EsuBft1130_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1130_8a-0001
Unique NameEsuBft1130_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_402contigScaffold_402:364283..364689 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog7029.ACYPI085906-PA
ProteomeIdEsuBft1130_8
Protein domainsPTHR19303
Protein domainsIPR004875
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Max annot lvl33208|Metazoa
Length40
Evalue1.3e-10
EggNOG OGsKOG3105@1|root,KOG3105@2759|Eukaryota,3A3P5@33154|Opisthokonta,3BQDY@33208|Metazoa
Date last modified2016-06-13
Date creation2016-06-13
DescriptionJerky protein homolog-like
COG categoryB
Cross References
External references for this mRNA
DatabaseAccession
GO0003676
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1130_8aEsuBft1130_8aEctocarpus subulatus male Bft15bgeneScaffold_402 364283..364689 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1130_8a-0001-exonEsuBft1130_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_402 364283..364689 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1130_8a-0001-cdsEsuBft1130_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_402 364283..364669 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1130_8a-0001-exonagat-five_prime_utr-793Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_402 364670..364689 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1130_8a-0001EsuBft1130_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_402 364283..364669 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1130_8a-0001 ID=EsuBft1130_8a-0001|Name=EsuBft1130_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=407bp|location=Sequence derived from alignment at Scaffold_402:364283..364689- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTTCCACCCCGCAAGGTACAATGTCGGGGAAGGCTATCGTGCCAACAGGC
ACCAAGGTGCCCGGCGCGAGGCGCTCCAACTCGCGAGAAAATACGACGGT
GGTCGCTAGCATCGGCGCCGACGGCCACACCTACTACCCTATCATCATCT
ACAAAGGCCAGCGTATGCAACCCGCTTGGATCCAGGACAAGAACGGCGTC
CCCGACGCGAAGTACACCGTCACGGAGTCATCCTTCATCCAGAGCCACGT
GTTCCTCGACTACCTTCGAGACCTCCGCGAACAGCTCGATGCACGCGGCT
TGGAGGGAAAAGTTGCCCTTGTGCTCGACGGCCACGCCTCGCACACGACC
TTCGACGCCATTAGCTTGGCCATATCTCTGGACATCGACCTCTTCCAGCT
CCCGTNN
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protein sequence of EsuBft1130_8a-0001

>EsuBft1130_8 ID=EsuBft1130_8|Name=EsuBft1130_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=129bp
MSGKAIVPTGTKVPGARRSNSRENTTVVASIGADGHTYYPIIIYKGQRMQ
PAWIQDKNGVPDAKYTVTESSFIQSHVFLDYLRDLREQLDARGLEGKVAL
VLDGHASHTTFDAISLAISLDIDLFQLPX
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mRNA from alignment at Scaffold_402:364283..364689-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1130_8a-0001 ID=EsuBft1130_8a-0001|Name=EsuBft1130_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=407bp|location=Sequence derived from alignment at Scaffold_402:364283..364689- (Ectocarpus subulatus male Bft15b)
GTTCCACCCCGCAAGGTACAATGTCGGGGAAGGCTATCGTGCCAACAGGC
ACCAAGGTGCCCGGCGCGAGGCGCTCCAACTCGCGAGAAAATACGACGGT
GGTCGCTAGCATCGGCGCCGACGGCCACACCTACTACCCTATCATCATCT
ACAAAGGCCAGCGTATGCAACCCGCTTGGATCCAGGACAAGAACGGCGTC
CCCGACGCGAAGTACACCGTCACGGAGTCATCCTTCATCCAGAGCCACGT
GTTCCTCGACTACCTTCGAGACCTCCGCGAACAGCTCGATGCACGCGGCT
TGGAGGGAAAAGTTGCCCTTGTGCTCGACGGCCACGCCTCGCACACGACC
TTCGACGCCATTAGCTTGGCCATATCTCTGGACATCGACCTCTTCCAGCT
CCCGTNN
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Coding sequence (CDS) from alignment at Scaffold_402:364283..364689-

>EsuBft1130_8a-0001 ID=EsuBft1130_8a-0001|Name=EsuBft1130_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=387bp|location=Sequence derived from alignment at Scaffold_402:364283..364689- (Ectocarpus subulatus male Bft15b)
ATGTCGGGGAAGGCTATCGTGCCAACAGGCACCAAGGTGCCCGGCGCGAG
GCGCTCCAACTCGCGAGAAAATACGACGGTGGTCGCTAGCATCGGCGCCG
ACGGCCACACCTACTACCCTATCATCATCTACAAAGGCCAGCGTATGCAA
CCCGCTTGGATCCAGGACAAGAACGGCGTCCCCGACGCGAAGTACACCGT
CACGGAGTCATCCTTCATCCAGAGCCACGTGTTCCTCGACTACCTTCGAG
ACCTCCGCGAACAGCTCGATGCACGCGGCTTGGAGGGAAAAGTTGCCCTT
GTGCTCGACGGCCACGCCTCGCACACGACCTTCGACGCCATTAGCTTGGC
CATATCTCTGGACATCGACCTCTTCCAGCTCCCGTNN
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