EsuBft1125_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1125_5a-0001
Unique Name	EsuBft1125_5a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_133	contig	Scaffold_133:646600..647778 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1125_5
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	117
Hectar predicted targeting category	other localisation
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1125_5a	EsuBft1125_5a	Ectocarpus subulatus male Bft15b	gene	Scaffold_133 646600..647778 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1125_5a-0001-exon	EsuBft1125_5a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_133 646600..647778 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1125_5a-0001-cds	EsuBft1125_5a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_133 646600..647373 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1125_5a-0001-exon	agat-three_prime_utr-1175	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_133 647374..647778 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1125_5a-0001	EsuBft1125_5	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_133 646600..647373 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_133:646600..647778+
coding sequence from alignment at Scaffold_133:646600..647778+

spliced messenger RNA

>EsuBft1125_5a-0001 ID=EsuBft1125_5a-0001|Name=EsuBft1125_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1179bp|location=Sequence derived from alignment at Scaffold_133:646600..647778+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGCCATCGTCCACTTCAACCCGCAGACACACGTGGGGGGTGGCAG
CGTGCACGTGACGGAAACATGGATCTTTGCATCTGAGGACATGACACATG
ACTGCGATTTCCACCTCCACGGCTTGGCCAGGATGGCGGACCACTACCTG
CGTGGAGATGGGAGCGAAACAACGGCTGCCGCCCGGAAAGAAGGCAGGAC
GCCTCGGATTCACATCTTTACCGATGGGTGCGGGAAGCAGTACAAGGGAA
GGCGGAATGTCCGCTTTTTGGCCGACAGCGTCCGGCAAATTGGCTTCTTC
ATCGACCACGACTTCGCGGCCACATCTCACTTCAACGGTGGTGGGATCGG
CGGAGTCGCAAAGAACGCCATGAAGAGGAGGGAGAGATTTGGCAAGCGAA
TCATGGGGGCGGACGGGGTGGTCAGGTTTTTGCGAAGCTTCTTTCGGGAG
AAGGCAGGCAGCGAGGGGGAGGAGGGTATGCGGAGGTACTTCGCGAAGTG
GTCTCCGTACCCCATGCGGAGGGTGCACGTCGAGTTTATCGGTAAGAAGG
AGATATATCGGCCAAACTCGATCCTGGAAGGCGTAGAGGGTACACGAGAG
ATGTACCACTTTGCGGGAGCAAACACTCCCGAGTGGGATGGGTCCACCTC
AACCAAGGGACGCGAAGATGACTGTAAGCTCGTGCTGAAGAGCGAGGGCC
AGGGCCAGTTGTCGAGTCTAGAGACGAGCCGGTTGCGGGAAGTCAAGGTG
TTGGGTGCAGTAGCGAGCAGATAGAAGGGCCAGGGGGCTGGGTTGCAGGA
TCCGATATCGGGGGAGGAAGACGTGACTTGCAGGAAGGTGAAACGGACCT
ACAGTCTCAGGACTCGTTTGGCGTCGTGCTTCTGCTCGGCGTGCCGGCGT
TCTGAGTATGAGCAGTGCTACGTTAGCAAACGTACCCCCGTCTCGTTCCC
GCAATGGAGGATGGCGTGGTGAAGGAAACGGTGATCATGGACACTGGAGT
AGCGCCCGTAGACGAAGATGCCTCCGAGGGGATGAAGTTCCCGCGATACA
AGAAGGAATGCAAAACGAAGAGAATAACTGGGACACAGTGGCAGGACGGC
GACTCTGTTACTGCATCAAAGATTTGGGAAGAGCTTGGAAGGAAGGCAGA
GCCCAGTATTTTTGCCCGTTTCGGGGGGT

protein sequence of EsuBft1125_5a-0001

>EsuBft1125_5 ID=EsuBft1125_5|Name=EsuBft1125_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=257bp
MAAIVHFNPQTHVGGGSVHVTETWIFASEDMTHDCDFHLHGLARMADHYL
RGDGSETTAAARKEGRTPRIHIFTDGCGKQYKGRRNVRFLADSVRQIGFF
IDHDFAATSHFNGGGIGGVAKNAMKRRERFGKRIMGADGVVRFLRSFFRE
KAGSEGEEGMRRYFAKWSPYPMRRVHVEFIGKKEIYRPNSILEGVEGTRE
MYHFAGANTPEWDGSTSTKGREDDCKLVLKSEGQGQLSSLETSRLREVKV
LGAVASR

