EsuBft1132_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1132_3a-0001
Unique Name	EsuBft1132_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_86	contig	Scaffold_86:59295..63241 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1132_3
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	394
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1132_3a	EsuBft1132_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_86 59295..63241 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1132_3a-0001-exon	EsuBft1132_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_86 59295..63241 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1132_3a-0001-exon	agat-three_prime_utr-1258	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_86 59295..63091 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1132_3a-0001-cds	EsuBft1132_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_86 63092..63241 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1132_3a-0001	EsuBft1132_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_86 63092..63241 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_86:59295..63241-
coding sequence from alignment at Scaffold_86:59295..63241-

spliced messenger RNA

>EsuBft1132_3a-0001 ID=EsuBft1132_3a-0001|Name=EsuBft1132_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3947bp|location=Sequence derived from alignment at Scaffold_86:59295..63241- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCCCGCGAACAGTAGGCGTCGTTGTCGGATCGTGNNNNNNNNNNNN
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CCACGTCGCTGAGTTCCAGTTGCCCCTCATCGCCCGGCGCGCTTCCCGAC
GTTTGGTAAGGGCCTGCTCCAGCGCTGCTCGCGTCTCTGGGGTCTCACAC
TACTCCTGCGTGCGGTGTCTCCGCGGTTCCTCCCCCAGGGTCGTCCGCGC
TGCGTCGAGGAGAGGATTGGTAAAGTCGGTCGCCAATTCCGCGGCGGTGG
TTGTTCGCTCGTCCAGTCGTGTGTCGAGGTTGAGGGGGAACCGATTAGTC
ACCGCTCACCGCGCTGCTTCGAACTACCATTCCCGACGGTTGAATTGCTT
CTGTTTCGGTTTAGTCCGGACTGCACGGTTGTGGGCAAGCCTGGCACCGA
GGTTGACGGTGGCTACTACCATATTGTGGTTTGAGTCTGTTTTGACTGGG
CGAACCGGCTGGGGGATGGCGACCACGTTAGATACTCGGCCGTGATGTGC
CTGCCTTGTCAGGATGTAGTCAAGGCGCTTGCAATCGTTTCCCGACACAC
CGTTGTATGTGGGCCATATTCCGCCCTTGCGTGTCTCAAAGAACGTGTTC
GTGAGAGCTAGCCTGTTTTCCGTTGCGAAGTTCAACAGTAGCATGCCATT
GTCGTTGAGCTCATCACGCCCGTACATTCCTATTACCCTTCCGTCCCCTG
CGTCCAACCTATCTCCCGTCCGCGCGTTGGCGTCCAGTAGGACATACACA
CATTCTTTGGAAGGGATCCTCCGCACGAGACTGTCAAGTTTTCCCCAGAA
CACGCGCTTGCTGTCGGCGGTTGAAGGTTCGGTTGGAGCACACGCGGCTA
CGAAGAAGTTGACCGCTCCACGGTGGCCTGCCAACAGAAACCTCATGGCC
ACAAGGCGTTCGTCAATAAACTCCGTAGTGAACGTGGATGTCTTGCACAG
TGACTCTTTGACGGCTATCCCCACACCATGGACTCCACCAGTCTCCGTGC
CACAGCAGAACACCCGATAACCCGCTGCTGCAAAATTCGGTTCGACCTGC
CCTCCGTGTCTCCTGCATTCCTACCACCGATACGTCTTGTCTCGATGCCT
CGTGTAGAACGCTGTAAGCTCGCCCGTATCCATTGGCCCCGTTTACAGCC
AAAGTCCGCACATTCCAGGTTGCTACCCTAAGAAGTTGCCCCTGCTGGCT
CTTTCGCGCGGCGCGTGCTGCTCTCTTAGCTAGCCTACGCGACGCCCGAC
CCCTCCCGTTCCTCCATCTTACCCTCTTTTTTGTTTTTTTACTATTTTCT
TGCGAACACTCGGGCTAACGTGACAGCAGTTATCCCGGTTCTTGCCTATT
TCCCATAGACTTTTCTTGTCCCGGAACGGTGTGGCCCTCCATCTCTGGAC
TCTCTCCTTTCCTCTCTCTGGGGCATACGCCCACGGCGTGCGGCCACTCC
GCCACCCTCACCGTGCTCTCTGCTGCTGCATAGCCCCGGTGTCCAAGCCG
GGGCGTCAGGGTCCAGTCTCATTTTACACCTACCAAAGCTGGCGGCTAAG
GAGCTACTCGGGAAATCATGAAAACATAGGTAGCCGTCACTGACGCCATG
GATTCATATATATCTCCTCCCCGGCCTGCCCCCCCCGTCCGTGGGGTAGG
CCGAGGTTCCGCAAATGGATCTAGACCTCGGAAGACCACCCAGCAAAGAC
GGATATTCGGTCCCTAGCACTGTTGAGATGGGGATCCTGAGTTTGGCGGT
TGGGAGTTACTGCTGTCGTGAGATCGCGGTAGCTCGTGAGGGTGGTTCTT
ATCGATCCGTTTTCTTTTTCACCGATTCGTAACTTTTAACACGGAACCGG
TTCCGGGTTTTCCATTGGTTCTAATCGCAGAGGCGCGCCTTTTTTTCAAA
ATCCCGGAAAGCGTCGATGCCGACGTACACACACTGGTCACGACCAGGCG
AGAGGCCCGAGGCATACCACAGCAGACGCGATGAACCCACACCATGAACA
ACAACGCCGTAGCAGCGGCAGGTCAGCCATCTAGAGCGAAATCGTTGCCT
CTGAGACTGCAGGATGCAGGTGAAAGTGGTGCTGCTGCTGGGCATGGGGT
CGCCCAGACCGCGCCTGCTGGCGCGGCACAGCGGGCACCGAGCGGCATGG
CCCGCCAGGCCGTTCACAGCAGGGTTACCCCCCATACCGGTACACAACAG
GGGGTTCCACCTGGCGCGGTGATGATGCCGGGCTTCTCGGACGACGCTGA
TCGGCAAGCTCGTCAGGCAACCTTAGTAACGGTTATCAACGACAAGCGAT
TTGGCGACGCCCCACAAAAAAATTGGACCGAGTAGGAGAGCGGCGACGAT
GACGACGAGGAGGGGGGCAGCCCGACGTCAAGTGGCAGCAGCAATGTGTC
GGTAGAGGACAGTTTAGCCCCGTCGGACATTGGCTCACAGTCGGGAG

