EsuBft112_23a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft112_23a-0001
Unique NameEsuBft112_23a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_213contigScaffold_213:557269..560154 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog36331.EPrPI00000017314
ProteomeIdEsuBft112_23
Protein domainsIPR018793
Ownerapollo_admin@sb-roscoff.fr
NotecytoScaffold_ome c oxidase assembly factor 5 os:mus musculus gn:coa5 pe:2 sv:1 [Automatic annotation]
Nb exon3
Max annot lvl121069|Pythiales
Length981
Hectar predicted targeting categoryother localisation
Evalue2.27e-14
EggNOG OGsKOG4114@1|root,KOG4114@2759|Eukaryota,1MHXH@121069|Pythiales
Ec32 ortholog descriptionCytochrome c oxidase assembly protein PET191
Ec32 orthologEc-07_001660.1
Date last modified2016-06-14
Date creation2016-06-14
Descriptioncytochrome c oxidase assembly protein. Source PGD
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft112_23aEsuBft112_23aEctocarpus subulatus male Bft15bgeneScaffold_213 557269..560154 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft112_23a-0001EsuBft112_23Ectocarpus subulatus male Bft15bpolypeptideScaffold_213 557947..559084 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft112_23a-0001-exonagat-exon-7475Ectocarpus subulatus male Bft15bexonScaffold_213 557269..558040 -
EsuBft112_23a-0001-exonEsuBft112_23a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_213 558334..558374 -
EsuBft112_23a-0001-exonagat-exon-7476Ectocarpus subulatus male Bft15bexonScaffold_213 559016..559126 -
EsuBft112_23a-0001-exonagat-exon-7474Ectocarpus subulatus male Bft15bexonScaffold_213 560098..560154 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft112_23a-0001-exonagat-three_prime_utr-1234Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_213 557269..557946 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft112_23a-0001-cdsEsuBft112_23a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_213 557947..558040 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft112_23a-0001-exonagat-five_prime_utr-781Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_213 559085..559126 -
EsuBft112_23a-0001-exonagat-five_prime_utr-782Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_213 560098..560154 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft112_23a-0001 ID=EsuBft112_23a-0001|Name=EsuBft112_23a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=981bp|location=Sequence derived from alignment at Scaffold_213:557269..560154- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CGTGTCCACGAACCAAACATTTCCAGAAGGGGGGGACGGCACACCACGTG
