EsuBft1125_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1125_6a-0001
Unique NameEsuBft1125_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_133contigScaffold_133:645280..646428 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1125_6
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length95
Hectar predicted targeting categoryother localisation
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1125_6aEsuBft1125_6aEctocarpus subulatus male Bft15bgeneScaffold_133 645280..646428 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1125_6a-0001-exonagat-exon-7890Ectocarpus subulatus male Bft15bexonScaffold_133 645280..645419 +
EsuBft1125_6a-0001-exonagat-exon-7889Ectocarpus subulatus male Bft15bexonScaffold_133 645528..645720 +
EsuBft1125_6a-0001-exonEsuBft1125_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_133 645808..646428 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1125_6a-0001-cdsEsuBft1125_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_133 645280..645419 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1125_6a-0001-exonagat-three_prime_utr-1176Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_133 646297..646428 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1125_6a-0001EsuBft1125_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_133 645280..646296 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1125_6a-0001 ID=EsuBft1125_6a-0001|Name=EsuBft1125_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=954bp|location=Sequence derived from alignment at Scaffold_133:645280..646428+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGTATAACAAGGCGCTGCATCACTTGGAAGGCACCGGCTCAAAGTT
TGCGAAGGAGACGCGTGTTCGCTTGCGAGAGTTGGAAGCCAAGGTCAGCA
CAGCGGTCTCGTTAGAGCGAGCCCTCGAGCAAGCGCAAAGGGCAGCGGCG
CTGGGGGTTCGCGAGCAAGCCTTCAACTTTGCGACGGAGCGTGCCAAGAA
ATTGCTGTCCGATCTCCAACCAACCGAGGCGATAAAGCGCGGTGTCTACT
GGTTTTGGCCCCGAGCTAAGCAAAGCAATGCCGCCAGCGAAGAGCTGCTG
GAGTTGATGAGACATTACTGGCACACGGATGAGCTTACGGAGCCGGGTGG
GGGCGAGGCGGTGTACGCCAAGTTCTTCAACTGGGCGTCCTACAAGAGCT
TCAAGGAGGGACAGAGCGACAATTTCACGGACCCTGGCCGTACGCTCTTC
CTCTCGACGCGTTGCAAGTGCCTGGTCCTCCCTGCAATGGAGCAGTGCGC
GTGCAAGATCCACTCGCAGCAGGTGCTATGCATCGAGGCGCTAGCCATTG
TCGACATGACCAGCCACGACGAATGCGATTGTCGATGGTGCAACGTAGAT
GGCGGCCGCAGGTGGCGGGAAACGTGGAAGCATATGGGCACTTTCTCCGA
TGCAATTGCCTGCCCCAAGGTCAACTTGCGGGCAGCGGACCCGGAGGGTG
ACAGTTGGATGGGGCGGAAACCGGAGTGCAACGCTTTGGACTGCGCTATG
TGTGGGTTGGGGGGGACTGACGACATTCCCATCTGCAGCAAGCTGGAGAC
CTCCGAGCAGACGGTGGTGTGAAAGATGTTCGAGGACGTGATAACTGTGC
CTGCATCAGCGGGTGGGAAGATCAAGGCCAAGAAGCTCGCCAGCCAAACG
GTGCCGAAGGAGGGCAAGCTTTGCGATCTTTGGTTGGCTTTCAAAGAGCA
CACC
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protein sequence of EsuBft1125_6a-0001

>EsuBft1125_6 ID=EsuBft1125_6|Name=EsuBft1125_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=273bp
MGYNKALHHLEGTGSKFAKETRVRLRELEAKVSTAVSLERALEQAQRAAA
LGVREQAFNFATERAKKLLSDLQPTEAIKRGVYWFWPRAKQSNAASEELL
ELMRHYWHTDELTEPGGGEAVYAKFFNWASYKSFKEGQSDNFTDPGRTLF
