EsuBft1125_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1125_9a-0001
Unique NameEsuBft1125_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_133contigScaffold_133:611139..614389 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G873
ProteomeIdEsuBft1125_9
Protein domainsCoil
Protein domainsPTHR19446
Protein domainsIPR000477
Ownerapollo_admin@sb-roscoff.fr
Noterna-directed dna polymerase from mobile element jockey os:drosophila melanogaster gn:pol pe:1 s [Automatic annotation]
Nb exon6
Max annot lvl2759|Eukaryota
Length2076
Evalue1.2e-110
EggNOG OGsCOG0553@1|root,COG2940@1|root,COG5076@1|root,KOG1075@1|root,KOG0383@2759|Eukaryota,KOG0384@2759|Eukaryota,KOG1075@2759|Eukaryota,KOG1081@2759|Eukaryota,KOG1474@2759|Eukaryota
Date last modified2016-06-13
Date creation2016-06-13
KEGG rclassRC00003,RC00004,RC00039,RC00041,RC00060,RC00181,RC00496
KEGG koko:K11367,ko:K11424,ko:K11654,ko:K13506,ko:K14437
KEGG ReactionR00851,R03875,R03938,R04866,R04867,R09380
KEGG Pathwayko00310,ko00561,ko00564,ko01100,ko01110,ko05202,map00310,map00561,map00564,map01100,map01110,map05202
KEGG ModuleM00089
EC2.1.1.43,2.3.1.15,3.6.4.12
Descriptionacetylation-dependent protein binding
COG categoryBK
BRITEko00000,ko00001,ko00002,ko01000,ko01004,ko03021,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1125_9aEsuBft1125_9aEctocarpus subulatus male Bft15bgeneScaffold_133 611139..614389 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1125_9a-0001EsuBft1125_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_133 611139..614389 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1125_9a-0001-exonEsuBft1125_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_133 611139..611552 -
EsuBft1125_9a-0001-exonagat-exon-7908Ectocarpus subulatus male Bft15bexonScaffold_133 611852..611951 -
EsuBft1125_9a-0001-exonagat-exon-7905Ectocarpus subulatus male Bft15bexonScaffold_133 612020..612234 -
EsuBft1125_9a-0001-exonagat-exon-7904Ectocarpus subulatus male Bft15bexonScaffold_133 612649..613440 -
EsuBft1125_9a-0001-exonagat-exon-7907Ectocarpus subulatus male Bft15bexonScaffold_133 613694..613797 -
