EsuBft112_29a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft112_29a-0001
Unique Name	EsuBft112_29a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_213	contig	Scaffold_213:602310..605068 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft112_29
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	266
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft112_29a	EsuBft112_29a	Ectocarpus subulatus male Bft15b	gene	Scaffold_213 602310..605068 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft112_29a-0001-exon	EsuBft112_29a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_213 602310..603176 -
EsuBft112_29a-0001-exon	agat-exon-7493	Ectocarpus subulatus male Bft15b	exon	Scaffold_213 603267..605068 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft112_29a-0001-exon	agat-three_prime_utr-1242	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_213 602310..602649 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft112_29a-0001-cds	EsuBft112_29a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_213 602650..603176 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft112_29a-0001-exon	agat-five_prime_utr-786	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_213 604366..605068 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft112_29a-0001	EsuBft112_29	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_213 602650..604365 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_213:602310..605068-
coding sequence from alignment at Scaffold_213:602310..605068-

spliced messenger RNA

>EsuBft112_29a-0001 ID=EsuBft112_29a-0001|Name=EsuBft112_29a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2669bp|location=Sequence derived from alignment at Scaffold_213:602310..605068- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GGGGGGGGGGGGGCGGCGACAAGTGCCATACAGAGCAGACCGTGACACCA
CCTGCGCCTCCTCGCCCTGAACCAAGACGTGGACGGACATGCAGTCCCGC
TGAAGGAAAAGCGACACCAAGGAGGACGCGCCACCCACGTAGTCGCCCCC
CACGAACTCCGTCGAACCCTGTTAATGGTAGCAGCGGGGGGGGGTCTACG
GCTACTTGTCAACGGGGAGGCGGCCTGGGCACCGCTTCACCAGAGGCTGC
