EsuBft1131_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1131_5a-0001
Unique Name	EsuBft1131_5a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_409	contig	Scaffold_409:120455..122524 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	6669.EFX68856
ProteomeId	EsuBft1131_5
Protein domains	IPR004875
Protein domains	PTHR19303
Owner	apollo_admin@sb-roscoff.fr
Note	jerky protein homolog-like os:homo sapiens gn:jrkl pe:2 sv:2 [Automatic annotation]
Nb exon	2
Max annot lvl	33208\|Metazoa
Length	1569
Hectar predicted targeting category	mitochondrion
Evalue	1.09e-65
EggNOG OGs	KOG3105@1\|root,KOG3105@2759\|Eukaryota,38HJW@33154\|Opisthokonta,3BCG5@33208\|Metazoa,3CXR0@33213\|Bilateria,420II@6656\|Arthropoda
Date last modified	2016-06-14
Date creation	2016-06-14
Description	Jerky protein homolog-like
COG category	BD

Cross References

External references for this mRNA


Database	Accession
GO	0003676

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1131_5a	EsuBft1131_5a	Ectocarpus subulatus male Bft15b	gene	Scaffold_409 120455..122524 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1131_5a-0001-exon	EsuBft1131_5a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_409 120455..121389 +
EsuBft1131_5a-0001-exon	agat-exon-9913	Ectocarpus subulatus male Bft15b	exon	Scaffold_409 121891..122524 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1131_5a-0001-cds	EsuBft1131_5a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_409 120455..121389 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1131_5a-0001-exon	agat-three_prime_utr-1251	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_409 122450..122524 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1131_5a-0001	EsuBft1131_5	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_409 120455..122449 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_409:120455..122524+
coding sequence from alignment at Scaffold_409:120455..122524+

spliced messenger RNA

>EsuBft1131_5a-0001 ID=EsuBft1131_5a-0001|Name=EsuBft1131_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1569bp|location=Sequence derived from alignment at Scaffold_409:120455..122524+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGAAGTACACCGTCACCGGCAACGTCATCCGATCGTTCGGCCGCTC
TGCCAAGGCCACCCTGTTGGGCTCGGCGAAAACGACTGACTCTGTGAGGA
AGAGGCTCGAGGACTTCAAGGCTGGCGACAAGTGGAGCAAGAACTTCGTG
AAGCGCAACGACCTCCACAGCCACAAACTTCATGGGACGGCCGGCAGCGT
CGACCACGACCGCATCAAAGAGGGCATGGAGGAGGTCCGCGCTGCTTGCG
AGAAGTACCCGGCGAGGAACATCTTCAACGTCGACGAGACCGGCATCCAG
TGGAAGCTCATTGCCAGGAGGACGTATCTCGCCGCGTTCGAGGATCGGAA
GACCACTAGAGGGAGCAAGAACATGGAGTTCAAGGATCGCATATCTGCGA
TCATGTGCGCGAATGCCACTGGCACTGCGAAAGTGTCACTGGCGATCATC
GGCACGGCCAAGAACCCGCGCTGCTTCAGGCGCCGGAAATGTCCTCTCAA
GTACTTCGCGCAAAGCAACGCGTGGTCTGATGGGCCGACCTTCAAGAAGT
GGTGGCAGGAGGTTTTCTTACCCTTCATTCGGCGCTGGACTCACGAGCCC
GTGCTGCTGCTCATGGATGGCTGCTCGTCGCACGGTGATTTGATCGACCC
TGTCGGGCAGGTGGAGGTGGTGATGTACCCACCGAACTGCACCAGCGTAC
ACCAGCCCATGGACATGGGGATCATCGCGGCCACCAAGGTGATCTACAGG
AGGGAGCTCCTCGACGCCAAGGTGTCAACCATGCTCGTGGCTCATGCACT
GCGCGCCGAGGCCAAGAGCCGCAAGATGGCGCGCGGGACCGCGGGCTTGG
CGGAGGGAAACCACCCCCACGTGCTGGACGCGGCAGACCTTCTCAAGACC
GCCCGGGGCCGCATCACCCCCACGACCATCGCCAGGTGCTTCGTGAAGGC
CAAGACGCTCCCCGAAGATATGGAGGCTGAGCTCACGGCTGCGCACGGGA
AGCACAGGCCGAGTGGCTCCGCGGCCCCGGCGGGAGGGCCAGTGCTGGGG
CGTGCAGACAAGGAGTCTGTGGATCTTCTCGCAAAGACCCTCACCAGCAT
GAGCTCACGGGTGCATGAAGCACAGGAGAAGTCCTACGGTGTTGACACGG
AGTTGACAGAAATGCTGGCGGCCCTGGGCATCACTGCGGGAGAGCCCGCC
GATGCTGCCGCTGTGCGAGCGGCTGAAGTGTGGGCGACGGTGGAGGACCA
GCCGGATGTTGTGGAAGCCATGCAGCAGGACGCCGTGGACGAGATGACGG
AGCTACTTGATGGCACGGCTCCCGCGGAGGAGAGCTCGGACGACGAAGCG
AGCAAGGAACCCTCAAGTCATACGGCACCTCCGCCGTATGCGGCACTTTC
GTCGCACTTCGGGGCTCTGGAGACGGCAGCGGAGGGGAGCGGCAACCGTG
ACGCCGCTTTCCATCTACAGAAGGCCAAAATGGCAATGANNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNN

