EsuBft1132_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1132_5a-0001
Unique NameEsuBft1132_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_86contigScaffold_86:51857..54583 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog4792.ETI53028
ProteomeIdEsuBft1132_5
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsCoil
Protein domainsTRANSMEMBRANE
Protein domainsPTHR22930
Protein domainsIPR027806
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Max annot lvl4776|Peronosporales
Length135
Hectar predicted targeting categoryother localisation
Evalue2.52e-37
EggNOG OGsKOG4585@1|root,KOG4585@2759|Eukaryota,3QI3U@4776|Peronosporales
Date last modified2016-06-14
Date creation2016-06-14
Descriptionnuclease activity
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1132_5aEsuBft1132_5aEctocarpus subulatus male Bft15bgeneScaffold_86 51857..54583 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1132_5a-0001EsuBft1132_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_86 52033..54583 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1132_5a-0001-exonagat-exon-96175Ectocarpus subulatus male Bft15bexonScaffold_86 51857..52149 +
EsuBft1132_5a-0001-exonagat-exon-96176Ectocarpus subulatus male Bft15bexonScaffold_86 52217..52382 +
EsuBft1132_5a-0001-exonagat-exon-96174Ectocarpus subulatus male Bft15bexonScaffold_86 53089..53249 +
EsuBft1132_5a-0001-exonEsuBft1132_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_86 53849..54583 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1132_5a-0001-exonagat-five_prime_utr-803Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_86 51857..52032 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1132_5a-0001-cdsEsuBft1132_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_86 52033..52149 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1132_5a-0001 ID=EsuBft1132_5a-0001|Name=EsuBft1132_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1355bp|location=Sequence derived from alignment at Scaffold_86:51857..54583+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGAAAAGAGGCAGCCGGGATTTTTTGGGGCTTGCTCCTTTCACGGTTCCG
GGGAAAAACGCCCCGCTTTTTCCGGGCAGCCGAAGCAGACACCGGTCACG
CGTGCTGCCTTCATCACACCACACCTAGACAGCACCCACAACACCCCAAA