ACCCGCAAGTACGCCTGGCGTCGCAACTAAGCGGTGCGCGTGGCCGAGAC
CCGGGAAGCCGTACAGGATCCGGTAGGAAACGCAGAAAGAGACGGACGCT
GGGGCAGAGGCGGCGAGCCGTCTTTGAGGGGAGGATGGCAGACGAGGAGT
ACAGTGAGCAGCAAAAAGGAGACGAGGCAACAGGCTATGGTCCGCAGAGA
TTGAGAGATTGCCGAAGCTGAACGTGAGAAGTTGGAGTCTGGAGGCAAGC
GGACAGTTGAATTCCGGCGTCGAAGTTGGGGTGGAAACCTTGCAACAGCT
GGCTCTCGCTCCGTCAAGCGGAGTGCAGCGCGAAGACAGTCTGATCCTGG
AGTTAGGAATACTCAGATCGGAGCCGAGAAAAAAACACGCAAGAAACCTT
GTAGGCGTGCGGAGTGCGGTTGGTTCAAAAACAACCCGGGTCTCGAATGC
AGCATGTGCCCCTCAGGCGTAGTGCACGCCGTCAGTGACAAGCTATGCTC
CGCATGCCATAGGTCGGAGGGCTTGGCTGGCTTCACGCGCCTCAGAGGGC
CACGGCTTGAACGAGCGACACGGTTGTTTTTGGCCGAGTACCAAGAAGGA
GAGGGGGAGCTGCCTCTACCTCTCGTGCGAGGATTTTGTCCCAGCAACGA
CTGCATTTGCCATCGCCGAGATTGTTTCTACGGTTTTCTTCTCGAGAGGG
AAGCAAAGCCGGAGCTCCGAACATGTAGCGTGTGCAAGAGAGGGTACCCT
GTGAAGGACCAGAAGAGGTGGTACAGTGTGGACGTCGTGGACGATAACAT
AACGGAGGGTGGTGGATCAGGACGCACACAAGCTTGGTACTGCCAGGCCT
GCAATCAAGCTCGAATCCGGGCCATCGGAGAAGCTACTCAAAAAAAAGTT
GCGGCATCGAGCAACTCGGGCCGACCTAAAGCCGATGAACCGGCGCCGGA
GAAGCCGTTCAGCCGGGTGCGCGCGTTGGTGATTAAAGCCGTAGCTCGCG
GGGACATCCTTTACTGGGAGGATGTGTTCGACTGGCTCTCAGCTGAGCGC
GCAAAGGATGGTGACCAAGAACTTGAGCGTAGGAGCGGGCGGAAGGCCGT
GCGCCAGATGTTCGAGAGCATCGCGAGCGCTGATGGGAGCCAAGCGCGGG
TGGTCAGCAGCGAGGGGGGCTTTGGAGACGGGCGCCAACGACTACTGTGT
CTCTTCCCGGTCAACGCTCGGGACGAGGTTATCGCATCCCTCGCCCTACG
GGCGCGCCTGGCGAACACGTTCGATGGTCCGAGCACGCCCGCAAACGCCA
CGTCCGGTGGAAATACGTCCCTGCAGATAGTGAGGCGTCTTCTCGAAGAA
GGGAACGAGGCAGACGCGAAGATGGAGATCGTGCGTGCGGCGGCGGAGAT
TGTTCGGGCCGATGTCGATCAACATCCAGATCTCAAGAATGCCCGCATCC
GACGGCAAAAGCACAAGTACAGCGTGGAGTTGGCCGCACCCGTGAAACCA
GTGCGAGATGCCCTAGCTGAGATGCCCCCGACATTGGTTGGACTCTTCCA
AGACGGTCCACAGCCAAGCGCAGCGGGGAGTGTACGGCGAGAGGATGATG
GGAGCGATGCAGCCGACGCGCTTGAAGGAGCCGCCTGTGAGCGGCAAGCC
CCCACTCGCGATGCCTCCCGGGCAGAAAAGGTGGATTCTGTTGGGCCGAC
TTCCGAGGCAGCTTCCACTTTCATCGAAAAAAACAACCAGGATAGGCGAG
GCTTCGCACGGCGTTTGTACATACTTTGCAAGTGCACGGTGAAGGTGATT
TTTCCTGGTCGACACTTGACAGCGGCCATGGTCGACTACGTGGACCTCAT
CCGAGTAGCCATCGTCAAGATTGGCAAGAAGAGGACGACAGACACCTGCC
CGACTTATAGGTCGATGCGCGAGCAATGCCTGAGGATGAAGTCTGTCGAC
GGGTACTGGCAAGATGGATTCAAAGACCACATGCCAGAACGAGACTTCAA
CGGAAAGGGTTGGGGTATCAACCCCAAGGCGAAGGGCAGCAACGCGTCAG