protein sequence of EsuBft1131_5a-0001

>EsuBft1131_5 ID=EsuBft1131_5|Name=EsuBft1131_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=498bp
MAKYTVTGNVIRSFGRSAKATLLGSAKTTDSVRKRLEDFKAGDKWSKNFV
KRNDLHSHKLHGTAGSVDHDRIKEGMEEVRAACEKYPARNIFNVDETGIQ
WKLIARRTYLAAFEDRKTTRGSKNMEFKDRISAIMCANATGTAKVSLAII
GTAKNPRCFRRRKCPLKYFAQSNAWSDGPTFKKWWQEVFLPFIRRWTHEP
VLLLMDGCSSHGDLIDPVGQVEVVMYPPNCTSVHQPMDMGIIAATKVIYR
RELLDAKVSTMLVAHALRAEAKSRKMARGTAGLAEGNHPHVLDAADLLKT
ARGRITPTTIARCFVKAKTLPEDMEAELTAAHGKHRPSGSAAPAGGPVLG
RADKESVDLLAKTLTSMSSRVHEAQEKSYGVDTELTEMLAALGITAGEPA
DAAAVRAAEVWATVEDQPDVVEAMQQDAVDEMTELLDGTAPAEESSDDEA
SKEPSSHTAPPPYAALSSHFGALETAAEGSGNRDAAFHLQKAKMAMXX