EsuBft1125_9a-0001-exonagat-exon-7906Ectocarpus subulatus male Bft15bexonScaffold_133 613939..614389 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1125_9a-0001-cdsEsuBft1125_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_133 611139..611552 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1125_9a-0001 ID=EsuBft1125_9a-0001|Name=EsuBft1125_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2076bp|location=Sequence derived from alignment at Scaffold_133:611139..614389- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTGTGGAAAACGAGTATACGCCAAGTAGATGGAGGGAAGGAGTGGT
TGTGAACTTGTTTAAGAAAGGAGACAAGACTGACCCAGGAAACTACAGGG
GGAACACTGTTGTGAACACAGCAGGAAAAGTGCTCTGTAAGCTGCTGAAT
GATAGGATAGTGGGAGTATTGGAGAAGGACCATAGCATTAGTGAGAGCCA
GTCAGGTTTCCGAAAGAAGAGGGGGTGCGTAGACCACGTATTCACGGTAG
GGAGAATCATCCAAGGTAGAAAGAGGGCGGGAAAGCCGACGTACTGCTTC
TTCCTGGACGTGAAAANGTTCTGTAAGCTGCTGAACGATAGGATAGTGGG
AGCATTGGAAAAGGAACATAGCATTAGTGAGGGCCAGGCAGGTTTCCGCA
AGAAGAGGGGGTGCGTAGACCACGTGTTCACGGTAGGGAGAATCATCCAA
GAGTGTACGAAAAGCGCGGTCATGCTAGACGGAGAACTGTCAAAATTCTT
CGACATTGAGCAGGGGGTCCCACAAGGTTGCACGCTGTCCCCAACATTGT
TCCAGGTGTTCATCAACGATCTATTGGAAGTCGTAGNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGCTGT
TTGCGGATGATTTTGTCGGTATGTCGTACACCCCTGACGGACTGCAACTG
CAAATTGACGCGGCGAAGAAGTTTACTGATAAGTGGAGATTGTCTGCCAA
CGTTCAGAAGAGTGCCGTCATGGTATACAACGAGAACAAGGAGGAACCAG
TAGAACATAGATGGAAGTGGGGGATCGAGGAGATTGCAGTAGTGGACCAG
TACACATACCTCGGAGTAGAGATCGCAAAAGACTGCTCGTGGAATGCACA
CATGTCCAAGGTAGCGGAAAAGGGCAAAGCACGAGCAGGGAAGCTGCACC
CAATACTCGCAAACCGGCACCTCGATACACGCATCAAATTGACGGTTTTG
AAGAGCGTAATCGTACCGCCGCTAGAGTACGCCGGAGAAGTATGGGAAGG
AAATAAGAAGGTAGTGAAAGAGCTCGAGGCGGCGCAGATGAAAGCAGCGA
AAATCATCCTAGGATGCTCCAGGCGCACAAGCAATGCAGCCGTCAGGCTG
GATGAGCTCCAGCTCTCGGACGAGCAGCGAAACGTAATCGACGCTCTTAT
CAAGGAGCAGGTCAAGATCAAAGTAGAAGAAGCAGCACCAGCAGAGCGCC
CCGCAACACAGAGCGAGGGCATGCCTTCCGAAGGAGGCGACACCCGGCTG
GAGAGTCGGCTGGCTCGGAGTGAAGCCCGCGACCTGAAGGCCAGCCCCGA
TCGCCGGCGGACGGAAGTCCCAACCCCGACAGAAACAATACGGATTGGCG
CAGTTATCACAATCCCTGCATTCACCGGGAAGTTTAGCCCCGAGGACGAT
GTACAGACGGCGGGGCAGTGGTACTCGTTGAGGCAGCAAGTAGGGGAGGA
GTCCCGGCGCTGTATCACAAGAGCATCAGTACTTCGCCAGGAACTAGAAG
CGTACGGTTGGGTGTATTCCGATCATGATGCTGACGTCCACTATGTACGC
AACCTTCTGCCCGATTTCAATGTGCAGAGGAGCGTGTTGTTGGCGCATTC
GGAGGTCAAGACGGAATTGGTAGAGAAGGTGATTCTGACTGCTTGGGCGG
AGACGGAGGCCGCTAGGAAGAGGGCGTCGGAGAGCGTGGGGGCGTATGCC