CACTCACAGGAGAGAATTGCGTTATGTGAATGTCGGAGCATTCTTACATC
GGTTCCGATGGGAAAATGGTCACGATGACGTGCGGTTGCGACCCGGTGAA
GGCCTTAAAGCATAACTGTAGGGGGTGCGGGTGCAAAGGGCGCAAGTGCT
CCCTCGCTTGCGGCTGCAGGGGCCGTTGCCATTTCGCTCGCAAACCTGTA
TACCCGGTGCACCGACCGGCCAGGCCACGTATTCCGGTCCTGCCGGTGCT
GCACTCCGCAGTCGTTGCCAGCGCCATGACGGCTCTTCTGGCGTCCCGGA
ACGCTAGAACGGACGAGGAAGAGGAAGACCCGGACGATCCCGGTTCGGAC
GATGACGACACCGGCCGTT

protein sequence of EsuBft112_29a-0001

>EsuBft112_29 ID=EsuBft112_29|Name=EsuBft112_29a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=541bp
MCPSGVVHAVSDKLCSACHRSEGLAGFTRLRGPRLERATRLFLAEYQEGE
GELPLPLVRGFCPSNDCICHRRDCFYGFLLEREAKPELRTCSVCKRGYPV
KDQKRWYSVDVVDDNITEGGGSGRTQAWYCQACNQARIRAIGEATQKKVA
ASSNSGRPKADEPAPEKPFSRVRALVIKAVARGDILYWEDVFDWLSAERA
KDGDQELERRSGRKAVRQMFESIASADGSQARVVSSEGGFGDGRQRLLCL
FPVNARDEVIASLALRARLANTFDGPSTPANATSGGNTSLQIVRRLLEEG
NEADAKMEIVRAAAEIVRADVDQHPDLKNARIRRQKHKYSVELAAPVKPV
RDALAEMPPTLVGLFQDGPQPSAAGSVRREDDGSDAADALEGAACERQAP
TRDASRAEKVDSVGPTSEAASTFIEKNNQDRRGFARRLYILCKCTVKVIF
PGRHLTAAMVDYVDLIRVAIVKIGKKRTTDTCPTYRSMREQCLRMKSVDG
YWQDGFKDHMPERDFNGKGWGINPKAKGSNASALTGENCVM

mRNA from alignment at Scaffold_213:602310..605068-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft112_29a-0001 ID=EsuBft112_29a-0001|Name=EsuBft112_29a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2759bp|location=Sequence derived from alignment at Scaffold_213:602310..605068- (Ectocarpus subulatus male Bft15b)
GGGGGGGGGGGGGCGGCGACAAGTGCCATACAGAGCAGACCGTGACACCA
CCTGCGCCTCCTCGCCCTGAACCAAGACGTGGACGGACATGCAGTCCCGC
TGAAGGAAAAGCGACACCAAGGAGGACGCGCCACCCACGTAGTCGCCCCC
CACGAACTCCGTCGAACCCTGTTAATGGTAGCAGCGGGGGGGGGTCTACG
GCTACTTGTCAACGGGGAGGCGGCCTGGGCACCGCTTCACCAGAGGCTGC
ACCCGCAAGTACGCCTGGCGTCGCAACTAAGCGGTGCGCGTGGCCGAGAC
CCGGGAAGCCGTACAGGATCCGGTAGGAAACGCAGAAAGAGACGGACGCT
GGGGCAGAGGCGGCGAGCCGTCTTTGAGGGGAGGATGGCAGACGAGGAGT
ACAGTGAGCAGCAAAAAGGAGACGAGGCAACAGGCTATGGTCCGCAGAGA
TTGAGAGATTGCCGAAGCTGAACGTGAGAAGTTGGAGTCTGGAGGCAAGC
GGACAGTTGAATTCCGGCGTCGAAGTTGGGGTGGAAACCTTGCAACAGCT
GGCTCTCGCTCCGTCAAGCGGAGTGCAGCGCGAAGACAGTCTGATCCTGG
AGTTAGGAATACTCAGATCGGAGCCGAGAAAAAAACACGCAAGAAACCTT
