EsuBft1126_13a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1126_13a-0001
Unique NameEsuBft1126_13a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_506contigScaffold_506:87579..91218 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FV35
ProteomeIdEsuBft1126_13
Protein domainsIPR027443
Protein domainsPTHR12366
Protein domainsIPR007803
Protein domainsSSF51197
Ownerapollo_admin@sb-roscoff.fr
Noteaspartyl asparaginyl beta-hydroxylase os:homo sapiens gn:asph pe:1 sv:3 [Automatic annotation]
Nb exon5
Max annot lvl2759|Eukaryota
Length1715
Hectar predicted targeting categoryother localisation
Evalue6.03e-212
EggNOG OGsCOG3555@1|root,KOG3696@2759|Eukaryota
Ec32 ortholog descriptionArginine/Asparagine/Proline hydroxylase
Ec32 orthologEc-12_005020.1
Date last modified2016-06-14
Date creation2016-06-14
Descriptionpeptide-aspartate beta-dioxygenase activity
COG categoryO
Cross References
External references for this mRNA
DatabaseAccession
GO0010522
GO0044093
GO2001257
GO0016706
GO0048522
GO0005783
EC1.14.11
GO0005488
GO1901019
GO0005515
GO0018193
GO0044707
GO0048856
GO0051050
GO0042221
GO0016021
GO0080090
GO0044767
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1126_13aEsuBft1126_13aEctocarpus subulatus male Bft15bgeneScaffold_506 87579..91218 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1126_13a-0001EsuBft1126_13Ectocarpus subulatus male Bft15bpolypeptideScaffold_506 88168..90775 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1126_13a-0001-exonagat-exon-82827Ectocarpus subulatus male Bft15bexonScaffold_506 87579..88304 -
EsuBft1126_13a-0001-exonagat-exon-82823Ectocarpus subulatus male Bft15bexonScaffold_506 88359..88363 -
EsuBft1126_13a-0001-exonagat-exon-82825Ectocarpus subulatus male Bft15bexonScaffold_506 89142..89304 -
EsuBft1126_13a-0001-exonEsuBft1126_13a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_506 89820..90198 -
EsuBft1126_13a-0001-exonagat-exon-82826Ectocarpus subulatus male Bft15bexonScaffold_506 90578..90916 -
EsuBft1126_13a-0001-exonagat-exon-82824Ectocarpus subulatus male Bft15bexonScaffold_506 91116..91218 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1126_13a-0001-exonagat-three_prime_utr-1182Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_506 87579..88167 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1126_13a-0001-cdsEsuBft1126_13a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_506 88168..88304 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1126_13a-0001-exonagat-five_prime_utr-749Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_506 90776..90916 -
