EsuBft1126_12a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1126_12a-0001
Unique Name	EsuBft1126_12a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_506	contig	Scaffold_506:91397..98395 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	1437824.BN940_07986
ProteomeId	EsuBft1126_12
Protein domains	SignalP-TM
Protein domains	IPR019180
Owner	apollo_admin@sb-roscoff.fr
Nb exon	3
Max annot lvl	28216\|Betaproteobacteria
Length	103
Hectar predicted targeting category	mitochondrion
Evalue	4.32e-06
EggNOG OGs	2DR41@1\|root,33A2I@2\|Bacteria,1NJGU@1224\|Proteobacteria,2VXUT@28216\|Betaproteobacteria,3T506@506\|Alcaligenaceae
Ec32 ortholog description	Oxidoreductase-like, N-terminal
Ec32 ortholog	Ec-12_005000.1
Date last modified	2016-06-14
Date creation	2016-06-14
Description	Oxidoreductase-like protein, N-terminal
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1126_12a	EsuBft1126_12a	Ectocarpus subulatus male Bft15b	gene	Scaffold_506 91397..98395 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1126_12a-0001	EsuBft1126_12	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_506 91447..98098 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1126_12a-0001-exon	agat-exon-82822	Ectocarpus subulatus male Bft15b	exon	Scaffold_506 91397..92010 +
EsuBft1126_12a-0001-exon	EsuBft1126_12a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_506 92477..92538 +
EsuBft1126_12a-0001-exon	agat-exon-82821	Ectocarpus subulatus male Bft15b	exon	Scaffold_506 98041..98395 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1126_12a-0001-exon	agat-five_prime_utr-748	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_506 91397..91446 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1126_12a-0001-cds	EsuBft1126_12a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_506 91447..92010 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1126_12a-0001-exon	agat-three_prime_utr-1181	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_506 98099..98395 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_506:91397..98395+
coding sequence from alignment at Scaffold_506:91397..98395+

spliced messenger RNA

>EsuBft1126_12a-0001 ID=EsuBft1126_12a-0001|Name=EsuBft1126_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1031bp|location=Sequence derived from alignment at Scaffold_506:91397..98395+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTGGTGCCAGCGAACATACTCTCTTAAGCCGAGAGGAAGGTGTGTCTTGG
ATGTCCTTCGCCAGAGTTTCATTTGGGCCGTGTAAGCGGCCCCTTGCTGC
TAGAACCTGCTGCGTGGCACGTCGTGCGTCGGCTTCTTCTTCATGTCCTC
TGGCCGACGGGAGAAGGGAAGAACGGCGATCACCTCGCGCAAGAGCGAGC
GGTCCAGCAAAGCAGGGTCCGGGAGCGGTGCAATGCAGGAGACGGTATCA
CCGTTGGTCACCTCCCGGGGCGACCGACACCAACAGCGGCAGCGGCACGT
TATTGAATATGGCAGTCGAAAAGGAACAGCAACAGCAACAACGACACCAA
CGACAACCACAGCAGCAAGCGCAGACGAAACCACCCCCCCTACTGAAGGT
TCCTCAGGCAGTGGCAATGGAGGAGTTCGCTGATTTGGAGCGTAAGCTCG
CCTCGCCGCGGGAGGCACCGAGGAGAAAGACCCCGGAGCAAGTCATGATG
GAGGAATTCGCAGCTCTTGAGAGGAAGCTTGGCTCAACACAACAAGCGAG
TGCCGGTGCTGCTCAACCCGACGGGCAATCGAGTCGTGTGAGAAATACCT
TGACGAAACCGGAGGAACCTGAAGCGGAAGAGTGTTGCGGGAACGGGTGC
GCGACGTGCGTCTGGATTGGATACTGGGAGGAGCTGCAGGCGTGGGAAGA
AGCGGAACGCGAGCGCGAGGAAGCGCCACCATGAAGTGCGGCGGGAATAC
TTTTTTGTTGTATTTCGTTCTGGTGTGTTGCCACCCCCGGAGATTCACTC
TCTTTTAAAAATTGTCGTTCCGGCGCTACCTGAAGCCAGTCCCCCAGACT
AAAATTGCGTAGCGTTTCCATCTGTATTCACCGGAGGAGAAAGCCGGCTG
AGGTTTTCGAACCTCTCAACCATGTAGATGTCGGGGGCAAGGCTAACTGG
GATTGTCTATTGGCTGCTGCGTCGGCGACGAGCTTCGCATAAACACTCAG
TGCTGTGTGGCGTAATGTGGTGTAAGTTGAT