CTCGTCACTGGCGGTGATAACCGTGGTGGCGGGGGCGGCAACATGGGGGT
TAGGAGGAAAACGAGAGGACAACGGAGGATGGCAGCGCGGCAACAGCAGC
AACAACCGCAACCCCGCACAACATGA
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protein sequence of EsuBft1125_9a-0001

>EsuBft1125_9 ID=EsuBft1125_9|Name=EsuBft1125_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=691bp
MGVENEYTPSRWREGVVVNLFKKGDKTDPGNYRGNTVVNTAGKVLCKLLN
DRIVGVLEKDHSISESQSGFRKKRGCVDHVFTVGRIIQGRKRAGKPTYCF
FLDVKXFCKLLNDRIVGALEKEHSISEGQAGFRKKRGCVDHVFTVGRIIQ
ECTKSAVMLDGELSKFFDIEQGVPQGCTLSPTLFQVFINDLLEVVXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMLFADDFVGMSYTPDGLQL
QIDAAKKFTDKWRLSANVQKSAVMVYNENKEEPVEHRWKWGIEEIAVVDQ
YTYLGVEIAKDCSWNAHMSKVAEKGKARAGKLHPILANRHLDTRIKLTVL
KSVIVPPLEYAGEVWEGNKKVVKELEAAQMKAAKIILGCSRRTSNAAVRL
DELQLSDEQRNVIDALIKEQVKIKVEEAAPAERPATQSEGMPSEGGDTRL
ESRLARSEARDLKASPDRRRTEVPTPTETIRIGAVITIPAFTGKFSPEDD
VQTAGQWYSLRQQVGEESRRCITRASVLRQELEAYGWVYSDHDADVHYVR
NLLPDFNVQRSVLLAHSEVKTELVEKVILTAWAETEAARKRASESVGAYA
LVTGGDNRGGGGGNMGVRRKTRGQRRMAARQQQQQPQPRTT
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mRNA from alignment at Scaffold_133:611139..614389-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1125_9a-0001 ID=EsuBft1125_9a-0001|Name=EsuBft1125_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3251bp|location=Sequence derived from alignment at Scaffold_133:611139..614389- (Ectocarpus subulatus male Bft15b)
ATGGGTGTGGAAAACGAGTATACGCCAAGTAGATGGAGGGAAGGAGTGGT
TGTGAACTTGTTTAAGAAAGGAGACAAGACTGACCCAGGAAACTACAGGG
GGAACACTGTTGTGAACACAGCAGGAAAAGTGCTCTGTAAGCTGCTGAAT
GATAGGATAGTGGGAGTATTGGAGAAGGACCATAGCATTAGTGAGAGCCA
GTCAGGTTTCCGAAAGAAGAGGGGGTGCGTAGACCACGTATTCACGGTAG
GGAGAATCATCCAAGGTAGAAAGAGGGCGGGAAAGCCGACGTACTGCTTC
TTCCTGGACGTGAAAANGTTCTGTAAGCTGCTGAACGATAGGATAGTGGG
AGCATTGGAAAAGGAACATAGCATTAGTGAGGGCCAGGCAGGTTTCCGCA
AGAAGAGGGGGTGCGTAGACCACGTGTTCACGGTAGGGAGAATCATCCAA
GGTAGAAAGAGGGCGGGAAAGCCGACTTTCTGCTTCTTCCTAAGGCATAC
GACACCGTATGGAGAAATGGGATGTGGAAACAACTGTCCAAATAAGGGAT
CAATGGGAAAATAAATGTGGAGAGTGCTGAAGAAGATGACAGAGTGTACG
AAAAGCGCGGTCATGCTAGACGGAGAACTGTCAAAATTCTTCGACATTGA
GCAGGGGGTCCCACAAGGTTGCACGCTGTCCCCAACATTGTTCCAGGTGT
TCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCTTCGACA
TTGAGCAGGGGTCCCACAAGGTTACATGCCGTCCCCAACATTGTTCCAGG