protein sequence of EsuBft1132_3a-0001

>EsuBft1132_3 ID=EsuBft1132_3|Name=EsuBft1132_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=50bp
MLPRTVGVVVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX

mRNA from alignment at Scaffold_86:59295..63241-

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1132_3a-0001 ID=EsuBft1132_3a-0001|Name=EsuBft1132_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3947bp|location=Sequence derived from alignment at Scaffold_86:59295..63241- (Ectocarpus subulatus male Bft15b)
ATGCTCCCGCGAACAGTAGGCGTCGTTGTCGGATCGTGNNNNNNNNNNNN
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CCACGTCGCTGAGTTCCAGTTGCCCCTCATCGCCCGGCGCGCTTCCCGAC
GTTTGGTAAGGGCCTGCTCCAGCGCTGCTCGCGTCTCTGGGGTCTCACAC
TACTCCTGCGTGCGGTGTCTCCGCGGTTCCTCCCCCAGGGTCGTCCGCGC
TGCGTCGAGGAGAGGATTGGTAAAGTCGGTCGCCAATTCCGCGGCGGTGG
TTGTTCGCTCGTCCAGTCGTGTGTCGAGGTTGAGGGGGAACCGATTAGTC
ACCGCTCACCGCGCTGCTTCGAACTACCATTCCCGACGGTTGAATTGCTT
CTGTTTCGGTTTAGTCCGGACTGCACGGTTGTGGGCAAGCCTGGCACCGA
GGTTGACGGTGGCTACTACCATATTGTGGTTTGAGTCTGTTTTGACTGGG
CGAACCGGCTGGGGGATGGCGACCACGTTAGATACTCGGCCGTGATGTGC
CTGCCTTGTCAGGATGTAGTCAAGGCGCTTGCAATCGTTTCCCGACACAC
CGTTGTATGTGGGCCATATTCCGCCCTTGCGTGTCTCAAAGAACGTGTTC
GTGAGAGCTAGCCTGTTTTCCGTTGCGAAGTTCAACAGTAGCATGCCATT
GTCGTTGAGCTCATCACGCCCGTACATTCCTATTACCCTTCCGTCCCCTG
CGTCCAACCTATCTCCCGTCCGCGCGTTGGCGTCCAGTAGGACATACACA
CATTCTTTGGAAGGGATCCTCCGCACGAGACTGTCAAGTTTTCCCCAGAA
CACGCGCTTGCTGTCGGCGGTTGAAGGTTCGGTTGGAGCACACGCGGCTA
CGAAGAAGTTGACCGCTCCACGGTGGCCTGCCAACAGAAACCTCATGGCC
ACAAGGCGTTCGTCAATAAACTCCGTAGTGAACGTGGATGTCTTGCACAG
TGACTCTTTGACGGCTATCCCCACACCATGGACTCCACCAGTCTCCGTGC
CACAGCAGAACACCCGATAACCCGCTGCTGCAAAATTCGGTTCGACCTGC
CCTCCGTGTCTCCTGCATTCCTACCACCGATACGTCTTGTCTCGATGCCT
CGTGTAGAACGCTGTAAGCTCGCCCGTATCCATTGGCCCCGTTTACAGCC