GTAGGCGTGCGGAGTGCGGTTGGTTCAAAAACAACCCGGGTCTCGAATGC
AGCATGTGCCCCTCAGGCGTAGTGCACGCCGTCAGTGACAAGCTATGCTC
CGCATGCCATAGGTCGGAGGGCTTGGCTGGCTTCACGCGCCTCAGAGGGC
CACGGCTTGAACGAGCGACACGGTTGTTTTTGGCCGAGTACCAAGAAGGA
GAGGGGGAGCTGCCTCTACCTCTCGTGCGAGGATTTTGTCCCAGCAACGA
CTGCATTTGCCATCGCCGAGATTGTTTCTACGGTTTTCTTCTCGAGAGGG
AAGCAAAGCCGGAGCTCCGAACATGTAGCGTGTGCAAGAGAGGGTACCCT
GTGAAGGACCAGAAGAGGTGGTACAGTGTGGACGTCGTGGACGATAACAT
AACGGAGGGTGGTGGATCAGGACGCACACAAGCTTGGTACTGCCAGGCCT
GCAATCAAGCTCGAATCCGGGCCATCGGAGAAGCTACTCAAAAAAAAGTT
GCGGCATCGAGCAACTCGGGCCGACCTAAAGCCGATGAACCGGCGCCGGA
GAAGCCGTTCAGCCGGGTGCGCGCGTTGGTGATTAAAGCCGTAGCTCGCG
GGGACATCCTTTACTGGGAGGATGTGTTCGACTGGCTCTCAGCTGAGCGC
GCAAAGGATGGTGACCAAGAACTTGAGCGTAGGAGCGGGCGGAAGGCCGT
GCGCCAGATGTTCGAGAGCATCGCGAGCGCTGATGGGAGCCAAGCGCGGG
TGGTCAGCAGCGAGGGGGGCTTTGGAGACGGGCGCCAACGACTACTGTGT
CTCTTCCCGGTCAACGCTCGGGACGAGGTTATCGCATCCCTCGCCCTACG
GGCGCGCCTGGCGAACACGTTCGATGGTCCGAGCACGCCCGCAAACGCCA
CGTCCGGTGGAAATACGTCCCTGCAGATAGTGAGGCGTCTTCTCGAAGAA
GGGAACGAGGCAGACGCGAAGATGGAGATCGTGCGTGCGGCGGCGGAGAT
TGTTCGGGCCGATGTCGATCAACATCCAGATCTCAAGAATGCCCGCATCC
GACGGCAAAAGCACAAGTACAGCGTGGAGTTGGCCGCACCCGTGAAACCA
GTGCGAGATGCCCTAGCTGAGATGCCCCCGACATTGGTTGGACTCTTCCA
AGGTATGACGAACATGCCCCTGTACCCCGAGATTACCGATATAGGGAGTG
AGGATCCCGGCCGGGGCTGGGCGTGGGATGAAACAAAAACAGACGGTCCA
CAGCCAAGCGCAGCGGGGAGTGTACGGCGAGAGGATGATGGGAGCGATGC
AGCCGACGCGCTTGAAGGAGCCGCCTGTGAGCGGCAAGCCCCCACTCGCG
ATGCCTCCCGGGCAGAAAAGGTGGATTCTGTTGGGCCGACTTCCGAGGCA
GCTTCCACTTTCATCGAAAAAAACAACCAGGATAGGCGAGGCTTCGCACG
GCGTTTGTACATACTTTGCAAGTGCACGGTGAAGGTGATTTTTCCTGGTC
GACACTTGACAGCGGCCATGGTCGACTACGTGGACCTCATCCGAGTAGCC
ATCGTCAAGATTGGCAAGAAGAGGACGACAGACACCTGCCCGACTTATAG
GTCGATGCGCGAGCAATGCCTGAGGATGAAGTCTGTCGACGGGTACTGGC
AAGATGGATTCAAAGACCACATGCCAGAACGAGACTTCAACGGAAAGGGT
TGGGGTATCAACCCCAAGGCGAAGGGCAGCAACGCGTCAGCACTCACAGG
AGAGAATTGCGTTATGTGAATGTCGGAGCATTCTTACATCGGTTCCGATG
GGAAAATGGTCACGATGACGTGCGGTTGCGACCCGGTGAAGGCCTTAAAG
CATAACTGTAGGGGGTGCGGGTGCAAAGGGCGCAAGTGCTCCCTCGCTTG
CGGCTGCAGGGGCCGTTGCCATTTCGCTCGCAAACCTGTATACCCGGTGC
ACCGACCGGCCAGGCCACGTATTCCGGTCCTGCCGGTGCTGCACTCCGCA