AGAGGAGATTCCACAGGGAGGTGTTTTTGCTCTGGACGACAAGCAAACGA
TGGGGAGGGATTGCAAGGAGGCCGCGCGGGCTCTTTACGCCTGCATGAAA
AAGACTCAATGCATGAAGGATGGAGGCCGCCTGAAGGAATGCCTTAAAAC
ATCCGACAGGGAGTTCTGCAGGCTGGATCACCAGTCGTTTTTTGAGTGCA
AGCGCGGCCAGCTAGACATGAGGACGAGAATACGGGGAGAGCGGTCTTTC
TGACACGCGCTCGGGCGAGGGTTGGGCAGCAAGCGGAAGCTAGATTCCAG
GGTCTCTTTCGAACACGCGTTGCGACGAACGAAGGGCCGCGGGTGTTTCT
CACTTTCATGAGACATGCCTCTGTGTGAAGAAGGCATTTTTCCAGTGGGG
GGCTGTGAGTCGTTGATGTCGGCAGGAAAATGGTTGCAGGGTCTCCGGTG
GCCGTGTTTTGTTTTTTCGTGTCTTGGGCAACGCGTTGTTATTGCCCTTT
TGTTGGAGTCCGGTTCTGGTGACCATCAGACCTCTTCGCAGGTGCAGTTG
GCTGGTTGCGAGGGAGCTGCTGTCGCGGGACGTATAAATGTCATTTTTTT
TTTCAATAGCGCGTGAGATATACTTCGGGTACCAGGATAGCGGCATCGGG
GGTAGGGGTGTGGCACTGGAATATAACGAGAGAACAGCCGTGGCGCTAGA
TAATTCACGTATTTCCTATGCCTAAAATTTCGAGCCCCCCACATGTTTGT
AGGTATGCATATGTGTGGGGCAAAATGGCATGGTCGGCGTGAACCGGCAG
TGAACACGCCTAGACCGTTGTGGACAAAGGTTGTGATCATCCCCCCCACA
TATTTTTAGGTATGCATATGTGTGGGCAAAATGGCATGGTCGGTGTGAAC
CGGCAGTGAACACGCCTAGACCGTTGTGGAC
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protein sequence of EsuBft112_23a-0001

>EsuBft112_23 ID=EsuBft112_23|Name=EsuBft112_23a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=67bp
MGRDCKEAARALYACMKKTQCMKDGGRLKECLKTSDREFCRLDHQSFFEC
KRGQLDMRTRIRGERSF
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mRNA from alignment at Scaffold_213:557269..560154-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft112_23a-0001 ID=EsuBft112_23a-0001|Name=EsuBft112_23a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2886bp|location=Sequence derived from alignment at Scaffold_213:557269..560154- (Ectocarpus subulatus male Bft15b)
CGTGTCCACGAACCAAACATTTCCAGAAGGGGGGGACGGCACACCACGTG
AGAGGAGGTCAGAGCTAGTGCACGTATGGCATTGTGCGTAATCGCGTGCA
ACATCGCGGTTTGTTTGCCTCGCGGTCGCTGCTTGTCTGATGACGGAGTC
CACCGTGATCATCAGCGTCACACGACGAGTATGCTGTAGTGCAGTATCGA
ACGCGCCGGTACCACCTTCAAACCAGCGGGGCATGTGTAAAGCAGAAGTG
CACGATGTAGCGCCTGTTCCTCGTTGACTTTCCGCACTAGTGATTTTTTA
GCGCAGTATTGTCCACCGTCTGTTGTTGTCAATGTGTTGGACAATGACTC
TTCTCGCGTTGAGTGCTCAGCATGGGCAACAGAACGAGGTACAGCAGTAG
TCCTACAATCTACCGATCGCACCACACCGCACATGAGCGGCACATTAGTG
CCCTTTCGACTTTGTTGTACACTTGTATCAACAGGGAACCCCGCCCATTT
GTACCCTTTCCTGGCGGTTTCACTGGCGGCGCCTCTACAGCAGCAGAACG
AATGGGGAAGAGAGGGGGCTCCACCCTACGCAATCATTTCGTGTGCAACA
GCAGTGCAAGTCCTTTATCACAGTAACGACGGCAGGCAGGTGCCACCTGG
TGAAGTGCGCCTGTTTCCAGCAGGATGTCTGACACAAGCCCCCGCTTCAA
ATTCATAACCTCAAACCCACAACAGCCAAAACATCAGAGGCTGTGATCCC
GGCGTCGCACAGTTTCGAAAGCGCCTGTCCGTGAACATGCAACACCCGGC
GTAAACGAGGGAGGGTTGCTGCTGGTGCGAGTCATCTCGCGTGAAGAGCA
TAGTTCTCTGCAATTGTTTTCACCATGGGCAAGATAAATTTAGAAAAGGA
ACAGCGTGGGGCAGACGCGCACACGCCAAGAGTTTAGGCAGCTGAGTCAA
