EsuBft1134_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1134_2a-0001
Unique NameEsuBft1134_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_259contigScaffold_259:437854..439559 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1134_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length89
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1134_2aEsuBft1134_2aEctocarpus subulatus male Bft15bgeneScaffold_259 437854..439559 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1134_2a-0001EsuBft1134_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_259 438017..438435 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1134_2a-0001-exonagat-exon-21762Ectocarpus subulatus male Bft15bexonScaffold_259 437854..438063 +
EsuBft1134_2a-0001-exonEsuBft1134_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_259 438342..438554 +
EsuBft1134_2a-0001-exonagat-exon-21763Ectocarpus subulatus male Bft15bexonScaffold_259 438636..438764 +
EsuBft1134_2a-0001-exonagat-exon-21764Ectocarpus subulatus male Bft15bexonScaffold_259 438986..439286 +
EsuBft1134_2a-0001-exonagat-exon-21765Ectocarpus subulatus male Bft15bexonScaffold_259 439514..439559 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1134_2a-0001-exonagat-five_prime_utr-813Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_259 437854..438016 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1134_2a-0001-cdsEsuBft1134_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_259 438017..438063 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1134_2a-0001-exonagat-three_prime_utr-1273Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_259 438436..438554 +
EsuBft1134_2a-0001-exonagat-three_prime_utr-1274Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_259 438636..438764 +
EsuBft1134_2a-0001-exonagat-three_prime_utr-1275Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_259 438986..439286 +
EsuBft1134_2a-0001-exonagat-three_prime_utr-1276Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_259 439514..439559 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1134_2a-0001 ID=EsuBft1134_2a-0001|Name=EsuBft1134_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=899bp|location=Sequence derived from alignment at Scaffold_259:437854..439559+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTGGGTTGGCGCTGTTGGCAAAGCGCTGTAAAACACGCCACCCCAAATAT
AGCCCCCATAGTATGCGCTACCAAAGACGAGTGACGCATGGATGCGTGGA
GTGAGGATTGCTTCCCGAAACCTCACAGGTTGAGTGATGTAGGAGATTGC
CGGACACATAGACATGTTGAGTGATTATAGCTGTATACTGAAACCCCACG
GAAAGGGGAGGTTTGAGATTGCCAGACACATGGACGGGTTGAGTGGGGAT
AGCTGCATCCTGAAACCCCACTGGTTGAGTGATGTTGGAGTACCGGACAC
ATAGACGCGTTGAGTGAGGATAGACACATATTGAAACCTCACAGGCGATT
GTGGTGGAGATTGCGAGACACCTAGACGTGTTGAGTGAGCATAGCTGCAT
ACTGAAACCTCACAGGTGCATTGTTTGCCAGACACATAGACGCGTTGAGT
GGGGATAGCTACATACTGAAACCTCACGAGTTGAGTGATGTTGGATAGTG
CCGGACACATAGACGCTTTGAGTGAGGAAAGACACATACTGGAACCTCAC
AGGTTGATTTGTATTGAGATTGCCGGACACCCAGACGCGTTGAGTGAAGA
TACCTGCATCCTGACACCTCAAAGATGGATTGGTTGTTGAGTTTGCCAGA
CACAGTCTAGACGCGCTGCGTGGGGATAGCTACATACTGAAACCTCACGA