mRNA from alignment at Scaffold_133:646600..647778+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1125_5a-0001 ID=EsuBft1125_5a-0001|Name=EsuBft1125_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1179bp|location=Sequence derived from alignment at Scaffold_133:646600..647778+ (Ectocarpus subulatus male Bft15b)
ATGGCGGCCATCGTCCACTTCAACCCGCAGACACACGTGGGGGGTGGCAG
CGTGCACGTGACGGAAACATGGATCTTTGCATCTGAGGACATGACACATG
ACTGCGATTTCCACCTCCACGGCTTGGCCAGGATGGCGGACCACTACCTG
CGTGGAGATGGGAGCGAAACAACGGCTGCCGCCCGGAAAGAAGGCAGGAC
GCCTCGGATTCACATCTTTACCGATGGGTGCGGGAAGCAGTACAAGGGAA
GGCGGAATGTCCGCTTTTTGGCCGACAGCGTCCGGCAAATTGGCTTCTTC
ATCGACCACGACTTCGCGGCCACATCTCACTTCAACGGTGGTGGGATCGG
CGGAGTCGCAAAGAACGCCATGAAGAGGAGGGAGAGATTTGGCAAGCGAA
TCATGGGGGCGGACGGGGTGGTCAGGTTTTTGCGAAGCTTCTTTCGGGAG
AAGGCAGGCAGCGAGGGGGAGGAGGGTATGCGGAGGTACTTCGCGAAGTG
GTCTCCGTACCCCATGCGGAGGGTGCACGTCGAGTTTATCGGTAAGAAGG
AGATATATCGGCCAAACTCGATCCTGGAAGGCGTAGAGGGTACACGAGAG
ATGTACCACTTTGCGGGAGCAAACACTCCCGAGTGGGATGGGTCCACCTC
AACCAAGGGACGCGAAGATGACTGTAAGCTCGTGCTGAAGAGCGAGGGCC
AGGGCCAGTTGTCGAGTCTAGAGACGAGCCGGTTGCGGGAAGTCAAGGTG
TTGGGTGCAGTAGCGAGCAGATAGAAGGGCCAGGGGGCTGGGTTGCAGGA
TCCGATATCGGGGGAGGAAGACGTGACTTGCAGGAAGGTGAAACGGACCT
ACAGTCTCAGGACTCGTTTGGCGTCGTGCTTCTGCTCGGCGTGCCGGCGT
TCTGAGTATGAGCAGTGCTACGTTAGCAAACGTACCCCCGTCTCGTTCCC
GCAATGGAGGATGGCGTGGTGAAGGAAACGGTGATCATGGACACTGGAGT
AGCGCCCGTAGACGAAGATGCCTCCGAGGGGATGAAGTTCCCGCGATACA
AGAAGGAATGCAAAACGAAGAGAATAACTGGGACACAGTGGCAGGACGGC
GACTCTGTTACTGCATCAAAGATTTGGGAAGAGCTTGGAAGGAAGGCAGA
GCCCAGTATTTTTGCCCGTTTCGGGGGGT

Coding sequence (CDS) from alignment at Scaffold_133:646600..647778+

>EsuBft1125_5a-0001 ID=EsuBft1125_5a-0001|Name=EsuBft1125_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=774bp|location=Sequence derived from alignment at Scaffold_133:646600..647778+ (Ectocarpus subulatus male Bft15b)
ATGGCGGCCATCGTCCACTTCAACCCGCAGACACACGTGGGGGGTGGCAG
CGTGCACGTGACGGAAACATGGATCTTTGCATCTGAGGACATGACACATG
ACTGCGATTTCCACCTCCACGGCTTGGCCAGGATGGCGGACCACTACCTG
CGTGGAGATGGGAGCGAAACAACGGCTGCCGCCCGGAAAGAAGGCAGGAC
GCCTCGGATTCACATCTTTACCGATGGGTGCGGGAAGCAGTACAAGGGAA
GGCGGAATGTCCGCTTTTTGGCCGACAGCGTCCGGCAAATTGGCTTCTTC
ATCGACCACGACTTCGCGGCCACATCTCACTTCAACGGTGGTGGGATCGG
CGGAGTCGCAAAGAACGCCATGAAGAGGAGGGAGAGATTTGGCAAGCGAA
TCATGGGGGCGGACGGGGTGGTCAGGTTTTTGCGAAGCTTCTTTCGGGAG
AAGGCAGGCAGCGAGGGGGAGGAGGGTATGCGGAGGTACTTCGCGAAGTG
GTCTCCGTACCCCATGCGGAGGGTGCACGTCGAGTTTATCGGTAAGAAGG
AGATATATCGGCCAAACTCGATCCTGGAAGGCGTAGAGGGTACACGAGAG
ATGTACCACTTTGCGGGAGCAAACACTCCCGAGTGGGATGGGTCCACCTC
AACCAAGGGACGCGAAGATGACTGTAAGCTCGTGCTGAAGAGCGAGGGCC
AGGGCCAGTTGTCGAGTCTAGAGACGAGCCGGTTGCGGGAAGTCAAGGTG
TTGGGTGCAGTAGCGAGCAGATAG