EsuBft1132_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1132_8a-0001
Unique NameEsuBft1132_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_86contigScaffold_86:30167..30805 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1132_8
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length63
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1132_8aEsuBft1132_8aEctocarpus subulatus male Bft15bgeneScaffold_86 30167..30805 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1132_8a-0001-exonEsuBft1132_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_86 30167..30805 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1132_8a-0001-cdsEsuBft1132_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_86 30167..30790 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1132_8a-0001-exonagat-five_prime_utr-808Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_86 30791..30805 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1132_8a-0001EsuBft1132_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_86 30167..30790 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1132_8a-0001 ID=EsuBft1132_8a-0001|Name=EsuBft1132_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=639bp|location=Sequence derived from alignment at Scaffold_86:30167..30805- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTTCCATTTTTCAACATGGGCAACAAGAACAAGAGAGACAACAAAGCCGG
CTCGAACTCGCAGGCAGGCACGGACGCCGGTAACGGCGCTCTTAAGACCC
CCTCGCACAACCCCAAACCCAGTCCTCCGCTGCAGTCTACACAGCAGTCT
GTCAAGAAACCGTCCACCAACGGTAAACAGCCCCAGCGGCTTGCCACCGG
TGACGCTTCTCCCAGCTCTAAAGACTACGCTGGCGCCGCCCGCAACGGAA
CTGGGAAGGGTGGCAGCTCCAGCAATGGAGGTGGCAGCTCCAACAGTGGT
GGGGGTGACCCCAGCAACCGCTTCGCAGCACTGGGAGAAGAGAACTCACC
CAGCAAGGCCGGCGGTCGCGAGGAAGGAGAGATCCCTCCGGACGACCCCA
CACGCGCACTGGCTGCAGACGTTCTCGCGAATCTCCAACAAGCAGCCACC
ACTGCTGCTCCCTCCATTCCTGCCCCTGCTGGGAACTTCTTGGCGCCCTT
CATCATCTCAAGCTTGAAGCAGGCGCGTGACAACAAGGAGGAACCGGAAC
CTTGGATCATGCGCCTAGTCCTGGGAGCTCCCGTGCAAGACGCGACACTC
ACTCAGGTGAAACCAACCAACTACCAGTTAAACATCTAA
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protein sequence of EsuBft1132_8a-0001

>EsuBft1132_8 ID=EsuBft1132_8|Name=EsuBft1132_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=207bp
MGNKNKRDNKAGSNSQAGTDAGNGALKTPSHNPKPSPPLQSTQQSVKKPS
TNGKQPQRLATGDASPSSKDYAGAARNGTGKGGSSSNGGGSSNSGGGDPS
NRFAALGEENSPSKAGGREEGEIPPDDPTRALAADVLANLQQAATTAAPS
IPAPAGNFLAPFIISSLKQARDNKEEPEPWIMRLVLGAPVQDATLTQVKP
TNYQLNI
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mRNA from alignment at Scaffold_86:30167..30805-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1132_8a-0001 ID=EsuBft1132_8a-0001|Name=EsuBft1132_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=639bp|location=Sequence derived from alignment at Scaffold_86:30167..30805- (Ectocarpus subulatus male Bft15b)
GTTCCATTTTTCAACATGGGCAACAAGAACAAGAGAGACAACAAAGCCGG
CTCGAACTCGCAGGCAGGCACGGACGCCGGTAACGGCGCTCTTAAGACCC
CCTCGCACAACCCCAAACCCAGTCCTCCGCTGCAGTCTACACAGCAGTCT
GTCAAGAAACCGTCCACCAACGGTAAACAGCCCCAGCGGCTTGCCACCGG
TGACGCTTCTCCCAGCTCTAAAGACTACGCTGGCGCCGCCCGCAACGGAA
CTGGGAAGGGTGGCAGCTCCAGCAATGGAGGTGGCAGCTCCAACAGTGGT
GGGGGTGACCCCAGCAACCGCTTCGCAGCACTGGGAGAAGAGAACTCACC
CAGCAAGGCCGGCGGTCGCGAGGAAGGAGAGATCCCTCCGGACGACCCCA
CACGCGCACTGGCTGCAGACGTTCTCGCGAATCTCCAACAAGCAGCCACC
ACTGCTGCTCCCTCCATTCCTGCCCCTGCTGGGAACTTCTTGGCGCCCTT
CATCATCTCAAGCTTGAAGCAGGCGCGTGACAACAAGGAGGAACCGGAAC
CTTGGATCATGCGCCTAGTCCTGGGAGCTCCCGTGCAAGACGCGACACTC
ACTCAGGTGAAACCAACCAACTACCAGTTAAACATCTAA
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Coding sequence (CDS) from alignment at Scaffold_86:30167..30805-

>EsuBft1132_8a-0001 ID=EsuBft1132_8a-0001|Name=EsuBft1132_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=624bp|location=Sequence derived from alignment at Scaffold_86:30167..30805- (Ectocarpus subulatus male Bft15b)
ATGGGCAACAAGAACAAGAGAGACAACAAAGCCGGCTCGAACTCGCAGGC
AGGCACGGACGCCGGTAACGGCGCTCTTAAGACCCCCTCGCACAACCCCA
AACCCAGTCCTCCGCTGCAGTCTACACAGCAGTCTGTCAAGAAACCGTCC
ACCAACGGTAAACAGCCCCAGCGGCTTGCCACCGGTGACGCTTCTCCCAG
CTCTAAAGACTACGCTGGCGCCGCCCGCAACGGAACTGGGAAGGGTGGCA
GCTCCAGCAATGGAGGTGGCAGCTCCAACAGTGGTGGGGGTGACCCCAGC
AACCGCTTCGCAGCACTGGGAGAAGAGAACTCACCCAGCAAGGCCGGCGG
TCGCGAGGAAGGAGAGATCCCTCCGGACGACCCCACACGCGCACTGGCTG
CAGACGTTCTCGCGAATCTCCAACAAGCAGCCACCACTGCTGCTCCCTCC
ATTCCTGCCCCTGCTGGGAACTTCTTGGCGCCCTTCATCATCTCAAGCTT
GAAGCAGGCGCGTGACAACAAGGAGGAACCGGAACCTTGGATCATGCGCC
TAGTCCTGGGAGCTCCCGTGCAAGACGCGACACTCACTCAGGTGAAACCA
ACCAACTACCAGTTAAACATCTAA
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