TGTTCATCAACGATCTATTGGAAGTCGTAGNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGCTGTTTGCGG
ATGATTTTGTCGGTATGTCGTACACCCCTGACGGACTGCAACTGCAAATT
GACGCGGCGAAGAAGTTTACTGATAAGTGGAGATTGTCTGCCAACGTTCA
GAAGAGTGCCGTCATGGTATACAACGAGAACAAGGAGGAACCAGTAGAAC
ATAGATGGAAGTGGGGGATCGAGGAGATTGCAGTAGTGGACCAGTACACA
TACCTCGGAGTAGAGATCGCAAAAGACTGCTCGTGGAATGCACACATGTC
CAAGGTAGCGGAAAAGGGCAAAGCACGAGCAGGGAAGCTGCACCCAATAC
TCGCAAACCGGCACCTCGATACACGCATCAAATTGACGGTTTTGAAGAGC
GTAATCGTACCGCCGCTAGAGTACGCCGGAGAAGTATGGGAAGGAAATAA
GAAGGTAGTGAAAGAGCTCGAGGCGGCGCAGATGAAAGCAGCGAAAATCA
TCCTAGGATGCTCCAGGCGCACAAGCAATGCAGCCGTCAGGGTAGAATGA
ATGATAGATGTACTTCTGGCAATGCCAAGTGGTTGGTGCTGGATGTTCCC
ATGGAATGACGTAGAGCGGAATACCGGGTGACATGTTTGGTACGTAAATG
GATTCCTGGGATGTACAAGGTACCCCTGTTGTATACGGTGTCGCCCCCTC
AACGGGACTTGTGTGCGTATTTTATTATCGGCTTGTGTGTGTATGTGGAT
GCAGCTAATCACAACAGGTTTTTCTCCTCGGCGCAAGCCCGCCGAGTTGC
CGATACCCTATTCAACACGCGTCTTGCGACACGCTACCCCCAGTTCGGAT
TATCCTACACGCTAGCGAGTGTGATATCATACGGGATCCCGAGGTCGGGC
TAGCTACAATGGGGTTCGGCCAGAGAACAGTGACACGGAAATCATGGAGC
AGCAGCTGGATGAGCTCCAGCTCTCGGACGAGCAGCGAAACGTAATCGAC
GCTCTTATCAAGGAGCAGGTCAAGATCAAAGTAGAAGAAGCAGCACCAGC
AGAGCGCCCCGCAACACAGAGCGAGGGCATGCCTTCCGAAGGAGGCGACA
CCCGGCTGGAGAGTCGGCTGGCTCGGAGTGAAGCCCGCGACCTGAAGGCC
AGCCCCGATCGCCGGCGGACGTGAGCCTCATCGACACCCTCGCGCGGGCC
TTGCAGAGGGTCAAGATAAAACGGGAGGATGAATACAGGGAAGTCCCAAC
CCCGACAGAAACAATACGGATTGGCGCAGTTATCACAATCCCTGCATTCA
CCGGGAAGTTTAGCCCCGAGGACGATGTACAGACGGCGGTAATGGTTGTT
ACCAGTCAATTTCGATCTTTGTTGGAGCAGGAGCGTTGCCTTGGGGCAGT
AGAATCGAAGAACACGATTCGTGTAGGAAAGACGGATGCGAATATCTCGG
CATGAAGGTGGAGCATGGGACGGAAGCTGTAGATCGGGCAGTTAAGGCTT
GGCAGCTAATTATATCCAAGATACGAGTACCGACAATAGTCCCTGCAATC
CTAGCTAGTGGTTGCCCCACTGAGTCGTGGGATCAATTTTTCAATTTTTT
CTGAGTGCACGTAGAAACGGACAAGTTGGAGTTGCAGGGGCAGTGGTACT
CGTTGAGGCAGCAAGTAGGGGAGGAGTCCCGGCGCTGTATCACAAGAGCA
TCAGTACTTCGCCAGGAACTAGAAGCGTACGGTTGGGTGTATTCCGATCA
TGATGCTGACGTCCACTATGTACGCAACCTTCTGCCCGATTTCAATGTGC
AGAGGAGCGTGTTGTTGGCGCATTCGGAGGTCAAGACGGAATTGGTAGAG
AAGGTGATTCTGACTGCTTGGGCGGAGACGGAGGCCGCTAGGAAGAGGGC
GTCGGAGAGCGTGGGGGCGTATGCCCTCGTCACTGGCGGTGATAACCGTG
GTGGCGGGGGCGGCAACATGGGGGTTAGGAGGAAAACGAGAGGACAACGG
AGGATGGCAGCGCGGCAACAGCAGCAACAACCGCAACCCCGCACAACATG
A
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Coding sequence (CDS) from alignment at Scaffold_133:611139..614389-

