EsuBft1133_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1133_4a-0001
Unique NameEsuBft1133_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_99contigScaffold_99:138873..141223 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FTF0
ProteomeIdEsuBft1133_4
Protein domainsPTHR24015
Protein domainsIPR011990
Protein domainsSSF48452
Protein domainsIPR002885
Ownerapollo_admin@sb-roscoff.fr
Notepentatricopeptide repeat-containing protein mitochondrial os:arabidopsis thaliana gn:at1g62670 [Automatic annotation]
Nb exon4
Max annot lvl2880.D7FTF0|-
Length657
Hectar predicted targeting categoryother localisation
Evalue1.82e-34
EggNOG OGsKOG4197@1|root,KOG4197@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Descriptionendonuclease activity
COG categoryS
Cross References
External references for this mRNA
DatabaseAccession
GO0031227
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1133_4aEsuBft1133_4aEctocarpus subulatus male Bft15bgeneScaffold_99 138873..141223 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1133_4a-0001-exonagat-exon-105946Ectocarpus subulatus male Bft15bexonScaffold_99 138873..139076 +
EsuBft1133_4a-0001-exonagat-exon-105945Ectocarpus subulatus male Bft15bexonScaffold_99 139577..139725 +
EsuBft1133_4a-0001-exonEsuBft1133_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_99 140252..140361 +
EsuBft1133_4a-0001-exonagat-exon-105944Ectocarpus subulatus male Bft15bexonScaffold_99 141030..141223 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1133_4a-0001-cdsEsuBft1133_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_99 138873..139076 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1133_4a-0001EsuBft1133_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_99 138873..141223 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1133_4a-0001 ID=EsuBft1133_4a-0001|Name=EsuBft1133_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=657bp|location=Sequence derived from alignment at Scaffold_99:138873..141223+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCCTGCAATACTGCCTGTTTCAGGCCATCAGCCTCTGTGGGAGACA
GGGGGGGTGGGAGGACGCCATATTTCTGTTGCGGGACGCCCAGAGGTTAT
CGTCTCCGGGGCAGTTGCGGGGTGTGGATGTGGTGACGTATAGCGCGGCG
GTGGCGGCTTGCCGAGACGGAGGGCAGTGGCGACAGGCGCTAGCACTGAT
GGAGGAAATGCAGGCGGCGGGGATCAAGCCAGATCAGATAGCGTACGGGA
CGGCGGTCAGCGCGTGCGCCATGGCGGGCCAGTGGGAGAAAGCTGTCGAC