GTTGAGTGATGTTGGATAGTGCCGGACACATAGACGCTTTGAGTGAGGAA
AGACACATACTGAAACCTCACAGGTGATTTGTATTGGAGATTGCCGGACA
CATAGACGTGTTGAGTGAGGATAGCTGCATACTGAAACCTCACAGATGGA
TTGTTTGCCAGACACATAGACGCGTTGAGTGGGGATAGCTACATACTGA
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protein sequence of EsuBft1134_2a-0001

>EsuBft1134_2 ID=EsuBft1134_2|Name=EsuBft1134_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=46bp
MLSDYSCILKPHGKGRFEIARHMDGLSGDSCILKPHWLSDVGVPDT
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mRNA from alignment at Scaffold_259:437854..439559+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1134_2a-0001 ID=EsuBft1134_2a-0001|Name=EsuBft1134_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1706bp|location=Sequence derived from alignment at Scaffold_259:437854..439559+ (Ectocarpus subulatus male Bft15b)
GTGGGTTGGCGCTGTTGGCAAAGCGCTGTAAAACACGCCACCCCAAATAT
AGCCCCCATAGTATGCGCTACCAAAGACGAGTGACGCATGGATGCGTGGA
GTGAGGATTGCTTCCCGAAACCTCACAGGTTGAGTGATGTAGGAGATTGC
CGGACACATAGACATGTTGAGTGATTATAGCTGTATACTGAAACCCCACG
GAAAGGGGAGGTTTGAGATTGCCAGACACATAGACGGGTTGCGTGGGGAT
AGCTGCTGGAACCCCACGGGTTGAGTGATGTTGGAGTGCCGGACACATAN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGAGTG
AGGATAGCTGCATACTGAAACCCCAAGGGTAGAGTGAGGTTTGAGATTGC
CAGACACATGGACGGGTTGAGTGGGGATAGCTGCATCCTGAAACCCCACT
GGTTGAGTGATGTTGGAGTACCGGACACATAGACGCGTTGAGTGAGGATA
GACACATATTGAAACCTCACAGGCGATTGTGGTGGAGATTGCGAGACACC
TAGACGTGTTGAGTGAGCATAGCTGCATACTGAAACCTCACAGGTGCATT
GGTTTTTGAGTTGCCAGACACATAGACGCGTTGAGTGAGGATAGCTGCAT
ACTGAAACCTCACAGATGGATTGGTTTTTGAGTTTGCCAGACACATAGAC
GCGTTGAGTGGGGATAGCTACATACTGAAACCTCACGAGTTGAGTGATGT
TGGATAGTGCCGGACACATAGACGCTTTGAGTGAGGAAAGACACATACTG
GAACCTCACAGGTGATTTGTATTGGAGATTGCCGGACACCCAGACGCGTT
GAGTAAAGATACCTGCATACTGACACCTCAAAGATGGATTGGTTGTTGAG
TTTGCCAGACACAGTCTAGACGCGCTGCGTGGGGATAGCTACATGCTGAA
ACCTCACGAGTTGAGTGATGTTGGATAGTGCCAGACACATAGACGTTTTG
AGCGAGGAAAGACACATACTGAAACCTCACAGGTTGATTTGTATTGAGAT
TGCCGGACACCCAGACGCGTTGAGTGAAGATACCTGCATCCTGACACCTC
AAAGATGGATTGGTTGTTGAGTTTGCCAGACACAGTCTAGACGCGCTGCG
TGGGGATAGCTACATACTGAAACCTCACGAGTTGAGTGATGTTGGATAGT
GCCGGACACATAGACGCTTTGAGTGAGGAAAGACACATACTGAAACCTCA
CAGGTGATTTGTATTGGAGATTGCCGGACACATAGACGTGTTGAGTGAGG
ATAGCTGCATACTGAAACCTCACAGATGGATTGGTTTTTGAGTTTGCCAG
ACACATAGACGCGCTGAGTGGGGATAGCTACATACTGAAACCTCACGAGT
TGAGTGATGTTGGATAGTGCCGGACACATTGACGCTTTGAGTGAGGAAAG
ACACATACTGAAACCTCACGGGTGATTTGTATTGGAGATTGCCGGACACA
TAGACGTGTTGAGTGAGGATAGCTGCATACTGAAACCTCACAGATGGATT
GGTTTTTGAGTTTGCCAGACACATAGACGCGTTGAGTGGGGATAGCTACA
TACTGA
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Coding sequence (CDS) from alignment at Scaffold_259:437854..439559+

>EsuBft1134_2a-0001 ID=EsuBft1134_2a-0001|Name=EsuBft1134_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=141bp|location=Sequence derived from alignment at Scaffold_259:437854..439559+ (Ectocarpus subulatus male Bft15b)
ATGTTGAGTGATTATAGCTGTATACTGAAACCCCACGGAAAGGGGAGGTT
TGAGATTGCCAGACACATGGACGGGTTGAGTGGGGATAGCTGCATCCTGA
AACCCCACTGGTTGAGTGATGTTGGAGTACCGGACACATAG
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