LSTRCKCLVLPAMEQCACKIHSQQVLCIEALAIVDMTSHDECDCRWCNVD
GGRRWRETWKHMGTFSDAIACPKVNLRAADPEGDSWMGRKPECNALDCAM
CGLGGTDDIPICSKLETSEQTVV
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mRNA from alignment at Scaffold_133:645280..646428+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1125_6a-0001 ID=EsuBft1125_6a-0001|Name=EsuBft1125_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1149bp|location=Sequence derived from alignment at Scaffold_133:645280..646428+ (Ectocarpus subulatus male Bft15b)
ATGGGGTATAACAAGGCGCTGCATCACTTGGAAGGCACCGGCTCAAAGTT
TGCGAAGGAGACGCGTGTTCGCTTGCGAGAGTTGGAAGCCAAGGTCAGCA
CAGCGGTCTCGTTAGAGCGAGCCCTCGAGCAAGCGCAAAGGTAAGGTAGA
ACCAAGGAGGGTAGCCGCACATTTCAAACGATCCTCACCGCTGCGGCGTT
TCCCGTGGACGACGTAGACGGGGCTTCATCGGTGTCAGCAAGACGTAGGG
CAGCGGCGCTGGGGGTTCGCGAGCAAGCCTTCAACTTTGCGACGGAGCGT
GCCAAGAAATTGCTGTCCGATCTCCAACCAACCGAGGCGATAAAGCGCGG
TGTCTACTGGTTTTGGCCCCGAGCTAAGCAAAGCAATGCCGCCAGCGAAG
AGCTGCTGGAGTTGATGAGACATTACTGGCACACGGATGAGGTGTCTCAC
CAGCCTGGCAACTCAGCTGAGCGCGACATGTGAAAGGAGAGCAAGTCTCT
GACAGCTCACCGCCACCCTCGGCGGCAGCTTACGGAGCCGGGTGGGGGCG
AGGCGGTGTACGCCAAGTTCTTCAACTGGGCGTCCTACAAGAGCTTCAAG
GAGGGACAGAGCGACAATTTCACGGACCCTGGCCGTACGCTCTTCCTCTC
GACGCGTTGCAAGTGCCTGGTCCTCCCTGCAATGGAGCAGTGCGCGTGCA
AGATCCACTCGCAGCAGGTGCTATGCATCGAGGCGCTAGCCATTGTCGAC
ATGACCAGCCACGACGAATGCGATTGTCGATGGTGCAACGTAGATGGCGG
CCGCAGGTGGCGGGAAACGTGGAAGCATATGGGCACTTTCTCCGATGCAA
TTGCCTGCCCCAAGGTCAACTTGCGGGCAGCGGACCCGGAGGGTGACAGT
TGGATGGGGCGGAAACCGGAGTGCAACGCTTTGGACTGCGCTATGTGTGG
GTTGGGGGGGACTGACGACATTCCCATCTGCAGCAAGCTGGAGACCTCCG
AGCAGACGGTGGTGTGAAAGATGTTCGAGGACGTGATAACTGTGCCTGCA
TCAGCGGGTGGGAAGATCAAGGCCAAGAAGCTCGCCAGCCAAACGGTGCC
GAAGGAGGGCAAGCTTTGCGATCTTTGGTTGGCTTTCAAAGAGCACACC
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Coding sequence (CDS) from alignment at Scaffold_133:645280..646428+

>EsuBft1125_6a-0001 ID=EsuBft1125_6a-0001|Name=EsuBft1125_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=822bp|location=Sequence derived from alignment at Scaffold_133:645280..646428+ (Ectocarpus subulatus male Bft15b)
ATGGGGTATAACAAGGCGCTGCATCACTTGGAAGGCACCGGCTCAAAGTT
TGCGAAGGAGACGCGTGTTCGCTTGCGAGAGTTGGAAGCCAAGGTCAGCA
CAGCGGTCTCGTTAGAGCGAGCCCTCGAGCAAGCGCAAAGGGCAGCGGCG
CTGGGGGTTCGCGAGCAAGCCTTCAACTTTGCGACGGAGCGTGCCAAGAA
ATTGCTGTCCGATCTCCAACCAACCGAGGCGATAAAGCGCGGTGTCTACT
GGTTTTGGCCCCGAGCTAAGCAAAGCAATGCCGCCAGCGAAGAGCTGCTG
GAGTTGATGAGACATTACTGGCACACGGATGAGCTTACGGAGCCGGGTGG
GGGCGAGGCGGTGTACGCCAAGTTCTTCAACTGGGCGTCCTACAAGAGCT
TCAAGGAGGGACAGAGCGACAATTTCACGGACCCTGGCCGTACGCTCTTC
CTCTCGACGCGTTGCAAGTGCCTGGTCCTCCCTGCAATGGAGCAGTGCGC
GTGCAAGATCCACTCGCAGCAGGTGCTATGCATCGAGGCGCTAGCCATTG
TCGACATGACCAGCCACGACGAATGCGATTGTCGATGGTGCAACGTAGAT
GGCGGCCGCAGGTGGCGGGAAACGTGGAAGCATATGGGCACTTTCTCCGA
TGCAATTGCCTGCCCCAAGGTCAACTTGCGGGCAGCGGACCCGGAGGGTG
ACAGTTGGATGGGGCGGAAACCGGAGTGCAACGCTTTGGACTGCGCTATG
TGTGGGTTGGGGGGGACTGACGACATTCCCATCTGCAGCAAGCTGGAGAC
CTCCGAGCAGACGGTGGTGTGA
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