GTCGTTGCCAGCGCCATGACGGCTCTTCTGGCGTCCCGGAACGCTAGAAC
GGACGAGGAAGAGGAAGACCCGGACGATCCCGGTTCGGACGATGACGACA
CCGGCCGTT

Coding sequence (CDS) from alignment at Scaffold_213:602310..605068-

>EsuBft112_29a-0001 ID=EsuBft112_29a-0001|Name=EsuBft112_29a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1626bp|location=Sequence derived from alignment at Scaffold_213:602310..605068- (Ectocarpus subulatus male Bft15b)
ATGTGCCCCTCAGGCGTAGTGCACGCCGTCAGTGACAAGCTATGCTCCGC
ATGCCATAGGTCGGAGGGCTTGGCTGGCTTCACGCGCCTCAGAGGGCCAC
GGCTTGAACGAGCGACACGGTTGTTTTTGGCCGAGTACCAAGAAGGAGAG
GGGGAGCTGCCTCTACCTCTCGTGCGAGGATTTTGTCCCAGCAACGACTG
CATTTGCCATCGCCGAGATTGTTTCTACGGTTTTCTTCTCGAGAGGGAAG
CAAAGCCGGAGCTCCGAACATGTAGCGTGTGCAAGAGAGGGTACCCTGTG
AAGGACCAGAAGAGGTGGTACAGTGTGGACGTCGTGGACGATAACATAAC
GGAGGGTGGTGGATCAGGACGCACACAAGCTTGGTACTGCCAGGCCTGCA
ATCAAGCTCGAATCCGGGCCATCGGAGAAGCTACTCAAAAAAAAGTTGCG
GCATCGAGCAACTCGGGCCGACCTAAAGCCGATGAACCGGCGCCGGAGAA
GCCGTTCAGCCGGGTGCGCGCGTTGGTGATTAAAGCCGTAGCTCGCGGGG
ACATCCTTTACTGGGAGGATGTGTTCGACTGGCTCTCAGCTGAGCGCGCA
AAGGATGGTGACCAAGAACTTGAGCGTAGGAGCGGGCGGAAGGCCGTGCG
CCAGATGTTCGAGAGCATCGCGAGCGCTGATGGGAGCCAAGCGCGGGTGG
TCAGCAGCGAGGGGGGCTTTGGAGACGGGCGCCAACGACTACTGTGTCTC
TTCCCGGTCAACGCTCGGGACGAGGTTATCGCATCCCTCGCCCTACGGGC
GCGCCTGGCGAACACGTTCGATGGTCCGAGCACGCCCGCAAACGCCACGT
CCGGTGGAAATACGTCCCTGCAGATAGTGAGGCGTCTTCTCGAAGAAGGG
AACGAGGCAGACGCGAAGATGGAGATCGTGCGTGCGGCGGCGGAGATTGT
TCGGGCCGATGTCGATCAACATCCAGATCTCAAGAATGCCCGCATCCGAC
GGCAAAAGCACAAGTACAGCGTGGAGTTGGCCGCACCCGTGAAACCAGTG
CGAGATGCCCTAGCTGAGATGCCCCCGACATTGGTTGGACTCTTCCAAGA
CGGTCCACAGCCAAGCGCAGCGGGGAGTGTACGGCGAGAGGATGATGGGA
GCGATGCAGCCGACGCGCTTGAAGGAGCCGCCTGTGAGCGGCAAGCCCCC
ACTCGCGATGCCTCCCGGGCAGAAAAGGTGGATTCTGTTGGGCCGACTTC
CGAGGCAGCTTCCACTTTCATCGAAAAAAACAACCAGGATAGGCGAGGCT
TCGCACGGCGTTTGTACATACTTTGCAAGTGCACGGTGAAGGTGATTTTT
CCTGGTCGACACTTGACAGCGGCCATGGTCGACTACGTGGACCTCATCCG
AGTAGCCATCGTCAAGATTGGCAAGAAGAGGACGACAGACACCTGCCCGA
CTTATAGGTCGATGCGCGAGCAATGCCTGAGGATGAAGTCTGTCGACGGG
TACTGGCAAGATGGATTCAAAGACCACATGCCAGAACGAGACTTCAACGG
AAAGGGTTGGGGTATCAACCCCAAGGCGAAGGGCAGCAACGCGTCAGCAC
TCACAGGAGAGAATTGCGTTATGTGA