mRNA from alignment at Scaffold_409:120455..122524+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1131_5a-0001 ID=EsuBft1131_5a-0001|Name=EsuBft1131_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2070bp|location=Sequence derived from alignment at Scaffold_409:120455..122524+ (Ectocarpus subulatus male Bft15b)
ATGGCGAAGTACACCGTCACCGGCAACGTCATCCGATCGTTCGGCCGCTC
TGCCAAGGCCACCCTGTTGGGCTCGGCGAAAACGACTGACTCTGTGAGGA
AGAGGCTCGAGGACTTCAAGGCTGGCGACAAGTGGAGCAAGAACTTCGTG
AAGCGCAACGACCTCCACAGCCACAAACTTCATGGGACGGCCGGCAGCGT
CGACCACGACCGCATCAAAGAGGGCATGGAGGAGGTCCGCGCTGCTTGCG
AGAAGTACCCGGCGAGGAACATCTTCAACGTCGACGAGACCGGCATCCAG
TGGAAGCTCATTGCCAGGAGGACGTATCTCGCCGCGTTCGAGGATCGGAA
GACCACTAGAGGGAGCAAGAACATGGAGTTCAAGGATCGCATATCTGCGA
TCATGTGCGCGAATGCCACTGGCACTGCGAAAGTGTCACTGGCGATCATC
GGCACGGCCAAGAACCCGCGCTGCTTCAGGCGCCGGAAATGTCCTCTCAA
GTACTTCGCGCAAAGCAACGCGTGGTCTGATGGGCCGACCTTCAAGAAGT
GGTGGCAGGAGGTTTTCTTACCCTTCATTCGGCGCTGGACTCACGAGCCC
GTGCTGCTGCTCATGGATGGCTGCTCGTCGCACGGTGATTTGATCGACCC
TGTCGGGCAGGTGGAGGTGGTGATGTACCCACCGAACTGCACCAGCGTAC
ACCAGCCCATGGACATGGGGATCATCGCGGCCACCAAGGTGATCTACAGG
AGGGAGCTCCTCGACGCCAAGGTGTCAACCATGCTCGTGGCTCATGCACT
GCGCGCCGAGGCCAAGAGCCGCAAGATGGCGCGCGGGACCGCGGGCTTGG
CGGAGGGAAACCACCCCCACGTGCTGGACGCGGCAGACCTTCTCAAGACC
GCCCGGGGCCGCATCACCCCCACGACCATCGCCAGGTATTGCTTCGAAAA
TACAAGTGGTGTCCGGTTCTTCCACCTGCAAAGATAGAAACCGGTGTACA
TCTGATGTATGATTGTGTGCCAGGGTTGAACCCCCTTAGCTGTTTCATGT
CGCTGTGAGAAAGACAAATGAATTTGAAATCGCTCNGCGCGCGGGACCGC
GGGCTTGGCGGAGGGAAACCACCCCCACGTGCTGGACGCGGCAGACCTTC
TCAAGACCGCCTGGGGCAGCATCACCCCCACGACCATCGCCAGGTATTGC
TTCGAAAATACAAGTGGTGTCCGGTTCTTCCACCTGCAAAGATAGAAACC
GGTGTACATCTGATGTATCATTGTGTGCCAGGGTTGAACCCCCTTAGCTG
TTTCATGTCGCTGTGAGAAAGACAAATGAATTTGAAATCGCTCGATTACA
CGTTTGCCAACAGATGTCCTCGTTTCTTGTGCCTGACACCCTCTATTGCG
AATGTGCCGCTGCTTTCCCCGCACCTCGCCCACCAGGTGCTTCGTGAAGG
CCAAGACGCTCCCCGAAGATATGGAGGCTGAGCTCACGGCTGCGCACGGG
AAGCACAGGCCGAGTGGCTCCGCGGCCCCGGCGGGAGGGCCAGTGCTGGG
GCGTGCAGACAAGGAGTCTGTGGATCTTCTCGCAAAGACCCTCACCAGCA
TGAGCTCACGGGTGCATGAAGCACAGGAGAAGTCCTACGGTGTTGACACG
GAGTTGACAGAAATGCTGGCGGCCCTGGGCATCACTGCGGGAGAGCCCGC
CGATGCTGCCGCTGTGCGAGCGGCTGAAGTGTGGGCGACGGTGGAGGACC
AGCCGGATGTTGTGGAAGCCATGCAGCAGGACGCCGTGGACGAGATGACG
GAGCTACTTGATGGCACGGCTCCCGCGGAGGAGAGCTCGGACGACGAAGC
GAGCAAGGAACCCTCAAGTCATACGGCACCTCCGCCGTATGCGGCACTTT
CGTCGCACTTCGGGGCTCTGGAGACGGCAGCGGAGGGGAGCGGCAACCGT
GACGCCGCTTTCCATCTACAGAAGGCCAAAATGGCAATGANNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNN

