EsuBft1132_12a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1132_12a-0001
Unique Name	EsuBft1132_12a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_86	contig	Scaffold_86:13974..15921 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1132_12
Protein domains	Coil
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	143
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1132_12a	EsuBft1132_12a	Ectocarpus subulatus male Bft15b	gene	Scaffold_86 13974..15921 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1132_12a-0001-exon	agat-exon-96188	Ectocarpus subulatus male Bft15b	exon	Scaffold_86 13974..14202 -
EsuBft1132_12a-0001-exon	EsuBft1132_12a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_86 14716..15921 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1132_12a-0001-exon	agat-three_prime_utr-1256	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_86 13974..14202 -
EsuBft1132_12a-0001-exon	agat-three_prime_utr-1257	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_86 14716..15489 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1132_12a-0001-cds	EsuBft1132_12a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_86 15490..15921 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1132_12a-0001	EsuBft1132_12	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_86 15490..15921 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_86:13974..15921-
coding sequence from alignment at Scaffold_86:13974..15921-

spliced messenger RNA

>EsuBft1132_12a-0001 ID=EsuBft1132_12a-0001|Name=EsuBft1132_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1435bp|location=Sequence derived from alignment at Scaffold_86:13974..15921- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCATGGAGGACAACCGCCTCCCCAAGCGCATGCTGTTAGGAGCGAT
GGCGGGGGGCGTGGGATACCGGGGCGGGCAGGAGAGCGACTGGGTGTCTC
GTCTAGGAGAGGACCTCGTGGCCTTCAACATGGGAGACGAAAAGGAAGGG
GGGAAATGGAAAGAGAGCGCCAAGAACTCGGAGGTGTGGTACAACAAGGT
CGAGGACGGGGCGGCATGGTTCATGAGGAAATGGCACAGGCAGGAGGCGG
AAGCGTCCGCGAAGCGCCAGCGCGCGCGGGAAGCAGAAGCAGAGAGTACG
ACCATCTCAGGACCGAAGAGAAAGAGAACCGGCGAAGCGGCGGTGGGGGG
GAAGAAACGGCGAACGGGCACTGCTGTAGAAGCGAGTAGGGCGGCCGAGG
CAACGCTTGTGGCGAACTATGCACCCGGCTGATGTTGTTGCGCCCGGTTT
CCCTCCCTGCCGTATGCTATACTCCTTTATGTATGTCCTTGTATTGCCTT
CGGCCTCTGTGCTGTGTTTCTTTTTTTTTTTCATGACCTCCCTGCCTGCT
CTGCTGTGTTGGGTACCTTGATCTCGCTTTGCTGTTGCCTTTGTTTTTTT
GTACGGCTGGCTGTCTGCCCATCTGCCGCCTCTTTGCCCTGTTTGCTCCG
TTACTCCCATGCCCTGGTGCGCAGTGCCTGGTGCTGGTACGTTACGTTAC
CCTTTCATTTTTTCTTTCGGCGGGTGTGGGAAGCGTCCTCCTTTATTTAT
TTTTTTTGTTATTTTTGTTTTGTTTTATTTTGATCGGTGTCCGAGGGCTC
TTTTCTCGAACAGTAGGTGCGATACCTGTTCTTTTCTTTCTTTCGATCAT
TTTGTTTTCTTTTTCCGAGTGGTTTGTATCCTATTTTTGTTTTTTGTTTT
CTCGCGGCGTCGTATGTGCCGGGTTTTGAGACCACGGGCTCCCCATTTTT
TGTGGACTATAGAGCTAATGTGAGAAACAACAACAACAACAACAACAACA
ACACGCCCATATGCGAGTTTTTCTGAAGGCTTTTTTGTGTTGTTTTCGCG
AGGATCTGGACCAGAGTCCAAAACCGGGGTTTCACTACCCTCTTAGTACA
ACATTATCTACGTTTAGGTTCAGAAAAGTCGTGCAGTTTTCCACGGAAAG
GTGAAAAGAAACCCGACTTTTTTTCGCCTGTTCTATTCGTGATGTCATCG
CAAAAAACTTACGGGAAAAATGGGAACGTATCCAAAAATGAGAATGGGCG
TTTGTTTTTAGAAAGCAAACTACGCCTTTGCAACTCCCCCCAAAAAAGTT
GACAGTGCTGTAGGTCTTAACAGCAGCTTTCGAATGAGCTGTTGCTCAAG
CTGTATGTCCTCGGCATCGCCGAGGTAGCCAGCATCGCGAGAAATCAGGT
CGAAACCAGCACGAATCGCTTTTTGCGCCCGTGAG

protein sequence of EsuBft1132_12a-0001

>EsuBft1132_12 ID=EsuBft1132_12|Name=EsuBft1132_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=143bp
MRMEDNRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEG
GKWKESAKNSEVWYNKVEDGAAWFMRKWHRQEAEASAKRQRAREAEAEST
TISGPKRKRTGEAAVGGKKRRTGTAVEASRAAEATLVANYAPG

