGAGACCTCCTTGACGCTGTTTATTCATGGTCGAATTGT
AGATACAGAACTACAGGAGTGAGGGCGTCTCGACAGCCCCAACGTTTCCG
GGACCTTGGTCGGTTTCGCCAATCACTCTCATTTGTCAATGGTATTCCCC
CTCGGCTCCAACCACAAAGTCATGGTTTTTGTCGAGGAATTGACAATCAT
TAATGTTGGGCGCTTGTTGCCGAAGCCGCCACCACGATGAGGTATGGTAG
TGAACACGGTATACGCGAGCGCTAGCAGGAGTACTCTTCTCCACAATGAA
ACTGCAAAGTTAAGAGCAAGAGATCGTTGAAAGTGGCATTGTCGGCATGA
TGCTTGTTTCCCCCTCCGCCATTCTTGTCTTTCATGACTTGTGGACTTGT
GGTCGTCGTGCTCATTCCTCGGCAGGAGCTCCAATCACTCGCCAAAAAAA
CCGACGGCGTGGTCAGGGCCAACCTGTCAACGCTTAACATCATCAGGGGA
CTGCGGGAACTCGGCATCACAGAAGATGCGCTTGATCACTAG
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Coding sequence (CDS) from alignment at Scaffold_259:444637..446978+

>EsuBft1134_4a-0001 ID=EsuBft1134_4a-0001|Name=EsuBft1134_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=924bp|location=Sequence derived from alignment at Scaffold_259:444637..446978+ (Ectocarpus subulatus male Bft15b)
ATGGTCAAGTACCTTATCCTCGCGGCGAACCTTTGCTGGGTGCTGACCAC
CGCCCCCCCGCTCCGCTCGGCAAGGACGGCCCTCTTCGCGCTCGTCGCTT
TCGGCCTCCTGCTCGAGAAGAGCCTGTGCGGCGGTGATGACCGCGGTGGC
TTGGATGGACTTGAAAGGGTCGACTGGCTGTTGTCCGGGCTCAGATGGGC
GTCGCCCGGGACGTTCGCCGCAGCAACGTGGGCGAAGGTGGCTAACAGAT
TAAAGGTTTTCACTCAGGAGAAAATCCGGTGGCTAACGTTTCAGGCTGGC
GCTGTCATTCTCGGCCACGCCCTTACATCGTACTACCTCCCCTCCCTGGA
ACTGGGGCGGCTTGCCAGTTCGCTATTGGCAGCGTGGATGAAAAGTCGCA
ATGGCGACAACAGCAGAAACGACGATCATCGAGGTACGTCGCGATCAAGA
GAAGGGCATGGTTCTGCTACCGATGACAGACGCACGGATGGACTACAGCT
GCTTCGTCCGCTGACGGTCGGCCGCGGTAGCGGCGACCGCGACAACGGTA
CGGTCGCAAGAACGGGCCACGGCCGTTCAAGGAACCACGCCGGAGAGTCC
TTCCAACACGACGGCAACCAGGACGACAGCATCAACGATGATGGATCGGT
TCAGGACGACATTGATAACTCGGGGGGACTCGGTGCGAGACAACCGGTCA
CGCCTGGACCGGGAAGAGCTGCAAACGGCAGTGGTAATGGTGGAAGTCGC
AGGGCTTCGGGTCAGGGGAACGCGAGGGCCGATGGGCTTGATGGTCTCAA
GCGACAGGAGCTCCAATCACTCGCCAAAAAAACCGACGGCGTGGTCAGGG
CCAACCTGTCAACGCTTAACATCATCAGGGGACTGCGGGAACTCGGCATC
ACAGAAGATGCGCTTGATCACTAG
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