Coding sequence (CDS) from alignment at Scaffold_409:120455..122524+

>EsuBft1131_5a-0001 ID=EsuBft1131_5a-0001|Name=EsuBft1131_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1494bp|location=Sequence derived from alignment at Scaffold_409:120455..122524+ (Ectocarpus subulatus male Bft15b)
ATGGCGAAGTACACCGTCACCGGCAACGTCATCCGATCGTTCGGCCGCTC
TGCCAAGGCCACCCTGTTGGGCTCGGCGAAAACGACTGACTCTGTGAGGA
AGAGGCTCGAGGACTTCAAGGCTGGCGACAAGTGGAGCAAGAACTTCGTG
AAGCGCAACGACCTCCACAGCCACAAACTTCATGGGACGGCCGGCAGCGT
CGACCACGACCGCATCAAAGAGGGCATGGAGGAGGTCCGCGCTGCTTGCG
AGAAGTACCCGGCGAGGAACATCTTCAACGTCGACGAGACCGGCATCCAG
TGGAAGCTCATTGCCAGGAGGACGTATCTCGCCGCGTTCGAGGATCGGAA
GACCACTAGAGGGAGCAAGAACATGGAGTTCAAGGATCGCATATCTGCGA
TCATGTGCGCGAATGCCACTGGCACTGCGAAAGTGTCACTGGCGATCATC
GGCACGGCCAAGAACCCGCGCTGCTTCAGGCGCCGGAAATGTCCTCTCAA
GTACTTCGCGCAAAGCAACGCGTGGTCTGATGGGCCGACCTTCAAGAAGT
GGTGGCAGGAGGTTTTCTTACCCTTCATTCGGCGCTGGACTCACGAGCCC
GTGCTGCTGCTCATGGATGGCTGCTCGTCGCACGGTGATTTGATCGACCC
TGTCGGGCAGGTGGAGGTGGTGATGTACCCACCGAACTGCACCAGCGTAC
ACCAGCCCATGGACATGGGGATCATCGCGGCCACCAAGGTGATCTACAGG
AGGGAGCTCCTCGACGCCAAGGTGTCAACCATGCTCGTGGCTCATGCACT
GCGCGCCGAGGCCAAGAGCCGCAAGATGGCGCGCGGGACCGCGGGCTTGG
CGGAGGGAAACCACCCCCACGTGCTGGACGCGGCAGACCTTCTCAAGACC
GCCCGGGGCCGCATCACCCCCACGACCATCGCCAGGTGCTTCGTGAAGGC
CAAGACGCTCCCCGAAGATATGGAGGCTGAGCTCACGGCTGCGCACGGGA
AGCACAGGCCGAGTGGCTCCGCGGCCCCGGCGGGAGGGCCAGTGCTGGGG
CGTGCAGACAAGGAGTCTGTGGATCTTCTCGCAAAGACCCTCACCAGCAT
GAGCTCACGGGTGCATGAAGCACAGGAGAAGTCCTACGGTGTTGACACGG
AGTTGACAGAAATGCTGGCGGCCCTGGGCATCACTGCGGGAGAGCCCGCC
GATGCTGCCGCTGTGCGAGCGGCTGAAGTGTGGGCGACGGTGGAGGACCA
GCCGGATGTTGTGGAAGCCATGCAGCAGGACGCCGTGGACGAGATGACGG
AGCTACTTGATGGCACGGCTCCCGCGGAGGAGAGCTCGGACGACGAAGCG
AGCAAGGAACCCTCAAGTCATACGGCACCTCCGCCGTATGCGGCACTTTC
GTCGCACTTCGGGGCTCTGGAGACGGCAGCGGAGGGGAGCGGCAACCGTG
ACGCCGCTTTCCATCTACAGAAGGCCAAAATGGCAATGANNNNN