protein sequence of EsuBft1126_12a-0001

>EsuBft1126_12 ID=EsuBft1126_12|Name=EsuBft1126_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=227bp
MSFARVSFGPCKRPLAARTCCVARRASASSSCPLADGRREERRSPRARAS
GPAKQGPGAVQCRRRYHRWSPPGATDTNSGSGTLLNMAVEKEQQQQQRHQ
RQPQQQAQTKPPPLLKVPQAVAMEEFADLERKLASPREAPRRKTPEQVMM
EEFAALERKLGSTQQASAGAAQPDGQSSRVRNTLTKPEEPEAEECCGNGC
ATCVWIGYWEELQAWEEAEREREEAPP

mRNA from alignment at Scaffold_506:91397..98395+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1126_12a-0001 ID=EsuBft1126_12a-0001|Name=EsuBft1126_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=6999bp|location=Sequence derived from alignment at Scaffold_506:91397..98395+ (Ectocarpus subulatus male Bft15b)
TTGGTGCCAGCGAACATACTCTCTTAAGCCGAGAGGAAGGTGTGTCTTGG
ATGTCCTTCGCCAGAGTTTCATTTGGGCCGTGTAAGCGGCCCCTTGCTGC
TAGAACCTGCTGCGTGGCACGTCGTGCGTCGGCTTCTTCTTCATGTCCTC
TGGCCGACGGGAGAAGGGAAGAACGGCGATCACCTCGCGCAAGAGCGAGC
GGTCCAGCAAAGCAGGGTCCGGGAGCGGTGCAATGCAGGAGACGGTATCA
CCGTTGGTCACCTCCCGGGGCGACCGACACCAACAGCGGCAGCGGCACGT
TATTGAATATGGCAGTCGAAAAGGAACAGCAACAGCAACAACGACACCAA
CGACAACCACAGCAGCAAGCGCAGACGAAACCACCCCCCCTACTGAAGGT
TCCTCAGGCAGTGGCAATGGAGGAGTTCGCTGATTTGGAGCGTAAGCTCG
CCTCGCCGCGGGAGGCACCGAGGAGAAAGACCCCGGAGCAAGTCATGATG
GAGGAATTCGCAGCTCTTGAGAGGAAGCTTGGCTCAACACAACAAGCGAG
TGCCGGTGCTGCTCAACCCGACGGGCAATCGAGTCGTGTGAGAAATACCT
TGACGAAACCGGAGGTAAAGTGGACTGAATGCACGTGCACAACAGTATCT
TTCACAGTCGGGTGCCATTTTTCTGTGAAGTAATCCAAAGTGGGTGCTCG
TCCTCCGAAAACTCTCGGCGAAACATCAATTCGACAACAATGCCCTGAAA
GGACACCGTCGCATCGTGTACGACAACGACTCCCGCTGAAGCCTAATCTA
CTCTCACTGTTACACCTGGCTACTGATGATTTGTCTGTGCTTTTCCTCCT
GCTCGTCGAGAATTTGATGTGCTGCGACTGGGAGCCTTATTCACTTCGAA
GTCCATACAGGAATACCTGGTACGAGCGGGCAACAAACCGGAATGTTCAT
CAATTTCTGGTTGCTTGCCTTGTACTTCGTCTTCCACTGATAATCAGAGC
GGCTTAGGACAACACACACTATTGGAACCTCATTTTGACTGTTTTCGGCT
TGTGACCTCCTCGTCATCAATCATCACCAGGAACCTGAAGCGGAAGAGTG
TTGCGGGAACGGGTGCGCGACGTGCGTCTGGATTGGATACTGGTGAGACT
GCTCTGGGTTCCTCCAGACTTGTGTGTGTGTGTGTGTGTGTGTGTTTTAT
TATTAGCATCGACCGCGCTACCCGGCTGACCAATGAAAAGACGTCAGTCT
TAGTGCGGTTGAAAACACAAAACACTTCTATCTACCGTGAACTGGGACCC
CGTGAGGGGGCAGTATGAGGGAGGCTAAGCTATCCTTCGGATCAAAAACA
GAAACAGCAGCAACAGAAGAAAACTGCACTCGTCTACCAAGGCTATTACC
TAGTACTCGAGTTCGTTTAGGAATACTTTCACCAGTGTCCTCCTTGTTTT
CGCTACCATCATTGTGATCCTCATTTTGACAAGAAGAATCTCTGGGCAGT
TCTTCCCTAGCCCTACGTTTCTTGTTGTGGGGAAGGTCATCTGGCTCAAA
CCCTTTGCTCTCTTCCACTCCTCCATGTTTTCCTGCTCCATGGTCGTCTT
CGCCCTCCTTTCTTCCCTTTCCCTTTCCTTCGTCTTCGTCACTCCCAAAA
GAATTAACCTCACGACTATCGTTGTCGCAGAGATCCCAACCGATTGGCCC
TGGTGGAAGTTGGTCGATAAGTAGCCCATGACGTTTGAACACATCGCGAG
TTCGCATCGACAGAAAACGAGCTAGCTCGAAGGTAAACCGTCTCCGAATC
CTGTTAGTATGAAACGCTTTCTGGCGAACTAAGGCTCTTTCGCCTTCAAA
ATTCCCCCGGCAAAAAGCTTCGTGCGCCAAGTGGTTGGCGATAGCAACGA
