EsuBft1133_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1133_8a-0001
Unique NameEsuBft1133_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_99contigScaffold_99:92222..93887 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog6500.XP_005092035.1
ProteomeIdEsuBft1133_8
Protein domainsPTHR19446
Protein domainsSSF56672
Protein domainsIPR000477
Ownerapollo_admin@sb-roscoff.fr
Noteline-1 retrotransposable element orf2 protein os:mus musculus gn:pol pe:1 sv:2 [Automatic annotation]
Nb exon2
Max annot lvl33208|Metazoa
Length1624
Hectar predicted targeting categoryother localisation
Evalue5.99e-70
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,39TZY@33154|Opisthokonta,3BI15@33208|Metazoa,3D94V@33213|Bilateria
Date last modified2016-06-14
Date creation2016-06-14
DescriptionRibonuclease H protein
COG categoryS
Cross References
External references for this mRNA
DatabaseAccession
GO0006259
EC3.1
GO0004518
GO0016740
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1133_8aEsuBft1133_8aEctocarpus subulatus male Bft15bgeneScaffold_99 92222..93887 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1133_8a-0001-exonEsuBft1133_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_99 92222..92807 +
EsuBft1133_8a-0001-exonagat-exon-105982Ectocarpus subulatus male Bft15bexonScaffold_99 92850..93887 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1133_8a-0001-exonagat-five_prime_utr-812Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_99 92222..92327 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1133_8a-0001-cdsEsuBft1133_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_99 92328..92807 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1133_8a-0001EsuBft1133_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_99 92328..93887 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1133_8a-0001 ID=EsuBft1133_8a-0001|Name=EsuBft1133_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1624bp|location=Sequence derived from alignment at Scaffold_99:92222..93887+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CGAAGCGCAACACGAGATCTCCGAAGCGTCTTAGGAGATTAAGGCGGCCC
AGCTGCAACTGCGTGGGGTCTCAAAGAACAACGCCTTCGAGGCGACCCTG
AAGGCGATGCTCAAGGCGGCGCGGAAGAAGCGCAGCATCGCGAGGTGGAG
AGCACTGGAAACGTTCTTCGAGGGCTATGTACGGCAGCTCGAGAAGAAGA
GCCGCGAGGGGGATCAGGCGGGTTTCTACAGGCACCTGAAGATGATCGAC
GTCGAAGGTAAGAGGTCGTTCACCTCTCAGAACATCAAGGACGAGGACGG
TAATATCCTTCGGTACCCCACGTTTATTCGCCAACGATGGGCACGGTGGT
TCCACAAGCTTCTCAACACCAAGTCGCCGACCATCGACCTGCATGCGGCT
GACAAGGTCAAGCGGTGGCCCACGTGCGTGCCACTCGACGACATCCCATC
TCTACTTGAGGTTGAGGAAGCGGTACGGGAAATAGCCAACAGAAAGGCCG
TCGGGCCGGACGACCTACCGGCTGAGCTGATCAAGCTTTTCCTGGACGGA
GATCAAGGTCTCCTCCGCGAATTCCACACCATTGTCGATGCCACCCTCAA
CGTGCTGTTCAAGAAGGGGGACACGATGGAGTGCGGCAACTACCGGGGCA
TCTCTCTCGTCGCACACGCCGGCAAGGTGCTGCTTAAGGTCGTCGCTACA
CGACTGAGCCACTACTGCGAGCGAGAGGGCATCCTCCCGGAGGAGCAGAG