AAGCTTCCCACGGCAAGTCGACCACCATGGCTGAGCGCGGGAAGCGCCAG
GATCCCACAGACCCCGCAGCGCAACGCCGGGAGAAGCGCCGTCGACGAGC
TATCGACGAGGAGAATGCAGCCCAGGAAGACAAGAGATTCACGGAACGGG
AGCCCATCTACGAGCCCAAGCGACTTCCTTGGGCCCAACACGAGGCGGAC
CTCGATAAACGGCGCGGCTGGCGGCGGTCGTACCGCATGGAGAAAGGCAG
TTTCCACAAGCTCGTCGAGCTACTCCGCCCTTCGCTGGAAGTCAACGCCT
TCTTCGGCGTTACTGGGATGGATGTCCTAGTCATGTTTGGCTTGTCGGTG
GCGGTCACATACCAGATCTTGTGGGAGGTGATCGATGCCATCAACAACAC
GCCTGCGGTTGGGGCATTTGACTTCCCCCTGACCGAGGAAGGCTGTATGC
GAAACGCCAACAGATTCAAGGACAAGAGCACCGATGGCATTTTTTCGTGG
GTCGTCGCCGCCGTGGATGGTCTGTTCATCAAGGCCGAGGCTCCGCGTGC
GAAAGAGACCAAAAATGTCATCGCGTACTACCCTGGCAGCAAGTCCGCGT
ACGGCATCAACGTGCAAGCGATGTGCACCGCCGACTACCGGTTCTGCGCA
ATGTCGGCGATCTCTCCAGGCTCGACGAACGACTGGGTGGCATGGACTCG
ATCTTCCCTCGCCAAGGCCGTCGCCCGCTTGCCCGCCGGATTTCACATCA
TTGGTGACGCCGCCTACCCCATCGGAGAAAAGCTTCTAACTCCGTACCCT
GGGAGGCAACTGCCGGCGGGCGAGGACTCGTTCAACTTCCACCTGAGCCA
GCTTCGTGTTAAGATCGAGCAGAGCTTCGGCATCCTGGTTTCGACTTGGG
GCATTCTGTGGAGACCTCTCCGCGTGCAGCTCGGAGGACGCGCGGATCTC
ATCACAGCTCTTTTTCATCTGCACAACTTCCTGCAAGACGAGAAGGTAGC
GCCGATCCAGCTTTCAGAGGAGGACTCCCGCAGCGGACTCAACCGGCCGG
CCCTCTGTGCCACCCAGCGCACCTTGCCGGATGGCTGGGGAACGGAGCCG
GCTCCTTCGAGGAGCGGTGAGACCCCGGCCCGAGCGGCTATCCGCAAGGC
CCTGGAGTTAAAGAAGCAGTGGAGGCCGGACTACAACCACCAGAGGAATT
CGTAA
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protein sequence of EsuBft1132_5a-0001

>EsuBft1132_5 ID=EsuBft1132_5|Name=EsuBft1132_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=392bp
MAERGKRQDPTDPAAQRREKRRRRAIDEENAAQEDKRFTEREPIYEPKRL
PWAQHEADLDKRRGWRRSYRMEKGSFHKLVELLRPSLEVNAFFGVTGMDV
LVMFGLSVAVTYQILWEVIDAINNTPAVGAFDFPLTEEGCMRNANRFKDK
STDGIFSWVVAAVDGLFIKAEAPRAKETKNVIAYYPGSKSAYGINVQAMC
TADYRFCAMSAISPGSTNDWVAWTRSSLAKAVARLPAGFHIIGDAAYPIG
EKLLTPYPGRQLPAGEDSFNFHLSQLRVKIEQSFGILVSTWGILWRPLRV
QLGGRADLITALFHLHNFLQDEKVAPIQLSEEDSRSGLNRPALCATQRTL
PDGWGTEPAPSRSGETPARAAIRKALELKKQWRPDYNHQRNS
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mRNA from alignment at Scaffold_86:51857..54583+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1132_5a-0001 ID=EsuBft1132_5a-0001|Name=EsuBft1132_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2727bp|location=Sequence derived from alignment at Scaffold_86:51857..54583+ (Ectocarpus subulatus male Bft15b)