>EsuBft1125_9a-0001 ID=EsuBft1125_9a-0001|Name=EsuBft1125_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2076bp|location=Sequence derived from alignment at Scaffold_133:611139..614389- (Ectocarpus subulatus male Bft15b)
ATGGGTGTGGAAAACGAGTATACGCCAAGTAGATGGAGGGAAGGAGTGGT
TGTGAACTTGTTTAAGAAAGGAGACAAGACTGACCCAGGAAACTACAGGG
GGAACACTGTTGTGAACACAGCAGGAAAAGTGCTCTGTAAGCTGCTGAAT
GATAGGATAGTGGGAGTATTGGAGAAGGACCATAGCATTAGTGAGAGCCA
GTCAGGTTTCCGAAAGAAGAGGGGGTGCGTAGACCACGTATTCACGGTAG
GGAGAATCATCCAAGGTAGAAAGAGGGCGGGAAAGCCGACGTACTGCTTC
TTCCTGGACGTGAAAANGTTCTGTAAGCTGCTGAACGATAGGATAGTGGG
AGCATTGGAAAAGGAACATAGCATTAGTGAGGGCCAGGCAGGTTTCCGCA
AGAAGAGGGGGTGCGTAGACCACGTGTTCACGGTAGGGAGAATCATCCAA
GAGTGTACGAAAAGCGCGGTCATGCTAGACGGAGAACTGTCAAAATTCTT
CGACATTGAGCAGGGGGTCCCACAAGGTTGCACGCTGTCCCCAACATTGT
TCCAGGTGTTCATCAACGATCTATTGGAAGTCGTAGNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGCTGT
TTGCGGATGATTTTGTCGGTATGTCGTACACCCCTGACGGACTGCAACTG
CAAATTGACGCGGCGAAGAAGTTTACTGATAAGTGGAGATTGTCTGCCAA
CGTTCAGAAGAGTGCCGTCATGGTATACAACGAGAACAAGGAGGAACCAG
TAGAACATAGATGGAAGTGGGGGATCGAGGAGATTGCAGTAGTGGACCAG
TACACATACCTCGGAGTAGAGATCGCAAAAGACTGCTCGTGGAATGCACA
CATGTCCAAGGTAGCGGAAAAGGGCAAAGCACGAGCAGGGAAGCTGCACC
CAATACTCGCAAACCGGCACCTCGATACACGCATCAAATTGACGGTTTTG
AAGAGCGTAATCGTACCGCCGCTAGAGTACGCCGGAGAAGTATGGGAAGG
AAATAAGAAGGTAGTGAAAGAGCTCGAGGCGGCGCAGATGAAAGCAGCGA
AAATCATCCTAGGATGCTCCAGGCGCACAAGCAATGCAGCCGTCAGGCTG
GATGAGCTCCAGCTCTCGGACGAGCAGCGAAACGTAATCGACGCTCTTAT
CAAGGAGCAGGTCAAGATCAAAGTAGAAGAAGCAGCACCAGCAGAGCGCC
CCGCAACACAGAGCGAGGGCATGCCTTCCGAAGGAGGCGACACCCGGCTG
GAGAGTCGGCTGGCTCGGAGTGAAGCCCGCGACCTGAAGGCCAGCCCCGA
TCGCCGGCGGACGGAAGTCCCAACCCCGACAGAAACAATACGGATTGGCG
CAGTTATCACAATCCCTGCATTCACCGGGAAGTTTAGCCCCGAGGACGAT
GTACAGACGGCGGGGCAGTGGTACTCGTTGAGGCAGCAAGTAGGGGAGGA
GTCCCGGCGCTGTATCACAAGAGCATCAGTACTTCGCCAGGAACTAGAAG
CGTACGGTTGGGTGTATTCCGATCATGATGCTGACGTCCACTATGTACGC
AACCTTCTGCCCGATTTCAATGTGCAGAGGAGCGTGTTGTTGGCGCATTC
GGAGGTCAAGACGGAATTGGTAGAGAAGGTGATTCTGACTGCTTGGGCGG
AGACGGAGGCCGCTAGGAAGAGGGCGTCGGAGAGCGTGGGGGCGTATGCC
CTCGTCACTGGCGGTGATAACCGTGGTGGCGGGGGCGGCAACATGGGGGT
TAGGAGGAAAACGAGAGGACAACGGAGGATGGCAGCGCGGCAACAGCAGC
AACAACCGCAACCCCGCACAACATGA
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