EsuBft1133_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1133_2a-0001
Unique NameEsuBft1133_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_99contigScaffold_99:162818..164260 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1133_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length134
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1133_2aEsuBft1133_2aEctocarpus subulatus male Bft15bgeneScaffold_99 162818..164260 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1133_2a-0001-exonagat-exon-105932Ectocarpus subulatus male Bft15bexonScaffold_99 162818..164129 -
EsuBft1133_2a-0001-exonEsuBft1133_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_99 164228..164260 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1133_2a-0001-exonagat-three_prime_utr-1267Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_99 162818..164051 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1133_2a-0001-cdsEsuBft1133_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_99 164052..164129 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1133_2a-0001EsuBft1133_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_99 164052..164260 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1133_2a-0001 ID=EsuBft1133_2a-0001|Name=EsuBft1133_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1345bp|location=Sequence derived from alignment at Scaffold_99:162818..164260- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACACGGCCCTATGTTTGCTAGAGGGAGCTACCAAGAACCCCAAGTG
CAACGAGGGAGAAAGCGAGGAACCGAGTGGGAAGGACAGCAACGAGAGCG
TGTACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCGGCACCGGAGCAGC
GGCACCGGAGCATGCGGACGGCATCGAACCGTGGCGCACGGACAAACATC
TCTTGTGTTGTCAAATATTTTCCCGTTTTTTTCCTGAGTATTATAGGTGT
TGGGTGTGGGTGATGACGTCACTGGTTTTGTAGAGAGACGCGGTAGAGAT
GGCGCGGATAATCCGGGTGCCTTAATTGTGTACCTGCATCGTGGAAGACC
CCTTCAATGTGGAACGATTCCTAGTCAGTGTCGATGTTTACACTGCTGTG
CCTAATACAGATGATCTGGATAGATTCGGGTGATTGTCAATTGCAATGAT
GGCTTTGGTTGGGTGTTCTTCTTCATTGTATGTCCACGGACCTATTCTGA
CAGCACTTCAGACAGCAGCTGCATGCCCCGAGCTTGTGTACCATGCACCA
TCGTCTTATTATTGTACAGACAGCACTTCAGACAGCAGTACGCTGTAGTC
GACATTCATTTTATATGTGTGTTTTCGTCCTATTTATTATGGCGACAGTC
CCCCCATTTTACGTGGTGACACGTGCACTACACTTTTCAGCGTATGTAGA
GTAATGTAGAGTAAAATCAGTGTATTTTTTCGTACAACTACAACCATCCA
GGGTCACACAGGAGGGGATAAACACCAGGGCTTTTTTCTCCTTTTTATTT
ATTTTCATGCCCTACCTTCCTCCTGCGGTGCGTGCTGAATTTTATTTTTA
TCGCGAGAAGGGTCCAGCCGTCCCTTTCCCTCGTCAACGGTGCTAAACGG
TGCTGACGTCGAAGTTTGGTACTCACGAGAGCTTTTGAGCTAAATTTCGC
TTTCACCCGCAAATTACGTAGTTTTTTCACCCCAACGGGATTTGAACTCA
TGACCTCAGCAACCAGCGGATTACGAGGATACCACTAGACCACCGGGGCG
ACCGGAGTGTTTTGGTTAAATGCGGAACAAGGGGGGTGATGCTGCTGCTG
TAGTCGAATCGTAGTGTGTGGGCGCGTAGTTCAGTTGTGAGGACGCAAAC
GTGCTGCAGGGATTGTAGGTGTACCTCCTCGGGCTTGTGTACCCTTTTCT