TGAAAAGAGGCAGCCGGGATTTTTTGGGGCTTGCTCCTTTCACGGTTCCG
GGGAAAAACGCCCCGCTTTTTCCGGGCAGCCGAAGCAGACACCGGTCACG
CGTGCTGCCTTCATCACACCACACCTAGACAGCACCCACAACACCCCAAA
AAGCTTCCCACGGCAAGTCGACCACCATGGCTGAGCGCGGGAAGCGCCAG
GATCCCACAGACCCCGCAGCGCAACGCCGGGAGAAGCGCCGTCGACGAGC
TATCGACGAGGAGAATGCAGCCCAGGAAGACAAGAGATTCACGGTCCTGG
GTCTTAGTGGCGGCGGGCGTCGTGGCAGCAGGAGAAGCTCATCGTGCCCA
CTACCCTCAGGAACGGGAGCCCATCTACGAGCCCAAGCGACTTCCTTGGG
CCCAACACGAGGCGGACCTCGATAAACGGCGCGGCTGGCGGCGGTCGTAC
CGCATGGAGAAAGGCAGTTTCCACAAGCTCGTCGAGCTACTCCGCCCTTC
GCTGGAAGTCAACGCCTTCTTCGGCGGTGAGTGTTGATGCGTAGATGCAG
CCGCCCACGACACGTATGCGTAAGGCTCTCTCTGGTGTATAGATATGTAG
AACCGGGGACGAGCAACTCAAAACCAAGGGAGAAACGATATTACAGCTGT
AGAATACTGTACTGCTGTATGTTCCTGCTGTCTTTTTCAAAAATCAAAAC
TAGCTCGTCGAAGTAGCAGTACATGCAGGAACATACAGCAGTGCCGCAGC
ATATCTCGTCTACAGTACTGCTGTAGTATGCATATTGTACAGCAGTGCGA
CGCTGACTACCGTACAGCAGTAATAGTTAATCACAATACACGCCGGCACC
ACTAAAGCAAAATACGTGCCTCGTCGGGAGCCAATGCAGAATGCCGTATC
CCCCGCAATGATACAACAGCATTCGACACTGCTCCTCATGGGCAAGATAT
CGTGTGTGTAGTAGGTGATTAACACAGAGCCGTCTCAGAACTGTAGTCGG
GAGGTGGACTGGGCCGGCAATCTGACGGGTTTGTCGAGAACATGCGTCCC
CCGTCATAGGTTGCTAATTAGGTGCTGGCGATTGAAAACATACCACCTCT
GACACTCGTATGACCTGCAAAAATTATCTGCGCGTCGCTCTGAAACCCCA
CAGCACTGCGATCGCCACGCAACGGCGCCATATCTGTGGAAGTTCGCGTT
GCCGTGGCGTTGAGGATTCTGGCTGGCGCCAGTTACTGGGATGGATGTCC
TAGTCATGTTTGGCTTGTCGGTGGCGGTCACATACCAGATCTTGTGGGAG
GTGATCGATGCCATCAACAACACGCCTGCGGTTGGGGCATTTGACTTCCC
CCTGACCGAGGAAGGCTGTATGCGAAACGCCAACAGATTCAAGGTGAGGC
GTAGCGGTGGTCAGTACTGCTGCTGTGAGGGTCGTTCTTGGCGGCATTTT
TTCGACCAACCGCGCGATATCGTTCTTTTTTGTTTTGTACGACTGGCGTT
TCCAGCCGTTTTATCCGTGGAATGAGGCCCATCTATAGTACGCGGCCCCC
GTCGGTAAAATGCGGGTACAAGTTCGGATTGTCGTCGTTGTCAGCATGCT
TCGAATCGAAAAACACCCCCGGGATCCCAGGTGGTTCGCCAGCTTTTGGC
ATCCTTTTTCAAATAGGTGTTACTATACTGTCATCAATTGTGGATGCTGA
CCATGTTGGTTCGGCCCCGCAACAGCTTTCTGCGAGACAAGAGTGTGGAA
TCAATGTACTGCAGTCCCCTTCGTCTCTAAGATGCCCTGGTACCTTTTTA
CCGCTGTACCTGACGCGACATTAGCATCAGCAAACAACATCAAGTCTCAG
CTTACACGGTATGCGCTCCGTTCGATGCTAGTGATGGCGCCGTCGCTGAT
GACACCAACCCACACGACGTATCTCTCGACTTATTATTTTGTCTCTCCCG
GTACTACTTTCCCGCCGTCGTGTCTGCCGTCTACAAATGCAGGACAAGAG
CACCGATGGCATTTTTTCGTGGGTCGTCGCCGCCGTGGATGGTCTGTTCA
TCAAGGCCGAGGCTCCGCGTGCGAAAGAGACCAAAAATGTCATCGCGTAC
TACCCTGGCAGCAAGTCCGCGTACGGCATCAACGTGCAAGCGATGTGCAC