CGGTTTCCGCCCACACCGGTCGACGCTCGACATGCTGTTCGCCATCCAGC
GGCTCCATGAGCTCGCGAGGAAGAAGAGTACTGCGGTGTTCGCGTGCTTC
GTCGACCTCACCAAGGCATACGATTCGGTGGACCGAGACCTACTGTGGGA
CGTGCTCCGACGCTTCGGCGTGCCCCCGAAGATGCTGGCGGTCATTCGCC
ACTTCCACGAGGGCATGAGGGCGCGCGTCCGAACGGACGACGGGCAGTAC
TCGGAATGGTTTGACGTGGGCCAAGGCCTCCGACAGGGATGCAACCTGGC
CCCGCTGCTGTTCAACTTGTTCTTTGCCCCGATGCTCATGGCCGCCGTGG
CCGAGCTCGACAAGGACCCCAAGGTGACGGCGGACATGGTCAAGATCGGG
ACACAAGTGGAGTACACGGGCAAGAAGGGCAGGTCGGCGGGGAAGAAGAC
GACGGTGGTGACGGACGCGGAGGCCCTGTGGGCCATGCTCTACGCTGACG
ACGCGGCCATCGTCTCGCGCTCGCCGGAGAGTCTCGAGAAGATGATGTCG
GTCATCGTGCGCGTGGCCGGCCTGTTCGGACTGATGGTATCGGAGCCAAA
GACGGAGATCATGTGCATGCTGCCAAAAGGGATCGAGGAACGCCCGTCCA
CGGTCAGCGCCGCCGGCCAGACGTACAAGCAGACAGATCGGTTTGTGTAC
CTCGGACGTACCATCTCCGCGGACGGGAAGGCCGACCGGGAGATCACGAG
CCGCAGCTGCCGAGCGTGGAAGTGCTACCGCCGGAACAGTGTGCTTCGAT
GTAGGACAGGCGACGGGCCAACCCCCAGCTCAAGATCCGGCTACTCCAGG
CTGAAGTGGTGGAGACTCTCCTGN
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protein sequence of EsuBft1133_8a-0001

>EsuBft1133_8 ID=EsuBft1133_8|Name=EsuBft1133_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=506bp
MLKAARKKRSIARWRALETFFEGYVRQLEKKSREGDQAGFYRHLKMIDVE
GKRSFTSQNIKDEDGNILRYPTFIRQRWARWFHKLLNTKSPTIDLHAADK
VKRWPTCVPLDDIPSLLEVEEAVREIANRKAVGPDDLPAELIKLFLDGDQ
GLLREFHTIVDATLNVLFKKGDTMECGNYRGISLVAHAGKVLLKVVATRL
SHYCEREGILPEEQSGFRPHRSTLDMLFAIQRLHELARKKSTAVFACFVD
LTKAYDSVDRDLLWDVLRRFGVPPKMLAVIRHFHEGMRARVRTDDGQYSE
WFDVGQGLRQGCNLAPLLFNLFFAPMLMAAVAELDKDPKVTADMVKIGTQ
VEYTGKKGRSAGKKTTVVTDAEALWAMLYADDAAIVSRSPESLEKMMSVI
VRVAGLFGLMVSEPKTEIMCMLPKGIEERPSTVSAAGQTYKQTDRFVYLG
RTISADGKADREITSRSCRAWKCYRRNSVLRCRTGDGPTPSSRSGYSRLK
WWRLSX
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mRNA from alignment at Scaffold_99:92222..93887+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1133_8a-0001 ID=EsuBft1133_8a-0001|Name=EsuBft1133_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1666bp|location=Sequence derived from alignment at Scaffold_99:92222..93887+ (Ectocarpus subulatus male Bft15b)
CGAAGCGCAACACGAGATCTCCGAAGCGTCTTAGGAGATTAAGGCGGCCC
AGCTGCAACTGCGTGGGGTCTCAAAGAACAACGCCTTCGAGGCGACCCTG
AAGGCGATGCTCAAGGCGGCGCGGAAGAAGCGCAGCATCGCGAGGTGGAG
AGCACTGGAAACGTTCTTCGAGGGCTATGTACGGCAGCTCGAGAAGAAGA
GCCGCGAGGGGGATCAGGCGGGTTTCTACAGGCACCTGAAGATGATCGAC
GTCGAAGGTAAGAGGTCGTTCACCTCTCAGAACATCAAGGACGAGGACGG
TAATATCCTTCGGTACCCCACGTTTATTCGCCAACGATGGGCACGGTGGT
TCCACAAGCTTCTCAACACCAAGTCGCCGACCATCGACCTGCATGCGGCT
GACAAGGTCAAGCGGTGGCCCACGTGCGTGCCACTCGACGACATCCCATC
TCTACTTGAGGTTGAGGAAGCGGTACGGGAAATAGCCAACAGAAAGGCCG
TCGGGCCGGACGACCTACCGGCTGAGCTGATCAAGCTTTTCCTGGACGGA
GATCAAGGTCTCCTCCGCGAATTCCACACCATTGTCGTAGACGTGTGGCA
GGCTGGGGCCGTACCACAGCAGTGAAAGGATGCCACCCTCAACGTGCTGT
TCAAGAAGGGGGACACGATGGAGTGCGGCAACTACCGGGGCATCTCTCTC
GTCGCACACGCCGGCAAGGTGCTGCTTAAGGTCGTCGCTACACGACTGAG
CCACTACTGCGAGCGAGAGGGCATCCTCCCGGAGGAGCAGAGCGGTTTCC