TGAGTCGATTGGTGCCTTTGCCAAGACCACCATTCGTTGAAAAAGCAGCA
GTAAGGAGGGTAGATCTAGACGGGTTGAAAGTTCCCGCATAGTGATTTGC
CTTACTTGCAGCTCGATCTTCGAGGGCTGATCCTGGCTTAAGGATCGACT
TGTCGATGCTTCGACCTGCTGATGGGTTGACGATTGTTACGTCGATCAGA
ATGGACTTGGTGCAGAGGTCCTCTTCCTTCTCTCCTGCGTGTAATCCTGG
GGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNCTGCTGCTGCTGCTACTGCCTTCCACCACG
CACGAGCGTGCGTGGTGGAAGTGGTGTGTGTGTGTGTCCCTCCCGATCCT
ACGACATGAGTAACCTACATGTGTGTCTGTGTGTGTGTTTTTATTATTAG
CATGGACCGCCCGGCTGACCAATGAAAATACGTCAGTCTTAGTGCGGTCG
AAAACAGAAAACACTTCTATCTGCCATGAACTAGGACCCCGTGAGGGGGC
AGCATGGGGGAGGCTAAACCATTCTTCGGATCAAAGAGAGTGTGTGTGTA
TGTGTGTGTATTTTTGTTCATAAACACAAGGATTATTATTGTGCCGTGCG
CCGTAAGGCCCTGAGCGATCAGCATTCGCCGCACGAGGCCGCTCGTGGGG
CTAGAGCTCCGATTCTTACACCGCGAAAGCAGTTCAACTCGTTCTTGAAC
GCTTTCACAGCAAACAAGGAATGATCCATTAAACTTTAGCTGACTCTATT
CTGTACACCGTGACGGGTTGAACTCTCTGCGTTATGTTTATGTGTCCGCC
CCTGCTTTTCGTGGCACGCACACGGCACACACACGAGTGAAGATGACACA
CAAGCACTTGTGGCGAACTATGTACCCGGCTGATGTTGTTGCGCCCTGTT
TCCCTCCCTGCTGTATGCTATACTCCTTTATGTATTTCCTTTGTATTGCC
TTCGGCCTCTGTGCTGTTTCTTTTTTTCATGGCCTCCCTGCCTACTCTGT
CTGCTGTGTTGGGTACCTTGATCTCGCTTTGCTGTTGCCTTTGTTTTTTG
TACGTCTGGCTGTCTGCCCATCTGCCGCCTCTTTGTCCTGTTTGCTCCGT
TACTCCCATGCCCTGGTGCGTAGGGCCTGGTGCTGGTACGGTACCCTTTG
ATTTTTCTTTGGGCGGGTGTGGGAAGTGTCCTCCTTTATTTTTACTTTTT
ATTTTTTTCGGTTTCCGAGGGCTCTTTTCTCGAACGGTCGGTGCGATACC
TGTTCTTTTCTTTCTATCATTTTGTTTTGTTTTTCCGAGTGGTTTGTACC
ATAATTTTGTTTTTTTGTTTTCTCGCGGCGTCGTATGTGCCGGGTTTTGA
GACCACGGGCTCCCCATTTTTTGTGGACTATNATTTTTGTTTTTTGTTTT
CTCGCGGCGTCGTATGTGCCGGGTTTTGAGACCACGGGCTCCCCATTTTT
TGTGGACTATAGAGCTAATGTGAGAAACAACAACAACAACAACAACAACA
CGGAGAATGGTATACATAAACACCGTCAGCGATGGCAGCGAGGTTTAGTC
TCAGACACGTACCAGCGAAAACGCAAGGCCCGTCTCTTCGCGAACTCGTG
CAGCGAATGGAAGAAACGGTTGACGAATTTCCGTGGTTTAAGTTCGTGGA
GACTCTTACTGCAAGACTGTCACACACATGAACACCATGCTTCTCGCGTG
CACAAATGAGATTGTACCATTTCGTGCTGGCTTCGGGTGAATGCAGTGAT
CATGTGTTCGAAGCCGTTGTGTATTCATGTGTAAAATGCTACGCCGGGAG
ATCATGTGTGGACACTCCGCGGAGAGGACGGGGCACGCGAGCGCCCCGGC
CGCGCGCAGCCCCTGGAATTTTGCACTATCTGCTTCAGGGATCCCGCAAG
TACTAATTTGTTCAGAAGGCGTATGTATCTTGTTCGGGTGCTCAGAAACT
CGAGAATCCACGCACACGCAATCGTCGAAAATCGTGCTGTCCAACGTGTT
GCAAATGGTCCCGAAAGTACGGATGTGTGCGTGTTGAAACAACAACGCGA
TCAGAATCAACGATGAGGAGAAATTTTACTAAATATTTGTTTTTCAGCGC
CTTCGCACGAAACTTAGGATCTCGACTCACCGAATGAACTCCATTGCTCG
ACCCTTGTCGTTGCTCTCCCGGTCTTGGCACCCTACTGAAACAGGGAGGA
GCTGCAGGCGTGGGAAGAAGCGGAACGCGAGCGCGAGGAAGCGCCACCAT
GAAGTGCGGCGGGAATACTTTTTTGTTGTATTTCGTTCTGGTGTGTTGCC
ACCCCCGGAGATTCACTCTCTTTTAAAAATTGTCGTTCCGGCGCTACCTG
AAGCCAGTCCCCCAGACTAAAATTGCGTAGCGTTTCCATCTGTATTCACC
GGAGGAGAAAGCCGGCTGAGGTTTTCGAACCTCTCAACCATGTAGATGTC
GGGGGCAAGGCTAACTGGGATTGTCTATTGGCTGCTGCGTCGGCGACGAG
CTTCGCATAAACACTCAGTGCTGTGTGGCGTAATGTGGTGTAAGTTGAT