EsuBft1126_13a-0001-exonagat-five_prime_utr-750Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_506 91116..91218 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1126_13a-0001 ID=EsuBft1126_13a-0001|Name=EsuBft1126_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1715bp|location=Sequence derived from alignment at Scaffold_506:87579..91218- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CACTCTGTCGCTGCCGTCGCTGTGACTGCTCTTCACGCTTCGTCCGGAAC
GATGTCGGCTTCCAGAATAGCTCTTGGAGCAGCGATGCTGGCCCCGATGG
CAAGCCCTGGGTTTTCTCGCTCCAATCTCCTTGCCACGTGGTACGTCCAA
CCCTGCTGGTACCATCAGCTCAGCAACAACAGCAATATCAGCAGCTGCGG
CAAGCAGCAGCAGCAGCAGACGAGCTCCTGGAACAGCAGTGAGCATGAGC
ACAAGAAACGAACCCCAGCAGAAACAGCAGCTGAAGGCTTTGGAGATGAC
CCCACGAAGAAAGCAGTTCTTCCGTATGGTGTCAGAGGGCCTCAAAGTTG
GTTTCGAGGGCGAGGACCTCTCCCGCGTGGAGAATTTCGTCCGCTATTGC
AAAGGGGAGCTCGAGTACAAGGCGCTGGGCCCGCTCCATCAGCCCAGCGA
GGAATATGTAGAGGGCCTCCGAGCCAAGCCGTGGTGGGAACCTCAGGAGT
TTGAGTGGATAAGCGAAATGGAGGAGAGGTCAAGCATCGTCATCGACGAG
TTCAAGGCGTTCTGGAACGACCCTTTGTCGGGGTTTGCGAAAGACAGCGT
CAACATGAACATCATGGGCAAGGGTTGGAGCGGTGTCCGCCTTCAGCGCC
TTGGCGAGTGGATACCGGAGAACTGCGAAAAGTTTCCCAAGACCGTCAAG
CTCCTTAAGGAGCTGAAGATTCCCCTGGCGGTGCGCGGAGTAATGTTCGC
GCGGCAGGTGCCCGGGAGCGGGGTGTCCCCGCACACGGACGGAAGAAATT
TCATTTTGACTACACATCTCGGGGTAGACGTACCGGAGGATTGCTGGATA
CGGGTTGGGGAGGAGAAAAGGAGTTGGGAGAACGGCAAGGCGCTGATCCT
GGACACAAGCTTCGAACACGAGACCCGCAACGACTCTCGGCGCGACAGAA
TCGTCCTGATCATCGACTACTGGCATCCAGGCATATGCCACCTCACGAAG
GCCGAGCAAGAAGCCCTGGCGTTCGTGTATGACCTCCGAAACAAGTTCGA
GTCCGGAGAGATACCGCTAGAGGAGCCGGAAGAGAAGGGCTTGTTCGGGG
CTTTCAAGCGGGCATTCCAACAGTAGACTGGACGCACACAGGAGGGCATC
AAATGTTTGTAGTGTGGATCGGTGGCGTTGTTGCTGATTTGTGTGTCGAT
GTCCTCCGGGGAACGCTGCACGAGTTTGACCAGGTCTACACTGCTATTGG
CGGAGATCAAGTGTCTCCTCTCAAGGGCCGACGCTGGTTGCCTTCGTGGC
AGGCGAAAACAACCGGCGTTCCCTCTAGTTTAGTTTGAAAGCTTGTTGAT
GCCGTACAGTCGTGGTCCCGGTTTAGCGGTTAGTTACCTCTCTGTTAAGC
GGGATGCCCCGAATAGTGGTTCCAAAATCTCGTGGCGAGTCTGCACATCG
GTAGTCAAAACTACAATATAACTGCCAATCCGGTTTAGCGGCGATGCCCT
TAATAGCGGTTAAAACATTTTGTGACACGATGGACCGTTGAACCGGGACC
ACGAGTGTAAACGCAACAACTGAAGTTGGACAGGTCCTTTGGTGCGCGAA
GAAGGTCGCTACCATCAGCTAGGTGGCTAGATGCATCACGGTTGAGCAGT
TCAGGTGGTTAACATGCTAGTGACCCACGGCGGTTGGATGACCTTTGGGA
CGAGATGCGATAATG
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protein sequence of EsuBft1126_13a-0001

>EsuBft1126_13 ID=EsuBft1126_13|Name=EsuBft1126_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=293bp
MSTRNEPQQKQQLKALEMTPRRKQFFRMVSEGLKVGFEGEDLSRVENFVR
YCKGELEYKALGPLHQPSEEYVEGLRAKPWWEPQEFEWISEMEERSSIVI
DEFKAFWNDPLSGFAKDSVNMNIMGKGWSGVRLQRLGEWIPENCEKFPKT
VKLLKELKIPLAVRGVMFARQVPGSGVSPHTDGRNFILTTHLGVDVPEDC
WIRVGEEKRSWENGKALILDTSFEHETRNDSRRDRIVLIIDYWHPGICHL
TKAEQEALAFVYDLRNKFESGEIPLEEPEEKGLFGAFKRAFQQ
