EsuBft112_28a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft112_28a-0001
Unique NameEsuBft112_28a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_213contigScaffold_213:598280..598607 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft112_28
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length32
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft112_28aEsuBft112_28aEctocarpus subulatus male Bft15bgeneScaffold_213 598280..598607 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft112_28a-0001-exonEsuBft112_28a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_213 598280..598607 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft112_28a-0001-cdsEsuBft112_28a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_213 598280..598429 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft112_28a-0001-exonagat-three_prime_utr-1241Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_213 598430..598607 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft112_28a-0001EsuBft112_28Ectocarpus subulatus male Bft15bpolypeptideScaffold_213 598280..598429 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft112_28a-0001 ID=EsuBft112_28a-0001|Name=EsuBft112_28a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=328bp|location=Sequence derived from alignment at Scaffold_213:598280..598607+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAACTGGCAGACCAGTTGAACACACTTCCAACCTACGTCCGCAAGCA
GTTTTCTCGCCGTGAATTTGCTTTCAGCTCGAGATTTACTTCATACAGCA
GCGGCTACGGTTTAAGAGAGGGTCGGTACAAGCCAATTTCACTCTCTTAA
ATCCGGCTTTCTGTTATATCGTGTTGGCTACGGTATAAGAGAGAATTCTC
TTAAACAGTATCTCACTATAAGAGAATATTCTCTTGTATCGTAGACAAAA
CTAAAGGTCGTGAAACAGGGACTCTCGCGCACTGACTACACTCGAATGCC
AAAATAGGTCATGAAGAGAGCGTATCAT
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protein sequence of EsuBft112_28a-0001

>EsuBft112_28 ID=EsuBft112_28|Name=EsuBft112_28a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=49bp
MKLADQLNTLPTYVRKQFSRREFAFSSRFTSYSSGYGLREGRYKPISLS
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mRNA from alignment at Scaffold_213:598280..598607+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft112_28a-0001 ID=EsuBft112_28a-0001|Name=EsuBft112_28a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=328bp|location=Sequence derived from alignment at Scaffold_213:598280..598607+ (Ectocarpus subulatus male Bft15b)
ATGAAACTGGCAGACCAGTTGAACACACTTCCAACCTACGTCCGCAAGCA
GTTTTCTCGCCGTGAATTTGCTTTCAGCTCGAGATTTACTTCATACAGCA
GCGGCTACGGTTTAAGAGAGGGTCGGTACAAGCCAATTTCACTCTCTTAA
ATCCGGCTTTCTGTTATATCGTGTTGGCTACGGTATAAGAGAGAATTCTC
TTAAACAGTATCTCACTATAAGAGAATATTCTCTTGTATCGTAGACAAAA
CTAAAGGTCGTGAAACAGGGACTCTCGCGCACTGACTACACTCGAATGCC
AAAATAGGTCATGAAGAGAGCGTATCAT
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Coding sequence (CDS) from alignment at Scaffold_213:598280..598607+

>EsuBft112_28a-0001 ID=EsuBft112_28a-0001|Name=EsuBft112_28a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=150bp|location=Sequence derived from alignment at Scaffold_213:598280..598607+ (Ectocarpus subulatus male Bft15b)
ATGAAACTGGCAGACCAGTTGAACACACTTCCAACCTACGTCCGCAAGCA
GTTTTCTCGCCGTGAATTTGCTTTCAGCTCGAGATTTACTTCATACAGCA
GCGGCTACGGTTTAAGAGAGGGTCGGTACAAGCCAATTTCACTCTCTTAA
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