EsuBft1133_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1133_10a-0001
Unique NameEsuBft1133_10a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_99contigScaffold_99:80948..82131 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FTE5
ProteomeIdEsuBft1133_10
Protein domainsIPR029063
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2759|Eukaryota
Length85
Hectar predicted targeting categoryother localisation
Evalue2.07e-156
EggNOG OGs2E0VG@1|root,2S88X@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1133_10aEsuBft1133_10aEctocarpus subulatus male Bft15bgeneScaffold_99 80948..82131 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1133_10a-0001-exonagat-exon-105991Ectocarpus subulatus male Bft15bexonScaffold_99 80948..81474 +
EsuBft1133_10a-0001-exonEsuBft1133_10a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_99 81804..82131 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1133_10a-0001-cdsEsuBft1133_10a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_99 80948..81474 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1133_10a-0001EsuBft1133_10Ectocarpus subulatus male Bft15bpolypeptideScaffold_99 80948..82131 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1133_10a-0001 ID=EsuBft1133_10a-0001|Name=EsuBft1133_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=855bp|location=Sequence derived from alignment at Scaffold_99:80948..82131+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCACCACATCCAAAGCGCTCGAAGTTGGAAAATCGGCCCAAAATCGG
CAAACATCCCATCAAGACACCAAGCCTGCAGTATCTCACCGCCTCTCTGC
CGATATCACGTGCCACGTCCTTGCAATTGTTCTACTTGAGCAGAATGGAG
TATTGGGCCGAGACCCGGAGTGGGCCAGGTTCGACAGTGCACAACACGAA
CAGAATACGGCTAGCCTTGGAAGAGGTAATCCGTTCCAATGGGGTGACGA
GCATCCTCGACGCCCCCTGCGGAGACGCGACCTGGATGCCTCTTGTTCGT
GGTATCGATCAAGTCCGATACCTCGGAGTAGATATCTCCCCCAGCGTCGT
GGAAGACAATCGACGCAAGTTTTCCAAACTACAGGACCACAGTGGGGGGT
CGGGAGATGAAGCCGTGGCTTCGGCAAGCGCAGGAGGCTTACATGGGGCT
TCGTTTATCCAGGCCGATCTCGTTGAGCGGATACCACCCTCCATGGATGG
AAAGCCATACGACCTCATCTTCCTCAGGGACGTCATGCTCCACCTCGCCC
GTCAACACAACGTGCAGATGCTGCAGAACATAGAGGCTAGTGGTGCGCGA
TTCTTGATGGCGAGCACGAACGTTGACGGCAACGACAACTGGAAGGCTGA
TACCTTTCGGCCGGCGGACGGGCTCTTGGTAAATCTTTCTCTACCACCAT
ACTGCTTGCGGCCGCCGATTGCGCTCTACTCCGACGCGATCCCCGAACGA
CCGGGCCAGCGTATGGGGCTGTGGGAGTTGGATCCCGCCAGGCCGCTTGT
TGGTTCGAATGAGCTATGTGACCATATTTCCCCAGGTCCCCAGGAGCTAC
CCTAA
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protein sequence of EsuBft1133_10a-0001

>EsuBft1133_10 ID=EsuBft1133_10|Name=EsuBft1133_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=284bp
MPPHPKRSKLENRPKIGKHPIKTPSLQYLTASLPISRATSLQLFYLSRME
YWAETRSGPGSTVHNTNRIRLALEEVIRSNGVTSILDAPCGDATWMPLVR
GIDQVRYLGVDISPSVVEDNRRKFSKLQDHSGGSGDEAVASASAGGLHGA
SFIQADLVERIPPSMDGKPYDLIFLRDVMLHLARQHNVQMLQNIEASGAR
FLMASTNVDGNDNWKADTFRPADGLLVNLSLPPYCLRPPIALYSDAIPER
PGQRMGLWELDPARPLVGSNELCDHISPGPQELP
