EsuBft1131_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1131_7a-0001
Unique NameEsuBft1131_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_409contigScaffold_409:115659..118813 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog4792.ETI53028
ProteomeIdEsuBft1131_7
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl4776|Peronosporales
Length162
Evalue0.000779
EggNOG OGsKOG4585@1|root,KOG4585@2759|Eukaryota,3QI3U@4776|Peronosporales
Date last modified2016-06-14
Date creation2016-06-14
Descriptionnuclease activity
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1131_7aEsuBft1131_7aEctocarpus subulatus male Bft15bgeneScaffold_409 115659..118813 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1131_7a-0001EsuBft1131_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_409 115963..118176 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1131_7a-0001-exonagat-exon-9915Ectocarpus subulatus male Bft15bexonScaffold_409 115659..116100 +
EsuBft1131_7a-0001-exonagat-exon-9916Ectocarpus subulatus male Bft15bexonScaffold_409 116720..116889 +
EsuBft1131_7a-0001-exonEsuBft1131_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_409 117798..118813 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1131_7a-0001-exonagat-five_prime_utr-798Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_409 115659..115962 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1131_7a-0001-cdsEsuBft1131_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_409 115963..116100 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1131_7a-0001-exonagat-three_prime_utr-1253Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_409 118177..118813 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1131_7a-0001 ID=EsuBft1131_7a-0001|Name=EsuBft1131_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1628bp|location=Sequence derived from alignment at Scaffold_409:115659..118813+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTGTGTGTTCCGTGAAGAACACAGAGCCGTCTCACAACCCTAGTCGGGAG
GTGTATTGGGCCGGTACTCTGGCGAGTTTAACGATGGCATGCGTCCTTTG
ACGCTGGCGATTGCAAATACACCCCCTATGACACTGGTACATATTTCCTG
ACCGACACGCGCTCGTCCTTTGAACATTTTCTGCGCGTCGCTCCGAAACC
CCACAGCACTGCGATCGCCAATCAACGGCGCCATAGCTGTAGAAGTCCGC
GTTGCCGTGGCGTTGAGGATCCTGGCTGGCGCTAGTTACTGGGATGTTGC
CCTCATGTTTGGCTTGTCGGTGCCGACCACGTACCAGATCTTGTGGTCGG
TGATCGACGCCATCAACAAGACGCCTGCGGTTGGGGCATTCGACTTCCCC
CTGACCGAGGAAGGCTGCATGCGAAATGCCAACAGATTCAAGGAGAAGAG
CACCGATGGCATTTTCTCCTGGGTCGTCGCCGCCGTGGATGGTCTGTTCA
TCAAGGCCAAGGGTTCGTGTGCGAAGGACACCGCCAACGTCATCGCGAAC
TACTCCGGCAGCAAGTCCGCGTACGGCATCAACGTACAAGCGATGTGCAC
CGCCGACTACCGGATGACCAGGGTATCGGCTTGTAGCTACGGGCTAGGCC
TTCAATTCAAGTCACGCAGCAAGCTCCACCTCTCAGCGGTAGTCCAGCTA
CAGCGCATCGCGCAATCTCGTTCTCAATCAGAAACTTCGCTCTCAATCAC
ACGAAAACCTTGTTATCTGCACGACTTCCTGCAAGACGAGAAGGTAGCGC
AGATCCAGCTTGCAGAGGAGGATTCCTGCAGCGGGCGCAACCGGCTGGCC
CTCTGTGCTACGCAGCGCACCTTGCCGGCTGGCTGGCAAACGGAGCAACC
GGCTCCTTCGAGGAGCGGTGAGACCCCGGCCCGAGCGGCTATCCGCACGG
CCCTGGAGTCGAAGAAGCAGTGGAGGCCGGACTACANNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNGGCGCGGGAGGGAGGTACATCAATGT
AGAGGGCGGAGGGCGCTGGAACAACGTGTTTTGGGTGTTAGTGCTAGGGT
GTCGGCGCATCCCAGGGAGAGGTGGGGGGTGTGATGTGTGACATGTTGAT
TCTCGCTGACATGTTTTGTGGGTGTCGGTGTGGAGCGTTCTGACCAGATG
TGTCCGGGTACACTTGGTTCGTCATGTGTCTGTTCATGCCGGCAACACTT
TATGGTTAACATGCATCGTGTGCGGATGAAAGCGGGGTCCGGTAGGTCTC
GGAGGGTGCTTGTTTTACCTAGGGCATTAAAAGTGTGGGCATGTTCGACT
NCCTAATTAGGAGCGTGTGAATCGAAAACGTTGTTGTCGTTGATACAACT
TTTAATGATGTCTCTGCATCCCTGCATTAAATATTCGTCGCGTGGGTAAA
ACATTGCTCCAGGTTGCAGACCTGAAGGAGACCCACACACACGCTAAAAA
TTGGGGTCTTGTCGAATCCCATCGCGAACACATTCCTGCGCTTCAAGTGA
GCATGCGCGGAGACGGGAAAAATGCAAGGCTCCAAATTTGCGGAACCCAA
CCGTGCCTCAGAGTTCCCGTCAACACCC
back to top