Coding sequence (CDS) from alignment at Scaffold_506:91397..98395+

>EsuBft1126_12a-0001 ID=EsuBft1126_12a-0001|Name=EsuBft1126_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=684bp|location=Sequence derived from alignment at Scaffold_506:91397..98395+ (Ectocarpus subulatus male Bft15b)
ATGTCCTTCGCCAGAGTTTCATTTGGGCCGTGTAAGCGGCCCCTTGCTGC
TAGAACCTGCTGCGTGGCACGTCGTGCGTCGGCTTCTTCTTCATGTCCTC
TGGCCGACGGGAGAAGGGAAGAACGGCGATCACCTCGCGCAAGAGCGAGC
GGTCCAGCAAAGCAGGGTCCGGGAGCGGTGCAATGCAGGAGACGGTATCA
CCGTTGGTCACCTCCCGGGGCGACCGACACCAACAGCGGCAGCGGCACGT
TATTGAATATGGCAGTCGAAAAGGAACAGCAACAGCAACAACGACACCAA
CGACAACCACAGCAGCAAGCGCAGACGAAACCACCCCCCCTACTGAAGGT
TCCTCAGGCAGTGGCAATGGAGGAGTTCGCTGATTTGGAGCGTAAGCTCG
CCTCGCCGCGGGAGGCACCGAGGAGAAAGACCCCGGAGCAAGTCATGATG
GAGGAATTCGCAGCTCTTGAGAGGAAGCTTGGCTCAACACAACAAGCGAG
TGCCGGTGCTGCTCAACCCGACGGGCAATCGAGTCGTGTGAGAAATACCT
TGACGAAACCGGAGGAACCTGAAGCGGAAGAGTGTTGCGGGAACGGGTGC
GCGACGTGCGTCTGGATTGGATACTGGGAGGAGCTGCAGGCGTGGGAAGA
AGCGGAACGCGAGCGCGAGGAAGCGCCACCATGA