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mRNA from alignment at Scaffold_506:87579..91218-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1126_13a-0001 ID=EsuBft1126_13a-0001|Name=EsuBft1126_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3640bp|location=Sequence derived from alignment at Scaffold_506:87579..91218- (Ectocarpus subulatus male Bft15b)
CACTCTGTCGCTGCCGTCGCTGTGACTGCTCTTCACGCTTCGTCCGGAAC
GATGTCGGCTTCCAGAATAGCTCTTGGAGCAGCGATGCTGGCCCCGATGG
CAAGTTCGACTTCCTCATGCGTTGGCGCCGAAGCCTAATTGTGTGTCAAA
CACGCCCGGTATTTGATCCATGAGTTTGTATCATGTGCTACCGCACATCC
AGCCGGGCGTACCAGAGCTGCGGGTCCTGAAACATGAGCTGTGTCATTAT
ACTTATCATCGTCCTGAGGTAACGCGCTATTCTCTCTGTGTTTCCTGCAC
AGGCCCTGGGTTTTCTCGCTCCAATCTCCTTGCCACGTGGTACGTCCAAC
CCTGCTGGTACCATCAGCTCAGCAACAACAGCAATATCAGCAGCTGCGGC
AAGCAGCAGCAGCAGCAGACGAGCTCCTGGAACAGCAGTGAGCATGAGCA
CAAGAAACGAACCCCAGCAGAAACAGCAGCTGAAGGCTTTGGAGATGACC
CCACGAAGAAAGCAGTTCTTCCGTATGGTGTCAGAGGGCCTCAAAGTTGG
TTTCGAGGGCGAGGACCTCTCCCGCGTGGAGAATTTCGTCCGCTATTGCA
AAGGGGAGCTCGAGTACAAGGCGCTGGGCCCGCTCCATCAGGTAGTTTTT
TGCGCTGGGGCTCATGTGCATAGTGCAGAGAAATGTTTCGGGGATGGATG
AGGACTCGGGCCTTTTAGCACAAGCTCTACCTGTTTGGTCCATGATGTCA
TCGAGGGTTTCGTCCACACCATTTTGGAGACGCGTGGTCATCCCATGTTC
GTACCAAAGCATTGCAATTCCGAGTGGTGAAGCGCGCCCTGCGGTTCGCG
ACTACCACTGTACAGTGTACTTTTAGCCTAACTGGTGTGCAGGTTCCACG
CCAGGTATTGGTGTGCAGGTTCCACGCCAGGTATCTGATTATGCCTTTAT
CGCAAATAACCATACTGTGGTCGTACTCAATCCTGTGCTCGTGGTCTCCC
GGATTTCCTACCTGTTCCAGCCCAGCGAGGAATATGTAGAGGGCCTCCGA
GCCAAGCCGTGGTGGGAACCTCAGGAGTTTGAGTGGATAAGCGAAATGGA
GGAGAGGTCAAGCATCGTCATCGACGAGTTCAAGGCGTTCTGGAACGACC
CTTTGTCGGGGTTTGCGAAAGACAGCGTCAACATGAACATCATGGGCAAG
GGTTGGAGCGGTGTCCGCCTTCAGCGCCTTGGCGAGTGGATACCGGAGAA
CTGCGAAAAGTTTCCCAAGACCGTCAAGCTCCTTAAGGAGCTGAAGATTC
CCCTGGCGGTGCGCGGAGTAATGTTCGCGCGGCAGGTGCCCGGGAGCGGG
GTGTCCCCGCACACGGACGGAAGAAATTTCATTTTGACTACACATCTCGG
TGAGCAACCAAGCAACCTGCGTTTCTCCCACCCTGCGATATGTAGCGCTG
CTACCTAAGCTCGCTGACATCGGTGTACGAGGACACAGCAGTGTGTTTAG
AGCGTGGTTGGAGAGTAGGAGTTTGTGTGTGTTTGACGCAACAGCCGGGG
TCGCATGGGAGGAAGGTACAGCACGAGGTGCTTTTTCGTTCTCTCTCCCC
TCCCGTCCCTGCGGCACTTGCTTTCAATTTGTAACGCGCCGTTTCATCCC
TCCTTTCTTGTTTACTCGCGACCATGTATGCGCTTGTCGCTCCTAAAATA
TGATTTTTCTGCCCTAGAGAGATTCGAACCTGCAAATCTAGAGAGCCAGA
AGGCTACACCGCTACTCAGTAGAACCATCGAGCTTGCTGTGTCAGGTCGC
AGTTTCAGCGCCGTGTTCAGGCCGCTACAGTAGTTTGTTCTAAAAGTAAA
TCTAACCCTACCTCACTAATGCACCCACTCAATCGATCGAATCGACCGGT
TGGGCCATCACCAGGGGTAGACGTACCGGAGGATTGCTGGATACGGGTTG
GGGAGGAGAAAAGGAGTTGGGAGAACGGCAAGGCGCTGATCCTGGACACA
AGCTTCGAACACGAGACCCGCAACGACTCTCGGCGCGACAGAATCGTCCT
GATCATCGACTACTGGCATCCAGGCATGTTTCCGCGGTCGCACTGCAGCG
CAGCGCCCCCACTTGACAACTTTGCAGCTAAGAAATAACAACCCGGGGAT
AGCCCCGGCCTTCAAATGAACCCCTTCCATTATTTTTTTTTTCCCGGGGA
GGAAGTCGTATATGTGTATAGTAAGGAGGGTGTTGGATCAGGTCGAACCA
AGAACGAGCCATACCTATTGGCTTCTGCCACCAACACCGCCATCAACGCC