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mRNA from alignment at Scaffold_99:80948..82131+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1133_10a-0001 ID=EsuBft1133_10a-0001|Name=EsuBft1133_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1184bp|location=Sequence derived from alignment at Scaffold_99:80948..82131+ (Ectocarpus subulatus male Bft15b)
ATGCCACCACATCCAAAGCGCTCGAAGTTGGAAAATCGGCCCAAAATCGG
CAAACATCCCATCAAGACACCAAGCCTGCAGTATCTCACCGCCTCTCTGC
CGATATCACGTGCCACGTCCTTGCAATTGTTCTACTTGAGCAGAATGGAG
TATTGGGCCGAGACCCGGAGTGGGCCAGGTTCGACAGTGCACAACACGAA
CAGAATACGGCTAGCCTTGGAAGAGGTAATCCGTTCCAATGGGGTGACGA
GCATCCTCGACGCCCCCTGCGGAGACGCGACCTGGATGCCTCTTGTTCGT
GGTATCGATCAAGTCCGATACCTCGGAGTAGATATCTCCCCCAGCGTCGT
GGAAGACAATCGACGCAAGTTTTCCAAACTACAGGACCACAGTGGGGGGT
CGGGAGATGAAGCCGTGGCTTCGGCAAGCGCAGGAGGCTTACATGGGGCT
TCGTTTATCCAGGCCGATCTCGTTGAGCGGATACCACCCTCCATGGATGG
AAAGCCATACGACCTCATCTTCCTCAGGTCAGATGCTGAAGAACCGCGCC
TGTCTAGCGAAGCGTCGTTCGAGACATCGTCTACCGCAGTCCAATAACAG
GGCCCCTGCGGCCGTTTCGGGCTGTTGAGAGCGCTTCATTCAGCATTGAC
TGAAATTTATGTTGCCATGCCGTGGTGGTGTGGAACGTTTGCTACACACT
TTCATCGGTGTTCTTGAAGCCCACCATGCAGAGCCCAAGAGGAAGTAACG
ATTGTCTCACTTTTAAGGACCCCTTGGGCTGGCAACGCGGGCCGTCCATA
GCTGAACACGTCAATGCATGGTTTGTTGTTTATCTCTTTGCGTCGGTTTT
TGGCAGGGACGTCATGCTCCACCTCGCCCGTCAACACAACGTGCAGATGC
TGCAGAACATAGAGGCTAGTGGTGCGCGATTCTTGATGGCGAGCACGAAC
GTTGACGGCAACGACAACTGGAAGGCTGATACCTTTCGGCCGGCGGACGG
GCTCTTGGTAAATCTTTCTCTACCACCATACTGCTTGCGGCCGCCGATTG
CGCTCTACTCCGACGCGATCCCCGAACGACCGGGCCAGCGTATGGGGCTG
TGGGAGTTGGATCCCGCCAGGCCGCTTGTTGGTTCGAATGAGCTATGTGA
CCATATTTCCCCAGGTCCCCAGGAGCTACCCTAA
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Coding sequence (CDS) from alignment at Scaffold_99:80948..82131+

>EsuBft1133_10a-0001 ID=EsuBft1133_10a-0001|Name=EsuBft1133_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=855bp|location=Sequence derived from alignment at Scaffold_99:80948..82131+ (Ectocarpus subulatus male Bft15b)
ATGCCACCACATCCAAAGCGCTCGAAGTTGGAAAATCGGCCCAAAATCGG
CAAACATCCCATCAAGACACCAAGCCTGCAGTATCTCACCGCCTCTCTGC
CGATATCACGTGCCACGTCCTTGCAATTGTTCTACTTGAGCAGAATGGAG
TATTGGGCCGAGACCCGGAGTGGGCCAGGTTCGACAGTGCACAACACGAA
CAGAATACGGCTAGCCTTGGAAGAGGTAATCCGTTCCAATGGGGTGACGA
GCATCCTCGACGCCCCCTGCGGAGACGCGACCTGGATGCCTCTTGTTCGT
GGTATCGATCAAGTCCGATACCTCGGAGTAGATATCTCCCCCAGCGTCGT
GGAAGACAATCGACGCAAGTTTTCCAAACTACAGGACCACAGTGGGGGGT
CGGGAGATGAAGCCGTGGCTTCGGCAAGCGCAGGAGGCTTACATGGGGCT
TCGTTTATCCAGGCCGATCTCGTTGAGCGGATACCACCCTCCATGGATGG
AAAGCCATACGACCTCATCTTCCTCAGGGACGTCATGCTCCACCTCGCCC
GTCAACACAACGTGCAGATGCTGCAGAACATAGAGGCTAGTGGTGCGCGA
TTCTTGATGGCGAGCACGAACGTTGACGGCAACGACAACTGGAAGGCTGA
TACCTTTCGGCCGGCGGACGGGCTCTTGGTAAATCTTTCTCTACCACCAT
ACTGCTTGCGGCCGCCGATTGCGCTCTACTCCGACGCGATCCCCGAACGA
CCGGGCCAGCGTATGGGGCTGTGGGAGTTGGATCCCGCCAGGCCGCTTGT
TGGTTCGAATGAGCTATGTGACCATATTTCCCCAGGTCCCCAGGAGCTAC
CCTAA
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