CTGCTCGCGGACATGCGGAGATCGAAACTACGCCCCGATGTCGTTGCATA
CAGCTCTGCTATCAAAGCTTGCGGTGCCGAAGGCCGGTGGGAAGAGGCTC
TCGGCCTGCTGAAGGAAATGCAGGAAAGCGGGGTCCGGCCAAATCTCATC
ACCTATACCGGAGCCATGGAGGCGTGCGGGCGAGCGGGGCGGTGGAACAA
CGCTCTGCGGCTGCTCGCGGAGGTGCGAGATCGGGGTCTGCGGCCGGACA
CGTTCACGCTCAATGCCGTCATGGACGCCCTCGGAAGGTGCAAGGACTCC
GCGCGGTGTCGACGGGAAACGGGAGGGGTGTGGTACCGGTGTAGAAAGGG
GGTGTAG
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protein sequence of EsuBft1133_4a-0001

>EsuBft1133_4 ID=EsuBft1133_4|Name=EsuBft1133_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=218bp
MSLQYCLFQAISLCGRQGGWEDAIFLLRDAQRLSSPGQLRGVDVVTYSAA
VAACRDGGQWRQALALMEEMQAAGIKPDQIAYGTAVSACAMAGQWEKAVD
LLADMRRSKLRPDVVAYSSAIKACGAEGRWEEALGLLKEMQESGVRPNLI
TYTGAMEACGRAGRWNNALRLLAEVRDRGLRPDTFTLNAVMDALGRCKDS
ARCRRETGGVWYRCRKGV
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mRNA from alignment at Scaffold_99:138873..141223+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1133_4a-0001 ID=EsuBft1133_4a-0001|Name=EsuBft1133_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2351bp|location=Sequence derived from alignment at Scaffold_99:138873..141223+ (Ectocarpus subulatus male Bft15b)
ATGTCCCTGCAATACTGCCTGTTTCAGGCCATCAGCCTCTGTGGGAGACA
GGGGGGGTGGGAGGACGCCATATTTCTGTTGCGGGACGCCCAGAGGTTAT
CGTCTCCGGGGCAGTTGCGGGGTGTGGATGTGGTGACGTATAGCGCGGCG
GTGGCGGCTTGCCGAGACGGAGGGCAGTGGCGACAGGCGCTAGCACTGAT
GGAGGTGGAGAGTCATGACCATGCTAGGCGTCGTTTTCACCTCATTGTAG
TTGTCTGTCGTCCGGGCAGGTGTTGGGAAGATTAGACATTGCATGTACAT
ATATTTAGATTTTTTTAATACGAAAACAAGACAAGTTACTCTTCATTCAG
GGACAGAGTCCAGGATACCTATTGCAGAGTTTGGGGCTGGGTTTCCACCG
CCGGCGTTTTTATCCTCGCCATAAGACCCCCTTGGTGCTTTAGCATGGAA
TCTGCTGTAGTTTGGGGCGGTGGTTTCCGGAGTGGTGTTCGATTTGTGTC
ATTGTGGTCTCCCCATTATGGTTGTACGCAACCTTGCACTGACAGTTGTG
AAGGTTTTGTCGGGTCAAAGCCATGTGAGGGCTTCGAACTCTCAAGCCAT
CGAGTGGCCTGCTATAGCGACAGAGCGCTAGATGCTAAAGCTATCTGCTC
TTAGTTCGTTTCCCATCCCTGCTTTTAAACGTACACGGTCATGTCATGCT
GCAGGAAATGCAGGCGGCGGGGATCAAGCCAGATCAGATAGCGTACGGGA
CGGCGGTCAGCGCGTGCGCCATGGCGGGCCAGTGGGAGAAAGCTGTCGAC
CTGCTCGCGGACATGCGGAGATCGAAACTACGCCCCGATGTCGTTGCATA
CAGGTAAAATTACAACGCCAAGCGTAAAGGTACACCGGGCCTTCAAAATC
CAACCGATGGGATGGCCGCAAGTAAAGACACAGCTCAATTCAGATGCAAG
GCACATTAACAGGGAAATACCATGCAGCTAGACTCAAGTGACGCACACAG
CCACAACGTACAAATGGACAAGCCCAACGCACACATGTAGGGTAGGGGCG
CGGAGCAACAACTCGCAACTAGAAGAAGCAGATGACGTCGCCGGCAGCGG