AGACCACGCGGCGAGCAGAAAAAGAAACACTTTGCCCGCGGTTCTGATGG
AGAAGGAGAACGATGGGAAGTGCAATTTTGTTGCCAGGTGTTGCGTCGAA
ACAGATGCGGAAATGGCCACCAGCTACACCGTTCCATCACTGTGGAGCGA
GGACGTACGTGCACACTCGACCCAACCGTCTGCTGGGAGTGCGCGATCCT
GCTAGACGACGACATCGACGAAAATATTTGATATGCCCTCGAAAAACTCA
ACAGCTAGGAACTGGAGCACCATTTATGAGCCCGGTTCAGAACCCCTACG
CCAACACTTTTATGACGGCCATTTGGAGCACAACACCCTAGGAACTAAGA
ACCCCAGCATCGCCATAAACCAGAGGTTTTCTTTTGTGGGCGTTAGCTGT
ACTCTCCGTCCTGTTGTTGACCAGTGATGCCTGTGCAGGTGCTAGGTGTG
CGTGACGGCCGGTTGTCGACGCGCTGAGATACGATGCCTATGTTTTATTC
CTTGGCTTGTTCGATGAGTGAAGAGTTCAGCAGTACCAATCCGTGTTTCG
TATAGATGCCGTGGCCCCAATCATTTGCCTTTGTCCTGCGCCCGCGGTCG
CGCTCTCCCTGCAGACCTCACGAAGGCCGAGCAAGAAGCCCTGGCGTTCG
TGTATGACCTCCGAAACAAGTTCGAGTCCGGAGAGATACCGCTAGAGGAG
CCGGAAGAGAAGGGCTTGTTCGGGGCTTTCAAGCGGGCATTCCAACAGTA
GACTGGACGCACACAGGAGGGCATCAAATGTTTGTAGTGTGGATCGGTGG
CGTTGTTGCTGATTTGTGTGTCGATGTCCTCCGGGGAACGCTGCACGAGT
TTGACCAGGTCTACACTGCTATTGGCGGAGATCAAGTGTCTCCTCTCAAG
GGCCGACGCTGGTTGCCTTCGTGGCAGGCGAAAACAACCGGCGTTCCCTC
TAGTTTAGTTTGAAAGCTTGTTGATGCCGTACAGTCGTGGTCCCGGTTTA
GCGGTTAGTTACCTCTCTGTTAAGCGGGATGCCCCGAATAGTGGTTCCAA
AATCTCGTGGCGAGTCTGCACATCGGTAGTCAAAACTACAATATAACTGC
CAATCCGGTTTAGCGGCGATGCCCTTAATAGCGGTTAAAACATTTTGTGA
CACGATGGACCGTTGAACCGGGACCACGAGTGTAAACGCAACAACTGAAG
TTGGACAGGTCCTTTGGTGCGCGAAGAAGGTCGCTACCATCAGCTAGGTG
GCTAGATGCATCACGGTTGAGCAGTTCAGGTGGTTAACATGCTAGTGACC
CACGGCGGTTGGATGACCTTTGGGACGAGATGCGATAATG
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Coding sequence (CDS) from alignment at Scaffold_506:87579..91218-

>EsuBft1126_13a-0001 ID=EsuBft1126_13a-0001|Name=EsuBft1126_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=882bp|location=Sequence derived from alignment at Scaffold_506:87579..91218- (Ectocarpus subulatus male Bft15b)
ATGAGCACAAGAAACGAACCCCAGCAGAAACAGCAGCTGAAGGCTTTGGA
GATGACCCCACGAAGAAAGCAGTTCTTCCGTATGGTGTCAGAGGGCCTCA
AAGTTGGTTTCGAGGGCGAGGACCTCTCCCGCGTGGAGAATTTCGTCCGC
TATTGCAAAGGGGAGCTCGAGTACAAGGCGCTGGGCCCGCTCCATCAGCC
CAGCGAGGAATATGTAGAGGGCCTCCGAGCCAAGCCGTGGTGGGAACCTC
AGGAGTTTGAGTGGATAAGCGAAATGGAGGAGAGGTCAAGCATCGTCATC
GACGAGTTCAAGGCGTTCTGGAACGACCCTTTGTCGGGGTTTGCGAAAGA
CAGCGTCAACATGAACATCATGGGCAAGGGTTGGAGCGGTGTCCGCCTTC
AGCGCCTTGGCGAGTGGATACCGGAGAACTGCGAAAAGTTTCCCAAGACC
GTCAAGCTCCTTAAGGAGCTGAAGATTCCCCTGGCGGTGCGCGGAGTAAT
GTTCGCGCGGCAGGTGCCCGGGAGCGGGGTGTCCCCGCACACGGACGGAA
GAAATTTCATTTTGACTACACATCTCGGGGTAGACGTACCGGAGGATTGC
TGGATACGGGTTGGGGAGGAGAAAAGGAGTTGGGAGAACGGCAAGGCGCT
GATCCTGGACACAAGCTTCGAACACGAGACCCGCAACGACTCTCGGCGCG
ACAGAATCGTCCTGATCATCGACTACTGGCATCCAGGCATATGCCACCTC
ACGAAGGCCGAGCAAGAAGCCCTGGCGTTCGTGTATGACCTCCGAAACAA
GTTCGAGTCCGGAGAGATACCGCTAGAGGAGCCGGAAGAGAAGGGCTTGT
TCGGGGCTTTCAAGCGGGCATTCCAACAGTAG
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