EsuBft1131_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1131_8a-0001
Unique NameEsuBft1131_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_409contigScaffold_409:113528..114170 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1131_8
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length52
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1131_8aEsuBft1131_8aEctocarpus subulatus male Bft15bgeneScaffold_409 113528..114170 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1131_8a-0001-exonagat-exon-9917Ectocarpus subulatus male Bft15bexonScaffold_409 113528..113569 -
EsuBft1131_8a-0001-exonEsuBft1131_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_409 113685..114170 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1131_8a-0001-cdsEsuBft1131_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_409 113528..113569 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1131_8a-0001EsuBft1131_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_409 113528..114170 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1131_8a-0001 ID=EsuBft1131_8a-0001|Name=EsuBft1131_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=528bp|location=Sequence derived from alignment at Scaffold_409:113528..114170- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCACGAAAGCTTCAACCCTAACCGTTTTATTTCATGACACCTCTCT
GCTCCACCCATGGTTGTCAACCTGCGTGCTTCAAGGTGAGACCCCGGCCT
CCAAGGCCCTAACGGCGTCACCAGAGACCGTCGAGGTTCCGGAGTCTCTG
GTTTTGGCTGTCCGTGCCGCCATTCGCAGTGGGGCGAGCATTCACCCGAA
GAAAATGATGGACTGGGACGAGAATGCCTACCTCGCCAGTCGCGTTTTGG
AGGTGATCGTGGATGAAGACCGCGCGTCAGGGGCCGGCGCCACCACCGCC
GGCCGAAGGAAGAGCAAGCATTGCGTTCCCCGGGCGGTGGAGCTGATGGT
CGCCGAGCGCTTCAGGGAGCGCCTTGCCGCGAGCAGGACGCAGTTGTCTA
GGACGGAGCTCGACAATAAGGAGACGGGTAACAAGCGGTCGGTATACTTT
AAGCTATGGAAGGACTTCAAGGACACGGACGTGGAGGGGTTTGGATCCCG
TCGAGAGGGAGATGTTGTTGCGAAGTGA
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protein sequence of EsuBft1131_8a-0001

>EsuBft1131_8 ID=EsuBft1131_8|Name=EsuBft1131_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=175bp
MCTKASTLTVLFHDTSLLHPWLSTCVLQGETPASKALTASPETVEVPESL
VLAVRAAIRSGASIHPKKMMDWDENAYLASRVLEVIVDEDRASGAGATTA
GRRKSKHCVPRAVELMVAERFRERLAASRTQLSRTELDNKETGNKRSVYF
KLWKDFKDTDVEGFGSRREGDVVAK
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mRNA from alignment at Scaffold_409:113528..114170-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1131_8a-0001 ID=EsuBft1131_8a-0001|Name=EsuBft1131_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=643bp|location=Sequence derived from alignment at Scaffold_409:113528..114170- (Ectocarpus subulatus male Bft15b)
ATGTGCACGAAAGCTTCAACCCTAACCGTTTTATTTCATGACACCTCTCT
GCTCCACCCATGGTTGTCAACCTGCGTGCTTCAAGGTGAGACCCCGGCCT
CCAAGGCCCTAACGGCGTCACCAGAGACCGTCGAGGTTCCGGAGTCTCTG
GTTTTGGCTGTCCGTGCCGCCATTCGCAGTGGGGCGAGCATTCACCCGAA
GAAAATGATGGACTGGGACGAGAATGCCTACCTCGCCAGTCGCGTTTTGG
AGGTGATCGTGGATGAAGACCGCGCGTCAGGGGCCGGCGCCACCACCGCC
GGCCGAAGGAAGAGCAAGCATTGCGTTCCCCGGGCGGTGGAGCTGATGGT
CGCCGAGCGCTTCAGGGAGCGCCTTGCCGCGAGCAGGACGCAGTTGTCTA
GGACGGAGCTCGACAATAAGGAGACGGGTAACAAGCGGTCGGTATACTTT
AAGCTATGGAAGGACTTCAAGGACACGGACGTGGAGGTGAGGTCTGAATG
CATACCGTTTTCTGTTAGCCCGCAGGAACGCATTTTGTTGAGGTTACGTT
CACGTTCAAGTGTAGTTCGTATGCTCACAGCAATCTAGCACCAAGGGTCA
GGGGTTTGGATCCCGTCGAGAGGGAGATGTTGTTGCGAAGTGA
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Coding sequence (CDS) from alignment at Scaffold_409:113528..114170-

>EsuBft1131_8a-0001 ID=EsuBft1131_8a-0001|Name=EsuBft1131_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=528bp|location=Sequence derived from alignment at Scaffold_409:113528..114170- (Ectocarpus subulatus male Bft15b)
ATGTGCACGAAAGCTTCAACCCTAACCGTTTTATTTCATGACACCTCTCT
GCTCCACCCATGGTTGTCAACCTGCGTGCTTCAAGGTGAGACCCCGGCCT
CCAAGGCCCTAACGGCGTCACCAGAGACCGTCGAGGTTCCGGAGTCTCTG
GTTTTGGCTGTCCGTGCCGCCATTCGCAGTGGGGCGAGCATTCACCCGAA
GAAAATGATGGACTGGGACGAGAATGCCTACCTCGCCAGTCGCGTTTTGG
AGGTGATCGTGGATGAAGACCGCGCGTCAGGGGCCGGCGCCACCACCGCC
GGCCGAAGGAAGAGCAAGCATTGCGTTCCCCGGGCGGTGGAGCTGATGGT
CGCCGAGCGCTTCAGGGAGCGCCTTGCCGCGAGCAGGACGCAGTTGTCTA
GGACGGAGCTCGACAATAAGGAGACGGGTAACAAGCGGTCGGTATACTTT
AAGCTATGGAAGGACTTCAAGGACACGGACGTGGAGGGGTTTGGATCCCG
TCGAGAGGGAGATGTTGTTGCGAAGTGA
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