AAAGTCCGCACATTCCAGGTTGCTACCCTAAGAAGTTGCCCCTGCTGGCT
CTTTCGCGCGGCGCGTGCTGCTCTCTTAGCTAGCCTACGCGACGCCCGAC
CCCTCCCGTTCCTCCATCTTACCCTCTTTTTTGTTTTTTTACTATTTTCT
TGCGAACACTCGGGCTAACGTGACAGCAGTTATCCCGGTTCTTGCCTATT
TCCCATAGACTTTTCTTGTCCCGGAACGGTGTGGCCCTCCATCTCTGGAC
TCTCTCCTTTCCTCTCTCTGGGGCATACGCCCACGGCGTGCGGCCACTCC
GCCACCCTCACCGTGCTCTCTGCTGCTGCATAGCCCCGGTGTCCAAGCCG
GGGCGTCAGGGTCCAGTCTCATTTTACACCTACCAAAGCTGGCGGCTAAG
GAGCTACTCGGGAAATCATGAAAACATAGGTAGCCGTCACTGACGCCATG
GATTCATATATATCTCCTCCCCGGCCTGCCCCCCCCGTCCGTGGGGTAGG
CCGAGGTTCCGCAAATGGATCTAGACCTCGGAAGACCACCCAGCAAAGAC
GGATATTCGGTCCCTAGCACTGTTGAGATGGGGATCCTGAGTTTGGCGGT
TGGGAGTTACTGCTGTCGTGAGATCGCGGTAGCTCGTGAGGGTGGTTCTT
ATCGATCCGTTTTCTTTTTCACCGATTCGTAACTTTTAACACGGAACCGG
TTCCGGGTTTTCCATTGGTTCTAATCGCAGAGGCGCGCCTTTTTTTCAAA
ATCCCGGAAAGCGTCGATGCCGACGTACACACACTGGTCACGACCAGGCG
AGAGGCCCGAGGCATACCACAGCAGACGCGATGAACCCACACCATGAACA
ACAACGCCGTAGCAGCGGCAGGTCAGCCATCTAGAGCGAAATCGTTGCCT
CTGAGACTGCAGGATGCAGGTGAAAGTGGTGCTGCTGCTGGGCATGGGGT
CGCCCAGACCGCGCCTGCTGGCGCGGCACAGCGGGCACCGAGCGGCATGG
CCCGCCAGGCCGTTCACAGCAGGGTTACCCCCCATACCGGTACACAACAG
GGGGTTCCACCTGGCGCGGTGATGATGCCGGGCTTCTCGGACGACGCTGA
TCGGCAAGCTCGTCAGGCAACCTTAGTAACGGTTATCAACGACAAGCGAT
TTGGCGACGCCCCACAAAAAAATTGGACCGAGTAGGAGAGCGGCGACGAT
GACGACGAGGAGGGGGGCAGCCCGACGTCAAGTGGCAGCAGCAATGTGTC
GGTAGAGGACAGTTTAGCCCCGTCGGACATTGGCTCACAGTCGGGAG

Coding sequence (CDS) from alignment at Scaffold_86:59295..63241-

>EsuBft1132_3a-0001 ID=EsuBft1132_3a-0001|Name=EsuBft1132_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=150bp|location=Sequence derived from alignment at Scaffold_86:59295..63241- (Ectocarpus subulatus male Bft15b)
ATGCTCCCGCGAACAGTAGGCGTCGTTGTCGGATCGTGNNNNNNNNNNNN
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