EsuBft1133_14a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1133_14a-0001
Unique Name	EsuBft1133_14a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_99	contig	Scaffold_99:55115..56349 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1133_14
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	SIGNAL_PEPTIDE_H_REGION
Protein domains	SIGNAL_PEPTIDE
Protein domains	SignalP-noTM
Protein domains	SIGNAL_PEPTIDE_N_REGION
Protein domains	SIGNAL_PEPTIDE_C_REGION
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	123
Hectar predicted targeting category	signal peptide
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1133_14a	EsuBft1133_14a	Ectocarpus subulatus male Bft15b	gene	Scaffold_99 55115..56349 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1133_14a-0001-exon	EsuBft1133_14a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_99 55115..56349 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1133_14a-0001-cds	EsuBft1133_14a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_99 55115..55300 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1133_14a-0001-exon	agat-three_prime_utr-1266	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_99 55301..56349 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1133_14a-0001	EsuBft1133_14	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_99 55115..55300 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_99:55115..56349+
coding sequence from alignment at Scaffold_99:55115..56349+

spliced messenger RNA

>EsuBft1133_14a-0001 ID=EsuBft1133_14a-0001|Name=EsuBft1133_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1235bp|location=Sequence derived from alignment at Scaffold_99:55115..56349+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAAGCACCCGTCACCACCAACTAGTAGTTGCAGCAGCGGGTTTTTG
GCAATTGCTGGCGGTGCCTGGAATAAAAAGAGTAAAAAAGGAAGAACTTC
TGGGCCATTCTATCGCGAAACATCTGTATATCTCGACGTCCACTACGTCG
ATTCGCAAGCAGGTTGCTGCAGTAGATGCGGAGTGAGCGAGATATCACCT
AGATCTGTCCGTCCTGTGAATGACTGCCCCCTTATGTCCACTCTTATTGC
TGTTTTGTAGGCATATCAACACAACACGCAAGCACGCACGCCAACAAGCC
GCTTCTCTTCCTGCCGTTAGCTACAGCAGCGACGGCGTCTTGCTTCGATG
TCCCACACTCCTCCTTCTGTGTGTGATGTGCTGGGTGCTCTGCATGCTAT
GTCTCTCGTGTATTGCCCAGAACGCAGGTGAAGTGTGCGCCTCTTGCGCC
CCTTGTCATTTGTGCCACAGTACCGGGCGGCCAAGTCCCGCCTGTACTTC
TAGTACAAAAAATTGCGCAACACGAGCGACGAGCGGGGCGCCGCCACTAA
AGCACGGCCTCTACCTACATAATCCGAATCCACTCGCCTGTCCCAGATTC
TGTTGAAGTCCCTCCTGATCTCACGGCCACACGATAGGTACTTGGACCAA
ACCAGACCGTCGGTGTTGGAGAGCCTTTTGGCTGCGGCAAAAGGCAGCGG
CATCGCGACCGCGGGGCAGAACACCGCATGCGTAGAAGGTGTGGATAAGA
TTTGTGTTCATCTCTCGTTGTACAGAAATATTTCCCACGAAACCCTTGGG
AGTATGTGTGCCCAAGGATTGTGCCCGACAAGTCTATTACAGCCATGATG
TACCAACAGCACGACTACGCACCGCAGCACCAGCGGGAGAGAGCGCCTAC
ACTATTGTACGACAGCAGTATTATTGCAGTTGTACAGCCAGCCTGTGCTT
TGTGCGTGTCTATCCCTTACCTGAATCGTTTCCGGTGGTCATGCCCATGA
GGTCTTGGGTCAGCCAACTCGGGGGGGTTTGAATGACCACGGTCTTCCAC
CAACACAGGAAGCTTGGAACGGTGAAGTTCTTGTAGTTGGTCCTGGCGTG
TGCATCCCTCTGTTGGGTTGACATGGTCCCGGCCTCCCGCTTGGTGACAA
GGCACTGGTAGTAAGCTGCCGCGTTCTGGATGAGCGATAGGTGCTTCGGA
TCCTGTTTGGTATGACTGAGGTACTCCAGCAGATC

