EsuBft1131_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1131_6a-0001
Unique NameEsuBft1131_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_409contigScaffold_409:119312..120246 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FIC6
ProteomeIdEsuBft1131_6
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2880.D7FIC6|-
Length78
Hectar predicted targeting categoryother localisation
Evalue6.71e-43
EggNOG OGs2EJXG@1|root,2SPZB@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1131_6aEsuBft1131_6aEctocarpus subulatus male Bft15bgeneScaffold_409 119312..120246 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1131_6a-0001-exonagat-exon-9914Ectocarpus subulatus male Bft15bexonScaffold_409 119312..120088 -
EsuBft1131_6a-0001-exonEsuBft1131_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_409 120235..120246 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1131_6a-0001-exonagat-three_prime_utr-1252Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_409 119312..119704 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1131_6a-0001-cdsEsuBft1131_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_409 119705..120088 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1131_6a-0001EsuBft1131_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_409 119705..120246 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1131_6a-0001 ID=EsuBft1131_6a-0001|Name=EsuBft1131_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=789bp|location=Sequence derived from alignment at Scaffold_409:119312..120246- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACATGCAGCGCCACGGCTCGACGTACACACACCGGTCCCGACCAGG
CGAGAGCCCCGAGGACTCCCACAACAGACGTAATAAACCCACACCAAGCA
ACGCCGCTGCCATAAAAACCGCACTCGCCGATATGGAGCCACTGCTGGGA
AAGGTTGGTGGATCGGAAAAATTAGAGTGGTCCAAAAAAAAAGAGGAAAA
CGCTTGCAAGACTGCTGAACGCAACAGCAAAGCTTCTGGCCTCGCCCTCC
ACAAGGAAATGACCGAGTGCCACGCCGAATTCTCGAAGAAAATTGTGGAG
GAGGAGAAACAAAAAGAAGCGGGTTATCAGATGAGAGTTAGATTCCTGCG
CAAAATGTTTGCCGGCATCGAGAAGGAAATGTTTGGCGACGAATAACACC
CATATGCACTCTCGGAAAAGTGTTACCTTGCAATCGTCGAATTTTATGCA
TGCGTGACGGGGGGGGGGCGGGGGGGAGTTTTATTTTCATCGTTGGGCAT
GGTTGAGTCAACGTCTTCGTTTCGTCGCAGCATTGAGGATACGTGCGCCT
CCGCAGAGACGTGTGGGTTGTTTGGTTGGCAACAACACTTTGAGAGGATG
CCTTGCGGCAACAAAGGAGTATCAACGAAAAAATACGGTGGAAGAACGCC
GAGACCGTTGTGGTTCACGGGCAAGTTGCTGCGCCTGTATTCAACGAACA
CGAGGGCGCGTTTTTGTTTTTCTCTCCCTGCTGCAGGGCTTGCTTGCTGC
GAGGGTCGTAGCCTTCTATTTTTTTTGGGGCCAGGCGGG
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protein sequence of EsuBft1131_6a-0001

>EsuBft1131_6 ID=EsuBft1131_6|Name=EsuBft1131_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=131bp
MYMQRHGSTYTHRSRPGESPEDSHNRRNKPTPSNAAAIKTALADMEPLLG
KVGGSEKLEWSKKKEENACKTAERNSKASGLALHKEMTECHAEFSKKIVE
EEKQKEAGYQMRVRFLRKMFAGIEKEMFGDE
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mRNA from alignment at Scaffold_409:119312..120246-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1131_6a-0001 ID=EsuBft1131_6a-0001|Name=EsuBft1131_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=935bp|location=Sequence derived from alignment at Scaffold_409:119312..120246- (Ectocarpus subulatus male Bft15b)
ATGTACATGCAGGTAAGGGGTATTATTATCAGGCCGAAAAAATACGTAAC
TTTTTTCACCGAATAGTAACTTTTTTGACGGAACCGTAACTAGGGTTTCC
GGTGATTCTTATCGGCAGAAGGCGCGAAGGCGCGTATTTTTTCAAAATTT
ACGTAAAGCGCCACGGCTCGACGTACACACACCGGTCCCGACCAGGCGAG
AGCCCCGAGGACTCCCACAACAGACGTAATAAACCCACACCAAGCAACGC
CGCTGCCATAAAAACCGCACTCGCCGATATGGAGCCACTGCTGGGAAAGG
TTGGTGGATCGGAAAAATTAGAGTGGTCCAAAAAAAAAGAGGAAAACGCT
TGCAAGACTGCTGAACGCAACAGCAAAGCTTCTGGCCTCGCCCTCCACAA
GGAAATGACCGAGTGCCACGCCGAATTCTCGAAGAAAATTGTGGAGGAGG
AGAAACAAAAAGAAGCGGGTTATCAGATGAGAGTTAGATTCCTGCGCAAA
ATGTTTGCCGGCATCGAGAAGGAAATGTTTGGCGACGAATAACACCCATA
TGCACTCTCGGAAAAGTGTTACCTTGCAATCGTCGAATTTTATGCATGCG
TGACGGGGGGGGGGCGGGGGGGAGTTTTATTTTCATCGTTGGGCATGGTT
GAGTCAACGTCTTCGTTTCGTCGCAGCATTGAGGATACGTGCGCCTCCGC
AGAGACGTGTGGGTTGTTTGGTTGGCAACAACACTTTGAGAGGATGCCTT
GCGGCAACAAAGGAGTATCAACGAAAAAATACGGTGGAAGAACGCCGAGA
CCGTTGTGGTTCACGGGCAAGTTGCTGCGCCTGTATTCAACGAACACGAG
GGCGCGTTTTTGTTTTTCTCTCCCTGCTGCAGGGCTTGCTTGCTGCGAGG
GTCGTAGCCTTCTATTTTTTTTGGGGCCAGGCGGG
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Coding sequence (CDS) from alignment at Scaffold_409:119312..120246-

>EsuBft1131_6a-0001 ID=EsuBft1131_6a-0001|Name=EsuBft1131_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=396bp|location=Sequence derived from alignment at Scaffold_409:119312..120246- (Ectocarpus subulatus male Bft15b)
ATGTACATGCAGCGCCACGGCTCGACGTACACACACCGGTCCCGACCAGG
CGAGAGCCCCGAGGACTCCCACAACAGACGTAATAAACCCACACCAAGCA
ACGCCGCTGCCATAAAAACCGCACTCGCCGATATGGAGCCACTGCTGGGA
AAGGTTGGTGGATCGGAAAAATTAGAGTGGTCCAAAAAAAAAGAGGAAAA
CGCTTGCAAGACTGCTGAACGCAACAGCAAAGCTTCTGGCCTCGCCCTCC
ACAAGGAAATGACCGAGTGCCACGCCGAATTCTCGAAGAAAATTGTGGAG
GAGGAGAAACAAAAAGAAGCGGGTTATCAGATGAGAGTTAGATTCCTGCG
CAAAATGTTTGCCGGCATCGAGAAGGAAATGTTTGGCGACGAATAA
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