mRNA from alignment at Scaffold_86:13974..15921-

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1132_12a-0001 ID=EsuBft1132_12a-0001|Name=EsuBft1132_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1948bp|location=Sequence derived from alignment at Scaffold_86:13974..15921- (Ectocarpus subulatus male Bft15b)
ATGCGCATGGAGGACAACCGCCTCCCCAAGCGCATGCTGTTAGGAGCGAT
GGCGGGGGGCGTGGGATACCGGGGCGGGCAGGAGAGCGACTGGGTGTCTC
GTCTAGGAGAGGACCTCGTGGCCTTCAACATGGGAGACGAAAAGGAAGGG
GGGAAATGGAAAGAGAGCGCCAAGAACTCGGAGGTGTGGTACAACAAGGT
CGAGGACGGGGCGGCATGGTTCATGAGGAAATGGCACAGGCAGGAGGCGG
AAGCGTCCGCGAAGCGCCAGCGCGCGCGGGAAGCAGAAGCAGAGAGTACG
ACCATCTCAGGACCGAAGAGAAAGAGAACCGGCGAAGCGGCGGTGGGGGG
GAAGAAACGGCGAACGGGCACTGCTGTAGAAGCGAGTAGGGCGGCCGAGG
CAACGCTTGTGGCGAACTATGCACCCGGCTGATGTTGTTGCGCCCGGTTT
CCCTCCCTGCCGTATGCTATACTCCTTTATGTATGTCCTTGTATTGCCTT
CGGCCTCTGTGCTGTGTTTCTTTTTTTTTTTCATGACCTCCCTGCCTGCT
CTGCTGTGTTGGGTACCTTGATCTCGCTTTGCTGTTGCCTTTGTTTTTTT
GTACGGCTGGCTGTCTGCCCATCTGCCGCCTCTTTGCCCTGTTTGCTCCG
TTACTCCCATGCCCTGGTGCGCAGTGCCTGGTGCTGGTACGTTACGTTAC
CCTTTCATTTTTTCTTTCGGCGGGTGTGGGAAGCGTCCTCCTTTATTTAT
TTTTTTTGTTATTTTTGTTTTGTTTTATTTTGATCGGTGTCCGAGGGCTC
TTTTCTCGAACAGTAGGTGCGATACCTGTTCTTTTCTTTCTTTCGATCAT
TTTGTTTTCTTTTTCCGAGTGGTTTGTATCCTATTTTTGTTTTTTGTTTT
CTCGCGGCGTCGTATGTGCCGGGTTTTGAGACCACGGGCTCCCCATTTTT
TGTGGACTATAGAGCTAATGTGAGAAACAACAACAACAACAACAACAACA
ACACGCCCATATGCGAGTTTTTCTGAAGGCTTTTTTGTGTTGTTTTCGCG
AGGATCTGGACCAGAGTCCAAAACCGGGGTTTCACTACCCTCTTAGTACA
ACATTATCTACGTTTAGGTTCAGAAAAGTCGTGCAGTTTTCCACGGAAAG
GTGAAAAGAAACCCGACTTTTTTTCGCCTGTTCTATTCGTGATGTCATCG
CAAAAAGTACGTTTCCTTCCCTGAATACACACTTTGCTCGGCACACATCA
GGTTGACTTGGTGTTGCTCACCATAGTCTAGAGCAGCGGTAAAAGCGCAA
TGAGCAGCACCCGCCACGAAGGACAACACACACACTTAGAAAGATCCTAT
CCACCCGGCCTGCTGTTTTCAGTTTTCAGCAACAGCAGGCGCAGGGCAGA
TTGTCACAACAACCTGGGTGTTGCTTGCGATTTCTCCAGTTTGCCAGCTC
AAATTTCACGGTTGGTTGCGACTCCCATCTTTGACCACCAACTGCCCAAA
GGTAGACGAGCTCAACAATCATAGGGCGGCAGCCGCGCTGACGGCCAGCA
TCATATAGATGGCCAATCCGAAAGAATTAGCGTGTCGGAGGCCCTGTTGC
TCTTCTGCTGCGTGGTGCCGTGGATTGATGTTGACGTTTCCGACCAAAAA
CAGATCATCTCGCCGCATTTCTTCCAACGGCATTTTGGTCAGGTGGCACA
CGTCTCTCACACACAGCAGACTTACGGGAAAAATGGGAACGTATCCAAAA
ATGAGAATGGGCGTTTGTTTTTAGAAAGCAAACTACGCCTTTGCAACTCC
CCCCAAAAAAGTTGACAGTGCTGTAGGTCTTAACAGCAGCTTTCGAATGA
GCTGTTGCTCAAGCTGTATGTCCTCGGCATCGCCGAGGTAGCCAGCATCG
CGAGAAATCAGGTCGAAACCAGCACGAATCGCTTTTTGCGCCCGTGAG

Coding sequence (CDS) from alignment at Scaffold_86:13974..15921-

>EsuBft1132_12a-0001 ID=EsuBft1132_12a-0001|Name=EsuBft1132_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=432bp|location=Sequence derived from alignment at Scaffold_86:13974..15921- (Ectocarpus subulatus male Bft15b)
ATGCGCATGGAGGACAACCGCCTCCCCAAGCGCATGCTGTTAGGAGCGAT
GGCGGGGGGCGTGGGATACCGGGGCGGGCAGGAGAGCGACTGGGTGTCTC
GTCTAGGAGAGGACCTCGTGGCCTTCAACATGGGAGACGAAAAGGAAGGG
GGGAAATGGAAAGAGAGCGCCAAGAACTCGGAGGTGTGGTACAACAAGGT
CGAGGACGGGGCGGCATGGTTCATGAGGAAATGGCACAGGCAGGAGGCGG
AAGCGTCCGCGAAGCGCCAGCGCGCGCGGGAAGCAGAAGCAGAGAGTACG
ACCATCTCAGGACCGAAGAGAAAGAGAACCGGCGAAGCGGCGGTGGGGGG
GAAGAAACGGCGAACGGGCACTGCTGTAGAAGCGAGTAGGGCGGCCGAGG
CAACGCTTGTGGCGAACTATGCACCCGGCTGA