GCCCACACCGGTCGACGCTCGACATGCTGTTCGCCATCCAGCGGCTCCAT
GAGCTCGCGAGGAAGAAGAGTACTGCGGTGTTCGCGTGCTTCGTCGACCT
CACCAAGGCATACGATTCGGTGGACCGAGACCTACTGTGGGACGTGCTCC
GACGCTTCGGCGTGCCCCCGAAGATGCTGGCGGTCATTCGCCACTTCCAC
GAGGGCATGAGGGCGCGCGTCCGAACGGACGACGGGCAGTACTCGGAATG
GTTTGACGTGGGCCAAGGCCTCCGACAGGGATGCAACCTGGCCCCGCTGC
TGTTCAACTTGTTCTTTGCCCCGATGCTCATGGCCGCCGTGGCCGAGCTC
GACAAGGACCCCAAGGTGACGGCGGACATGGTCAAGATCGGGACACAAGT
GGAGTACACGGGCAAGAAGGGCAGGTCGGCGGGGAAGAAGACGACGGTGG
TGACGGACGCGGAGGCCCTGTGGGCCATGCTCTACGCTGACGACGCGGCC
ATCGTCTCGCGCTCGCCGGAGAGTCTCGAGAAGATGATGTCGGTCATCGT
GCGCGTGGCCGGCCTGTTCGGACTGATGGTATCGGAGCCAAAGACGGAGA
TCATGTGCATGCTGCCAAAAGGGATCGAGGAACGCCCGTCCACGGTCAGC
GCCGCCGGCCAGACGTACAAGCAGACAGATCGGTTTGTGTACCTCGGACG
TACCATCTCCGCGGACGGGAAGGCCGACCGGGAGATCACGAGCCGCAGCT
GCCGAGCGTGGAAGTGCTACCGCCGGAACAGTGTGCTTCGATGTAGGACA
GGCGACGGGCCAACCCCCAGCTCAAGATCCGGCTACTCCAGGCTGAAGTG
GTGGAGACTCTCCTGN
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Coding sequence (CDS) from alignment at Scaffold_99:92222..93887+

>EsuBft1133_8a-0001 ID=EsuBft1133_8a-0001|Name=EsuBft1133_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1518bp|location=Sequence derived from alignment at Scaffold_99:92222..93887+ (Ectocarpus subulatus male Bft15b)
ATGCTCAAGGCGGCGCGGAAGAAGCGCAGCATCGCGAGGTGGAGAGCACT
GGAAACGTTCTTCGAGGGCTATGTACGGCAGCTCGAGAAGAAGAGCCGCG
AGGGGGATCAGGCGGGTTTCTACAGGCACCTGAAGATGATCGACGTCGAA
GGTAAGAGGTCGTTCACCTCTCAGAACATCAAGGACGAGGACGGTAATAT
CCTTCGGTACCCCACGTTTATTCGCCAACGATGGGCACGGTGGTTCCACA
AGCTTCTCAACACCAAGTCGCCGACCATCGACCTGCATGCGGCTGACAAG
GTCAAGCGGTGGCCCACGTGCGTGCCACTCGACGACATCCCATCTCTACT
TGAGGTTGAGGAAGCGGTACGGGAAATAGCCAACAGAAAGGCCGTCGGGC
CGGACGACCTACCGGCTGAGCTGATCAAGCTTTTCCTGGACGGAGATCAA
GGTCTCCTCCGCGAATTCCACACCATTGTCGATGCCACCCTCAACGTGCT
GTTCAAGAAGGGGGACACGATGGAGTGCGGCAACTACCGGGGCATCTCTC
TCGTCGCACACGCCGGCAAGGTGCTGCTTAAGGTCGTCGCTACACGACTG
AGCCACTACTGCGAGCGAGAGGGCATCCTCCCGGAGGAGCAGAGCGGTTT
CCGCCCACACCGGTCGACGCTCGACATGCTGTTCGCCATCCAGCGGCTCC
ATGAGCTCGCGAGGAAGAAGAGTACTGCGGTGTTCGCGTGCTTCGTCGAC
CTCACCAAGGCATACGATTCGGTGGACCGAGACCTACTGTGGGACGTGCT
CCGACGCTTCGGCGTGCCCCCGAAGATGCTGGCGGTCATTCGCCACTTCC
ACGAGGGCATGAGGGCGCGCGTCCGAACGGACGACGGGCAGTACTCGGAA
TGGTTTGACGTGGGCCAAGGCCTCCGACAGGGATGCAACCTGGCCCCGCT
GCTGTTCAACTTGTTCTTTGCCCCGATGCTCATGGCCGCCGTGGCCGAGC
TCGACAAGGACCCCAAGGTGACGGCGGACATGGTCAAGATCGGGACACAA
GTGGAGTACACGGGCAAGAAGGGCAGGTCGGCGGGGAAGAAGACGACGGT
GGTGACGGACGCGGAGGCCCTGTGGGCCATGCTCTACGCTGACGACGCGG
CCATCGTCTCGCGCTCGCCGGAGAGTCTCGAGAAGATGATGTCGGTCATC
GTGCGCGTGGCCGGCCTGTTCGGACTGATGGTATCGGAGCCAAAGACGGA
GATCATGTGCATGCTGCCAAAAGGGATCGAGGAACGCCCGTCCACGGTCA
GCGCCGCCGGCCAGACGTACAAGCAGACAGATCGGTTTGTGTACCTCGGA
CGTACCATCTCCGCGGACGGGAAGGCCGACCGGGAGATCACGAGCCGCAG
CTGCCGAGCGTGGAAGTGCTACCGCCGGAACAGTGTGCTTCGATGTAGGA
CAGGCGACGGGCCAACCCCCAGCTCAAGATCCGGCTACTCCAGGCTGAAG
TGGTGGAGACTCTCCTGN
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