EsuBft1133_11a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1133_11a-0001
Unique NameEsuBft1133_11a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_99contigScaffold_99:78425..79341 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FTE5
ProteomeIdEsuBft1133_11
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsIPR006311
Protein domainsSignalP-noTM
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSignalP-TM
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSIGNAL_PEPTIDE
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2759|Eukaryota
Length68
Hectar predicted targeting categorysignal peptide
Evalue8.25e-123
EggNOG OGs2E0VG@1|root,2S88X@2759|Eukaryota
Ec32 ortholog descriptionS-adenosyl-L-methionine-dependent methyltransferase
Ec32 orthologEc-21_001050.1
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1133_11aEsuBft1133_11aEctocarpus subulatus male Bft15bgeneScaffold_99 78425..79341 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1133_11a-0001-exonagat-exon-105992Ectocarpus subulatus male Bft15bexonScaffold_99 78425..79035 +
EsuBft1133_11a-0001-exonEsuBft1133_11a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_99 79272..79341 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1133_11a-0001-cdsEsuBft1133_11a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_99 78425..79035 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1133_11a-0001EsuBft1133_11Ectocarpus subulatus male Bft15bpolypeptideScaffold_99 78425..79341 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1133_11a-0001 ID=EsuBft1133_11a-0001|Name=EsuBft1133_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=681bp|location=Sequence derived from alignment at Scaffold_99:78425..79341+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGGATCGCTCCGCAGGAGGGAGCCCAAACCAGCGCGGATCCATCTT
GCGGCGGAACCTGCTCCAGTTGTTGGGAGTAGCAGCAGCATCAGTGATAT
GTTGCAGTCGAGCACACGCCAACCCGGCTTCGAATGCCTTGAGCTACCCC
CCGGCAGTTCTGGTGTTCGAGAGCCCTTCGAATGGATCCGCAGCCGTTTA
TGGGACGAACATGAACTTTGCCTTCTCCCTGAGGTCAAGCCGGGAAGGGC
GCATATTGACCCACGAGGAGATCGAGGCACTCCGAGAGGATGGCGTTTCC
GTTTGCCTCGCCAAGAAAGGGGATCGGAGACCACCACTTTGTGCCTTGCT
GAGCACGGACACCACTCTCAGCCTTCACAAGCCGCTACCCGGCATGTGGC
ACACGATAGTGGCAACCCTCCATCACAAGGCTGCGACGAATGCCGGAGAT
GACTCGGACGAGGCTAGGGCCTGGGCCGAAGCCGGCGACAGCGTGTCAAC
GTATGCAGAAATCGAAGGGTTGTCATCTACATCCAGCGTGTCCATGTGCG
GCGAGAGTGCCTGCCTGGACAGCAGCGAGAAGCGCTCGGCATACTTCGAC
AATGTGTACAGGAGTGGAGCGGAGCAGGCCGTGGCGGCAGTTTTCGCGGT
CCGGGCAGGGCCAGCCCTCTACTCCCAGTGA
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protein sequence of EsuBft1133_11a-0001

>EsuBft1133_11 ID=EsuBft1133_11|Name=EsuBft1133_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=226bp