AATTTTCACACATGACGTTGGGGCTCCCCTCTTGCGAGGGCCTGCAACTG
TCGTTACATGGCAGAAGCGGACCCACCGTGAAGTTGATTTTCAGTCAACG
GTGCGTAAAAACACGTATCAAAATAAGTTCGGGAGGTTAAACACGATGGC
CGAAAGGCCTGCTCGCGGAGGTCGGACTATGATGTGCAACACTTCATTTT
TTTGTGTATCCTTCTGTTCACGGCCAACCCCGCTCCTGACCCTGCAAACA
AACACTCGGAATGAATTCTTGCGGGACAGCTCTGCTATCAAAGCTTGCGG
TGCCGAAGGCCGGTGGGAAGAGGCTCTCGGCCTGCTGAAGGAAATGCAGG
AAAGCGGGGTCCGGCCAAATCTCATCACCTATACCGGAGGTATGTAAATG
GCTACAGCGGCACGTGCACCGCCGCAACATTTGTGCGGTGTTTGTCGAAG
AACAGAACGATAAGCTTTGGTGGCCTAAAGCTTGTACGCCGCGCTTCACC
TCATACAGCGGCGCACCGCGTTGGAAAGCACACGATCGTTGACAGCCTGA
AGCTATTATTGGCAATGCCTAGTCCCTTTCATGTTCCGTTTCTAATCAGT
ACTCTGTCGATGTTGAGATGCTCGTGCGTCGCAAACCACCTTAGCGAGGA
TAGCCTTGACACGTGATTCGTGCTCTCCTGTGCCAAGTTGCCATATCTAG
CTCGCTTCCTCCTCACCCACGCCATTCTTCGGTGCGGCATCGCTTTGCTG
CAAGAAAGCCTTCCATGAATGAAGAGACCCACGCCACCCCAGCTGCTGTC
AGCAGGGTGTTTATTGCAGCCGAAATATGGAGATCATTATACCAATCAGC
GCTGACTGGTCAATATGGTTTGATTTCGGCAGGCATAAAGTGCTGTGAGA
AGAACGCGGGCGCAGGCAAAGTTATACAACTCAAACTGATTTTTCGGCCG
GTAGAGTCTTCGTTCTCTGCTCTTGGGAAGCTGCAACTACCCCCTTTTTA
CGCGTATGACATATTTCGCCGCTTTCTTATCTATTGCGGTGGGTTCCTCC
CACGTAGCCATGGAGGCGTGCGGGCGAGCGGGGCGGTGGAACAACGCTCT
GCGGCTGCTCGCGGAGGTGCGAGATCGGGGTCTGCGGCCGGACACGTTCA
CGCTCAATGCCGTCATGGACGCCCTCGGAAGGTGCAAGGACTCCGCGCGG
TGTCGACGGGAAACGGGAGGGGTGTGGTACCGGTGTAGAAAGGGGGTGTA
G
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Coding sequence (CDS) from alignment at Scaffold_99:138873..141223+

>EsuBft1133_4a-0001 ID=EsuBft1133_4a-0001|Name=EsuBft1133_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=657bp|location=Sequence derived from alignment at Scaffold_99:138873..141223+ (Ectocarpus subulatus male Bft15b)
ATGTCCCTGCAATACTGCCTGTTTCAGGCCATCAGCCTCTGTGGGAGACA
GGGGGGGTGGGAGGACGCCATATTTCTGTTGCGGGACGCCCAGAGGTTAT
CGTCTCCGGGGCAGTTGCGGGGTGTGGATGTGGTGACGTATAGCGCGGCG
GTGGCGGCTTGCCGAGACGGAGGGCAGTGGCGACAGGCGCTAGCACTGAT
GGAGGAAATGCAGGCGGCGGGGATCAAGCCAGATCAGATAGCGTACGGGA
CGGCGGTCAGCGCGTGCGCCATGGCGGGCCAGTGGGAGAAAGCTGTCGAC
CTGCTCGCGGACATGCGGAGATCGAAACTACGCCCCGATGTCGTTGCATA
CAGCTCTGCTATCAAAGCTTGCGGTGCCGAAGGCCGGTGGGAAGAGGCTC
TCGGCCTGCTGAAGGAAATGCAGGAAAGCGGGGTCCGGCCAAATCTCATC
ACCTATACCGGAGCCATGGAGGCGTGCGGGCGAGCGGGGCGGTGGAACAA
CGCTCTGCGGCTGCTCGCGGAGGTGCGAGATCGGGGTCTGCGGCCGGACA
CGTTCACGCTCAATGCCGTCATGGACGCCCTCGGAAGGTGCAAGGACTCC
GCGCGGTGTCGACGGGAAACGGGAGGGGTGTGGTACCGGTGTAGAAAGGG
GGTGTAG
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