TGCTAATAGTGTGTGTGTTCTTTAGACCTTCTGATGGCTCTAGCATTGTG
TGACCACGGACCGAGTCTTTGCTAGGTTTTGGGATTAGCAACTGA
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protein sequence of EsuBft1133_2a-0001

>EsuBft1133_2 ID=EsuBft1133_2|Name=EsuBft1133_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=37bp
MYTALCLLEGATKNPKCNEGESEEPSGKDSNESVYXX
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mRNA from alignment at Scaffold_99:162818..164260-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1133_2a-0001 ID=EsuBft1133_2a-0001|Name=EsuBft1133_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1443bp|location=Sequence derived from alignment at Scaffold_99:162818..164260- (Ectocarpus subulatus male Bft15b)
ATGTACACGGCCCTATGTTTGCTAGAGGGAGCTGTACTGTCTCAGTAACC
TGGTTTTACCATCAAGGGAGGAGGGTACAGGTGGTGACTAGCTGATTGAG
CTGGTTGACCCTTCGGCGCGAGAAATTTCAGACCAAGAACCCCAAGTGCA
ACGAGGGAGAAAGCGAGGAACCGAGTGGGAAGGACAGCAACGAGAGCGTG
TACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCGGCACCGGAGCAGCGG
CACCGGAGCATGCGGACGGCATCGAACCGTGGCGCACGGACAAACATCTC
TTGTGTTGTCAAATATTTTCCCGTTTTTTTCCTGAGTATTATAGGTGTTG
GGTGTGGGTGATGACGTCACTGGTTTTGTAGAGAGACGCGGTAGAGATGG
CGCGGATAATCCGGGTGCCTTAATTGTGTACCTGCATCGTGGAAGACCCC
TTCAATGTGGAACGATTCCTAGTCAGTGTCGATGTTTACACTGCTGTGCC
TAATACAGATGATCTGGATAGATTCGGGTGATTGTCAATTGCAATGATGG
CTTTGGTTGGGTGTTCTTCTTCATTGTATGTCCACGGACCTATTCTGACA
GCACTTCAGACAGCAGCTGCATGCCCCGAGCTTGTGTACCATGCACCATC
GTCTTATTATTGTACAGACAGCACTTCAGACAGCAGTACGCTGTAGTCGA
CATTCATTTTATATGTGTGTTTTCGTCCTATTTATTATGGCGACAGTCCC
CCCATTTTACGTGGTGACACGTGCACTACACTTTTCAGCGTATGTAGAGT
AATGTAGAGTAAAATCAGTGTATTTTTTCGTACAACTACAACCATCCAGG
GTCACACAGGAGGGGATAAACACCAGGGCTTTTTTCTCCTTTTTATTTAT
TTTCATGCCCTACCTTCCTCCTGCGGTGCGTGCTGAATTTTATTTTTATC
GCGAGAAGGGTCCAGCCGTCCCTTTCCCTCGTCAACGGTGCTAAACGGTG
CTGACGTCGAAGTTTGGTACTCACGAGAGCTTTTGAGCTAAATTTCGCTT
TCACCCGCAAATTACGTAGTTTTTTCACCCCAACGGGATTTGAACTCATG
ACCTCAGCAACCAGCGGATTACGAGGATACCACTAGACCACCGGGGCGAC
CGGAGTGTTTTGGTTAAATGCGGAACAAGGGGGGTGATGCTGCTGCTGTA
GTCGAATCGTAGTGTGTGGGCGCGTAGTTCAGTTGTGAGGACGCAAACGT
GCTGCAGGGATTGTAGGTGTACCTCCTCGGGCTTGTGTACCCTTTTCTTG
CTAATAGTGTGTGTGTTCTTTAGACCTTCTGATGGCTCTAGCATTGTGTG
ACCACGGACCGAGTCTTTGCTAGGTTTTGGGATTAGCAACTGA
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Coding sequence (CDS) from alignment at Scaffold_99:162818..164260-

>EsuBft1133_2a-0001 ID=EsuBft1133_2a-0001|Name=EsuBft1133_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=111bp|location=Sequence derived from alignment at Scaffold_99:162818..164260- (Ectocarpus subulatus male Bft15b)
ATGTACACGGCCCTATGTTTGCTAGAGGGAGCTACCAAGAACCCCAAGTG
CAACGAGGGAGAAAGCGAGGAACCGAGTGGGAAGGACAGCAACGAGAGCG
TGTACGNNNNN
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