AGATGAAGCCGCTTCGTGGTGTGAACGCCCAGAATGCTGCTGTCTCCCGG
GTCCGCATTAACTGCTGTGCCGTATCAGATTCCACAGGGAGGTGTTTTTG
CTCTGGACGACAAGCAAACGATGGGGAGGGATTGCAAGGAGGCCGCGCGG
GCTCTTTACGCCTGCATGAAAAAGACTCAATGCATGAAGGTAGGCACACA
CAACGTAGCTCTTCACCCCAGTGATACTATGCCACATCGCGCCCATGACT
CCGCACTGACAAGTGCTCTTGTCGCAAGGCTGGTGTATGTACTCGACAGC
CGAATCTTTGGCGATCCGATACCTGGTTGCGTTTGGAAAAGAGCGACGGT
CCACACCCGCTGGGTGTGCTGTGCTTTGCCAAAAATGCCCGAACCTGCTC
TGCCCTGCGTTATTTTCCCCTATTGGATCCCTTCAACGCTTGGGCATTTC
CTTGTGACAAGTCATGGCGACATCTACTGGGTCAGATGGCAGCAATCTTA
TGATAGGTTGAAAGAGAAGGAAGCACGCATGTCGAAGAACCGGTAGCTTT
GCATTGGGCGAAGGAAAGCACGGCGAGCAGTTAGTTCGGCTGACGCTGTG
ATTTCGTGCAGGCAGTTTGCGTGCTGGTGCCGCTTCACCCATCCTCTAAA
GTACGCAGACTGTGTGGTCTTCAACACCAGTATCGATCTCGCATTTCTCA
AGCCCTTCCTCGAAGCCAGGGTGCTCTGCCTTCCTCGTGTATGTGATGAA
GAACGCGCCCACCTCTCTCGCTCGCTCCACTTGCCTCCCCCTCGCTCGCG
TGGCGCCTCCTCTCGGTCGTCTGTCCACAGGATGGAGGCCGCCTGAAGGA
ATGCCTTAAAACATCCGACAGGTTCGTGGCGAATGCTCGATGGGGAGGAG
GGCGGGGTAGGGGGGGGTGCTGCTTTTGTAGGCCATCCATCGTCGGTTGC
GACTTTCTAGTTTCATCTTTGTGCCACGTTAGAGGGCAGTGTGGATTTCT
TGGAGTCTATCCAGCACGACCCCGCCGTGGCGTTGAGTGGCCTTTCGTGC
ACGTCCACCCATTTCCAAGCTTTCAAGAATAGGGGATTTGGTGCTCCAAG
TGACTCCCCAACGAGACTATTTCCCGTTCAAATATTGTGCTCATTCGTGT
CCACAAAACCGCAGGGAGTTCTGCAGGCTGGATCACCAGTCGTTTTTTGA
GTGCAAGCGCGGCCAGCTAGACATGAGGACGAGAATACGGGGAGAGCGGT
CTTTCTGACACGCGCTCGGGCGAGGGTTGGGCAGCAAGCGGAAGCTAGAT
TCCAGGGTCTCTTTCGAACACGCGTTGCGACGAACGAAGGGCCGCGGGTG
TTTCTCACTTTCATGAGACATGCCTCTGTGTGAAGAAGGCATTTTTCCAG
TGGGGGGCTGTGAGTCGTTGATGTCGGCAGGAAAATGGTTGCAGGGTCTC
CGGTGGCCGTGTTTTGTTTTTTCGTGTCTTGGGCAACGCGTTGTTATTGC
CCTTTTGTTGGAGTCCGGTTCTGGTGACCATCAGACCTCTTCGCAGGTGC
AGTTGGCTGGTTGCGAGGGAGCTGCTGTCGCGGGACGTATAAATGTCATT
TTTTTTTTCAATAGCGCGTGAGATATACTTCGGGTACCAGGATAGCGGCA
TCGGGGGTAGGGGTGTGGCACTGGAATATAACGAGAGAACAGCCGTGGCG
CTAGATAATTCACGTATTTCCTATGCCTAAAATTTCGAGCCCCCCACATG
TTTGTAGGTATGCATATGTGTGGGGCAAAATGGCATGGTCGGCGTGAACC
GGCAGTGAACACGCCTAGACCGTTGTGGACAAAGGTTGTGATCATCCCCC
CCACATATTTTTAGGTATGCATATGTGTGGGCAAAATGGCATGGTCGGTG
TGAACCGGCAGTGAACACGCCTAGACCGTTGTGGAC
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Coding sequence (CDS) from alignment at Scaffold_213:557269..560154-

>EsuBft112_23a-0001 ID=EsuBft112_23a-0001|Name=EsuBft112_23a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=204bp|location=Sequence derived from alignment at Scaffold_213:557269..560154- (Ectocarpus subulatus male Bft15b)
ATGGGGAGGGATTGCAAGGAGGCCGCGCGGGCTCTTTACGCCTGCATGAA
AAAGACTCAATGCATGAAGGATGGAGGCCGCCTGAAGGAATGCCTTAAAA
CATCCGACAGGGAGTTCTGCAGGCTGGATCACCAGTCGTTTTTTGAGTGC
AAGCGCGGCCAGCTAGACATGAGGACGAGAATACGGGGAGAGCGGTCTTT
CTGA
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