protein sequence of EsuBft1131_7a-0001

>EsuBft1131_7 ID=EsuBft1131_7|Name=EsuBft1131_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=229bp
MFGLSVPTTYQILWSVIDAINKTPAVGAFDFPLTEEGCMRNANRFKEKST
DGIFSWVVAAVDGLFIKAKGSCAKDTANVIANYSGSKSAYGINVQAMCTA
DYRMTRVSACSYGLGLQFKSRSKLHLSAVVQLQRIAQSRSQSETSLSITR
KPCYLHDFLQDEKVAQIQLAEEDSCSGRNRLALCATQRTLPAGWQTEQPA
PSRSGETPARAAIRTALESKKQWRPDYXX
back to top

mRNA from alignment at Scaffold_409:115659..118813+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1131_7a-0001 ID=EsuBft1131_7a-0001|Name=EsuBft1131_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3155bp|location=Sequence derived from alignment at Scaffold_409:115659..118813+ (Ectocarpus subulatus male Bft15b)
TTGTGTGTTCCGTGAAGAACACAGAGCCGTCTCACAACCCTAGTCGGGAG
GTGTATTGGGCCGGTACTCTGGCGAGTTTAACGATGGCATGCGTCCTTTG
ACGCTGGCGATTGCAAATACACCCCCTATGACACTGGTACATATTTCCTG
ACCGACACGCGCTCGTCCTTTGAACATTTTCTGCGCGTCGCTCCGAAACC
CCACAGCACTGCGATCGCCAATCAACGGCGCCATAGCTGTAGAAGTCCGC
GTTGCCGTGGCGTTGAGGATCCTGGCTGGCGCTAGTTACTGGGATGTTGC
CCTCATGTTTGGCTTGTCGGTGCCGACCACGTACCAGATCTTGTGGTCGG
TGATCGACGCCATCAACAAGACGCCTGCGGTTGGGGCATTCGACTTCCCC
CTGACCGAGGAAGGCTGCATGCGAAATGCCAACAGATTCAAGGTGAGGCC
TAACGATGATCATTACTGCTGCTGTGGGTTATTTTTGGCGGCATTCCCTT
GACCAGCCGCGGGATGTCGTTTTTTTTTAGTACGTCTGGCGTTTCCAGCC
GTTTTGGTGTAGGGAGGCCTATACACAGCCTTCGACGGTAACGCAGGAAA
AAAAATGTCGTCCCCGGCGGATACAAGTTCGGATTGTCATCGTGGTCAGC
ATGCCTTCAATCGAAAAACAACCCCCGGGTCCAGGGTGGTTCTCCAGCTG
TTGGTCTTTGTAAAAATGGCCTTTTTACAAATAAATGTTTTTTTTTGTGT
CATCATTAGTGTATGCTGGCCGTGTTGGTTCCGCCCCGCAACAGTGGCCC
AGCAACTGCTTTTAGTCAACCACGTGGCTCTGAGATACCCTGGTACATTT
TTACCGCTGAACCTGACGCAATATTAGGATTAGCAAACACGGTATGTGCA
CCGTTGCTGGTGATGGCGCCGTCGCACACGACGTCAACCCACACAACGTA
CAGCCGAACGCAATTTACCGAAGTTCGTCAACGTCCATCTCTCGACTATT
TTTTTTCCCCTTCCCGGCACTGCTACTTTCCCGCCCTCGTGTCTGCCGTC
TACAAATGCAGGAGAAGAGCACCGATGGCATTTTCTCCTGGGTCGTCGCC
GCCGTGGATGGTCTGTTCATCAAGGCCAAGGGTTCGTGTGCGAAGGACAC
CGCCAACGTCATCGCGAACTACTCCGGCAGCAAGTCCGCGTACGGCATCA
ACGTACAAGCGATGTGCACCGCCGACTACCGGTTCTGCGCAATGTCGGCG
ATCTCTCCAGGCTCCACGAACGACTGGGTGGCATGGAATCGATCTTCCCT
CGCCAAGGCCGTCGCCCGCTTGCCCGCCGGATTTCACATCATTGGTGACG
CCGCCTATCCCATCGGAGAATAGCTTCTGACGCCGTACCTTGTGAGGCTC
CTGCCGCCGGGTGAGGACTCGTGCAACTTCCACCTGAGCCAGCTTCGTGT
CAAGATCGAGGAGGGCTTCGGCATCCTGGTTTCGATTCGGGGCATTCTGT
GGCGACCTCTCCGTGTGCAGTTCGGAGGACGCGCGGATCTCATCACGGCT
CTTTTTCATCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNAACAACATATTCGCCTGATTGAGAGCGAAGTATCTGATTGAGAGCGA
GAGCCAAAAAAATTGAAATTTCGGGTCCAGACGCCTCTTGCCATTTCTTG
GGAAGTAGGGTGCGGGCTCTTCTAAGAAGCGGCGCAAATTTAAGGTCTCA
TCAGCAGCGTCACGAGCATATGCGTGTCATCGCGATCGGATGCTGCAGCT
AGGAGCTAGACAAGTTGCTAGATTTCCCCAGATTGGGTATTCCTGCCTCA
AACTGTTTCAGGGCGATTTGATCGCGGGCGGTGAGCTCTGCTGTAGATTC
TGCTCCCCGCTGTAGCTCCACAACGAGAGACGCCCACAGGATGACCAGGG
TATCGGCTTGTAGCTACGGGCTAGGCCTTCAATTCAAGTCACGCAGCAAG
CTCCACCTCTCAGCGGTAGTCCAGCTACAGCGCATCGCGCAATCTCGTTC
TCAATCAGAAACTTCGCTCTCAATCACACGAAAACCTTGTTATCTGCACG
ACTTCCTGCAAGACGAGAAGGTAGCGCAGATCCAGCTTGCAGAGGAGGAT
TCCTGCAGCGGGCGCAACCGGCTGGCCCTCTGTGCTACGCAGCGCACCTT
GCCGGCTGGCTGGCAAACGGAGCAACCGGCTCCTTCGAGGAGCGGTGAGA
CCCCGGCCCGAGCGGCTATCCGCACGGCCCTGGAGTCGAAGAAGCAGTGG
AGGCCGGACTACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NGGCGCGGGAGGGAGGTACATCAATGTAGAGGGCGGAGGGCGCTGGAACA
ACGTGTTTTGGGTGTTAGTGCTAGGGTGTCGGCGCATCCCAGGGAGAGGT
GGGGGGTGTGATGTGTGACATGTTGATTCTCGCTGACATGTTTTGTGGGT
GTCGGTGTGGAGCGTTCTGACCAGATGTGTCCGGGTACACTTGGTTCGTC
ATGTGTCTGTTCATGCCGGCAACACTTTATGGTTAACATGCATCGTGTGC
GGATGAAAGCGGGGTCCGGTAGGTCTCGGAGGGTGCTTGTTTTACCTAGG
GCATTAAAAGTGTGGGCATGTTCGACTNCCTAATTAGGAGCGTGTGAATC
GAAAACGTTGTTGTCGTTGATACAACTTTTAATGATGTCTCTGCATCCCT
GCATTAAATATTCGTCGCGTGGGTAAAACATTGCTCCAGGTTGCAGACCT
GAAGGAGACCCACACACACGCTAAAAATTGGGGTCTTGTCGAATCCCATC
GCGAACACATTCCTGCGCTTCAAGTGAGCATGCGCGGAGACGGGAAAAAT
GCAAGGCTCCAAATTTGCGGAACCCAACCGTGCCTCAGAGTTCCCGTCAA
CACCC
back to top