CGCCGACTACCGGTTCTGCGCAATGTCGGCGATCTCTCCAGGCTCGACGA
ACGACTGGGTGGCATGGACTCGATCTTCCCTCGCCAAGGCCGTCGCCCGC
TTGCCCGCCGGATTTCACATCATTGGTGACGCCGCCTACCCCATCGGAGA
AAAGCTTCTAACTCCGTACCCTGGGAGGCAACTGCCGGCGGGCGAGGACT
CGTTCAACTTCCACCTGAGCCAGCTTCGTGTTAAGATCGAGCAGAGCTTC
GGCATCCTGGTTTCGACTTGGGGCATTCTGTGGAGACCTCTCCGCGTGCA
GCTCGGAGGACGCGCGGATCTCATCACAGCTCTTTTTCATCTGCACAACT
TCCTGCAAGACGAGAAGGTAGCGCCGATCCAGCTTTCAGAGGAGGACTCC
CGCAGCGGACTCAACCGGCCGGCCCTCTGTGCCACCCAGCGCACCTTGCC
GGATGGCTGGGGAACGGAGCCGGCTCCTTCGAGGAGCGGTGAGACCCCGG
CCCGAGCGGCTATCCGCAAGGCCCTGGAGTTAAAGAAGCAGTGGAGGCCG
GACTACAACCACCAGAGGAATTCGTAA
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Coding sequence (CDS) from alignment at Scaffold_86:51857..54583+

>EsuBft1132_5a-0001 ID=EsuBft1132_5a-0001|Name=EsuBft1132_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1179bp|location=Sequence derived from alignment at Scaffold_86:51857..54583+ (Ectocarpus subulatus male Bft15b)
ATGGCTGAGCGCGGGAAGCGCCAGGATCCCACAGACCCCGCAGCGCAACG
CCGGGAGAAGCGCCGTCGACGAGCTATCGACGAGGAGAATGCAGCCCAGG
AAGACAAGAGATTCACGGAACGGGAGCCCATCTACGAGCCCAAGCGACTT
CCTTGGGCCCAACACGAGGCGGACCTCGATAAACGGCGCGGCTGGCGGCG
GTCGTACCGCATGGAGAAAGGCAGTTTCCACAAGCTCGTCGAGCTACTCC
GCCCTTCGCTGGAAGTCAACGCCTTCTTCGGCGTTACTGGGATGGATGTC
CTAGTCATGTTTGGCTTGTCGGTGGCGGTCACATACCAGATCTTGTGGGA
GGTGATCGATGCCATCAACAACACGCCTGCGGTTGGGGCATTTGACTTCC
CCCTGACCGAGGAAGGCTGTATGCGAAACGCCAACAGATTCAAGGACAAG
AGCACCGATGGCATTTTTTCGTGGGTCGTCGCCGCCGTGGATGGTCTGTT
CATCAAGGCCGAGGCTCCGCGTGCGAAAGAGACCAAAAATGTCATCGCGT
ACTACCCTGGCAGCAAGTCCGCGTACGGCATCAACGTGCAAGCGATGTGC
ACCGCCGACTACCGGTTCTGCGCAATGTCGGCGATCTCTCCAGGCTCGAC
GAACGACTGGGTGGCATGGACTCGATCTTCCCTCGCCAAGGCCGTCGCCC
GCTTGCCCGCCGGATTTCACATCATTGGTGACGCCGCCTACCCCATCGGA
GAAAAGCTTCTAACTCCGTACCCTGGGAGGCAACTGCCGGCGGGCGAGGA
CTCGTTCAACTTCCACCTGAGCCAGCTTCGTGTTAAGATCGAGCAGAGCT
TCGGCATCCTGGTTTCGACTTGGGGCATTCTGTGGAGACCTCTCCGCGTG
CAGCTCGGAGGACGCGCGGATCTCATCACAGCTCTTTTTCATCTGCACAA
CTTCCTGCAAGACGAGAAGGTAGCGCCGATCCAGCTTTCAGAGGAGGACT
CCCGCAGCGGACTCAACCGGCCGGCCCTCTGTGCCACCCAGCGCACCTTG
CCGGATGGCTGGGGAACGGAGCCGGCTCCTTCGAGGAGCGGTGAGACCCC
GGCCCGAGCGGCTATCCGCAAGGCCCTGGAGTTAAAGAAGCAGTGGAGGC
CGGACTACAACCACCAGAGGAATTCGTAA
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