MTDRSAGGSPNQRGSILRRNLLQLLGVAAASVICCSRAHANPASNALSYP
PAVLVFESPSNGSAAVYGTNMNFAFSLRSSREGRILTHEEIEALREDGVS
VCLAKKGDRRPPLCALLSTDTTLSLHKPLPGMWHTIVATLHHKAATNAGD
DSDEARAWAEAGDSVSTYAEIEGLSSTSSVSMCGESACLDSSEKRSAYFD
NVYRSGAEQAVAAVFAVRAGPALYSQ
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mRNA from alignment at Scaffold_99:78425..79341+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1133_11a-0001 ID=EsuBft1133_11a-0001|Name=EsuBft1133_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=917bp|location=Sequence derived from alignment at Scaffold_99:78425..79341+ (Ectocarpus subulatus male Bft15b)
ATGACGGATCGCTCCGCAGGAGGGAGCCCAAACCAGCGCGGATCCATCTT
GCGGCGGAACCTGCTCCAGTTGTTGGGAGTAGCAGCAGCATCAGTGATAT
GTTGCAGTCGAGCACACGCCAACCCGGCTTCGAATGCCTTGAGCTACCCC
CCGGCAGTTCTGGTGTTCGAGAGCCCTTCGAATGGATCCGCAGCCGTTTA
TGGGACGAACATGAACTTTGCCTTCTCCCTGAGGTCAAGCCGGGAAGGGC
GCATATTGACCCACGAGGAGATCGAGGCACTCCGAGAGGATGGCGTTTCC
GTTTGCCTCGCCAAGAAAGGGGATCGGAGACCACCACTTTGTGCCTTGCT
GAGCACGGACACCACTCTCAGCCTTCACAAGCCGCTACCCGGCATGTGGC
ACACGATAGTGGCAACCCTCCATCACAAGGCTGCGACGAATGCCGGAGAT
GACTCGGACGAGGCTAGGGCCTGGGCCGAAGCCGGCGACAGCGTGTCAAC
GTATGCAGAAATCGAAGGGTTGTCATCTACATCCAGCGTGTCCATGTGCG
GCGAGAGTGCCTGCCTGGACAGCAGCGAGAAGCGCTCGGCATACTTCGAC
AATGTGTACAGGTATAATGATGGGCTTCGCTCAGATAACCGTGTTGATAA
CTCATGCAATTTCCCGCAACTATGTAGGATACTACAAGGGCTCGGACGCG
GGGGACTACCGCCCCCCCCGTCTTTTGTTTGCTCCGCCGCCCTTCGCGGA
GAGCGAAACGTAATGTGAGGTAGAAGAAAGCGCAAAACGTATACCAAGTG
GGACGTTCTTGAGTTGGTCGGATGTTGTTTAATTTACCCCAGAACAGGAG
TGGAGCGGAGCAGGCCGTGGCGGCAGTTTTCGCGGTCCGGGCAGGGCCAG
CCCTCTACTCCCAGTGA
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Coding sequence (CDS) from alignment at Scaffold_99:78425..79341+

>EsuBft1133_11a-0001 ID=EsuBft1133_11a-0001|Name=EsuBft1133_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=681bp|location=Sequence derived from alignment at Scaffold_99:78425..79341+ (Ectocarpus subulatus male Bft15b)
ATGACGGATCGCTCCGCAGGAGGGAGCCCAAACCAGCGCGGATCCATCTT
GCGGCGGAACCTGCTCCAGTTGTTGGGAGTAGCAGCAGCATCAGTGATAT
GTTGCAGTCGAGCACACGCCAACCCGGCTTCGAATGCCTTGAGCTACCCC
CCGGCAGTTCTGGTGTTCGAGAGCCCTTCGAATGGATCCGCAGCCGTTTA
TGGGACGAACATGAACTTTGCCTTCTCCCTGAGGTCAAGCCGGGAAGGGC
GCATATTGACCCACGAGGAGATCGAGGCACTCCGAGAGGATGGCGTTTCC
GTTTGCCTCGCCAAGAAAGGGGATCGGAGACCACCACTTTGTGCCTTGCT
GAGCACGGACACCACTCTCAGCCTTCACAAGCCGCTACCCGGCATGTGGC
ACACGATAGTGGCAACCCTCCATCACAAGGCTGCGACGAATGCCGGAGAT
GACTCGGACGAGGCTAGGGCCTGGGCCGAAGCCGGCGACAGCGTGTCAAC
GTATGCAGAAATCGAAGGGTTGTCATCTACATCCAGCGTGTCCATGTGCG
GCGAGAGTGCCTGCCTGGACAGCAGCGAGAAGCGCTCGGCATACTTCGAC
AATGTGTACAGGAGTGGAGCGGAGCAGGCCGTGGCGGCAGTTTTCGCGGT
CCGGGCAGGGCCAGCCCTCTACTCCCAGTGA
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