Coding sequence (CDS) from alignment at Scaffold_409:115659..118813+

>EsuBft1131_7a-0001 ID=EsuBft1131_7a-0001|Name=EsuBft1131_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=687bp|location=Sequence derived from alignment at Scaffold_409:115659..118813+ (Ectocarpus subulatus male Bft15b)
ATGTTTGGCTTGTCGGTGCCGACCACGTACCAGATCTTGTGGTCGGTGAT
CGACGCCATCAACAAGACGCCTGCGGTTGGGGCATTCGACTTCCCCCTGA
CCGAGGAAGGCTGCATGCGAAATGCCAACAGATTCAAGGAGAAGAGCACC
GATGGCATTTTCTCCTGGGTCGTCGCCGCCGTGGATGGTCTGTTCATCAA
GGCCAAGGGTTCGTGTGCGAAGGACACCGCCAACGTCATCGCGAACTACT
CCGGCAGCAAGTCCGCGTACGGCATCAACGTACAAGCGATGTGCACCGCC
GACTACCGGATGACCAGGGTATCGGCTTGTAGCTACGGGCTAGGCCTTCA
ATTCAAGTCACGCAGCAAGCTCCACCTCTCAGCGGTAGTCCAGCTACAGC
GCATCGCGCAATCTCGTTCTCAATCAGAAACTTCGCTCTCAATCACACGA
AAACCTTGTTATCTGCACGACTTCCTGCAAGACGAGAAGGTAGCGCAGAT
CCAGCTTGCAGAGGAGGATTCCTGCAGCGGGCGCAACCGGCTGGCCCTCT
GTGCTACGCAGCGCACCTTGCCGGCTGGCTGGCAAACGGAGCAACCGGCT
CCTTCGAGGAGCGGTGAGACCCCGGCCCGAGCGGCTATCCGCACGGCCCT
GGAGTCGAAGAAGCAGTGGAGGCCGGACTACANNNNN
back to top