protein sequence of EsuBft1133_14a-0001

>EsuBft1133_14 ID=EsuBft1133_14|Name=EsuBft1133_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=61bp
MQSTRHHQLVVAAAGFWQLLAVPGIKRVKKEELLGHSIAKHLYISTSTTS
IRKQVAAVDAE

mRNA from alignment at Scaffold_99:55115..56349+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1133_14a-0001 ID=EsuBft1133_14a-0001|Name=EsuBft1133_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1235bp|location=Sequence derived from alignment at Scaffold_99:55115..56349+ (Ectocarpus subulatus male Bft15b)
ATGCAAAGCACCCGTCACCACCAACTAGTAGTTGCAGCAGCGGGTTTTTG
GCAATTGCTGGCGGTGCCTGGAATAAAAAGAGTAAAAAAGGAAGAACTTC
TGGGCCATTCTATCGCGAAACATCTGTATATCTCGACGTCCACTACGTCG
ATTCGCAAGCAGGTTGCTGCAGTAGATGCGGAGTGAGCGAGATATCACCT
AGATCTGTCCGTCCTGTGAATGACTGCCCCCTTATGTCCACTCTTATTGC
TGTTTTGTAGGCATATCAACACAACACGCAAGCACGCACGCCAACAAGCC
GCTTCTCTTCCTGCCGTTAGCTACAGCAGCGACGGCGTCTTGCTTCGATG
TCCCACACTCCTCCTTCTGTGTGTGATGTGCTGGGTGCTCTGCATGCTAT
GTCTCTCGTGTATTGCCCAGAACGCAGGTGAAGTGTGCGCCTCTTGCGCC
CCTTGTCATTTGTGCCACAGTACCGGGCGGCCAAGTCCCGCCTGTACTTC
TAGTACAAAAAATTGCGCAACACGAGCGACGAGCGGGGCGCCGCCACTAA
AGCACGGCCTCTACCTACATAATCCGAATCCACTCGCCTGTCCCAGATTC
TGTTGAAGTCCCTCCTGATCTCACGGCCACACGATAGGTACTTGGACCAA
ACCAGACCGTCGGTGTTGGAGAGCCTTTTGGCTGCGGCAAAAGGCAGCGG
CATCGCGACCGCGGGGCAGAACACCGCATGCGTAGAAGGTGTGGATAAGA
TTTGTGTTCATCTCTCGTTGTACAGAAATATTTCCCACGAAACCCTTGGG
AGTATGTGTGCCCAAGGATTGTGCCCGACAAGTCTATTACAGCCATGATG
TACCAACAGCACGACTACGCACCGCAGCACCAGCGGGAGAGAGCGCCTAC
ACTATTGTACGACAGCAGTATTATTGCAGTTGTACAGCCAGCCTGTGCTT
TGTGCGTGTCTATCCCTTACCTGAATCGTTTCCGGTGGTCATGCCCATGA
GGTCTTGGGTCAGCCAACTCGGGGGGGTTTGAATGACCACGGTCTTCCAC
CAACACAGGAAGCTTGGAACGGTGAAGTTCTTGTAGTTGGTCCTGGCGTG
TGCATCCCTCTGTTGGGTTGACATGGTCCCGGCCTCCCGCTTGGTGACAA
GGCACTGGTAGTAAGCTGCCGCGTTCTGGATGAGCGATAGGTGCTTCGGA
TCCTGTTTGGTATGACTGAGGTACTCCAGCAGATC

Coding sequence (CDS) from alignment at Scaffold_99:55115..56349+

>EsuBft1133_14a-0001 ID=EsuBft1133_14a-0001|Name=EsuBft1133_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=186bp|location=Sequence derived from alignment at Scaffold_99:55115..56349+ (Ectocarpus subulatus male Bft15b)
ATGCAAAGCACCCGTCACCACCAACTAGTAGTTGCAGCAGCGGGTTTTTG
GCAATTGCTGGCGGTGCCTGGAATAAAAAGAGTAAAAAAGGAAGAACTTC
TGGGCCATTCTATCGCGAAACATCTGTATATCTCGACGTCCACTACGTCG
ATTCGCAAGCAGGTTGCTGCAGTAGATGCGGAGTGA