EsuBft1125_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1125_4a-0001
Unique Name	EsuBft1125_4a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_133	contig	Scaffold_133:649445..650887 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1125_4
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	Coil
Protein domains	SignalP-TM
Protein domains	SIGNAL_PEPTIDE_C_REGION
Protein domains	SIGNAL_PEPTIDE_N_REGION
Protein domains	SIGNAL_PEPTIDE_H_REGION
Protein domains	SIGNAL_PEPTIDE
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	144
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1125_4a	EsuBft1125_4a	Ectocarpus subulatus male Bft15b	gene	Scaffold_133 649445..650887 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1125_4a-0001-exon	EsuBft1125_4a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_133 649445..650887 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1125_4a-0001-cds	EsuBft1125_4a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_133 649445..650623 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1125_4a-0001-exon	agat-three_prime_utr-1174	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_133 650624..650887 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1125_4a-0001	EsuBft1125_4	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_133 649445..650623 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_133:649445..650887+
coding sequence from alignment at Scaffold_133:649445..650887+

spliced messenger RNA

>EsuBft1125_4a-0001 ID=EsuBft1125_4a-0001|Name=EsuBft1125_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1443bp|location=Sequence derived from alignment at Scaffold_133:649445..650887+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGTTACTCTTCCTGTCGCACAAGTTTTTCGTCGAAAGTCGCACTGC
AAGCGCGAGCTCGACAGCGCGAAAAGACCGCGTTCTCAGAGGAAGTCCGA
ACGCGGGGACACCAGACACACAGTTCCCGACGCAAGCAATACACGAGCAG
GGAGTTCCACTACGGTGCAGATCCGCGAGTTCGCGCCACACACAGAGGCC
AGACCACACACACACACAGACGCCAGCAGGTGCGATGAAGACAATTTTTT
TCGCCCTGCTGGCGGCTTTTCTCCCCCGCACCATCATGGCTACTGCTGCT
GCTGCTGCTGCTGCTGCCGTGTTTGCTGCTGCCGTGTCTGCTGCTGCTCT
TCGCCCCGAACCTGAAGTCGAAGTTACGGGGGTGTGCACACCCCAAGAGC
TCCTGCCCCAAGCCTACCGCCTCGGCCGTGACGCGGCCAACAAGGCGGGG
TTTGAGTCCAGTCTTCCCAAGGTGAACTGCGTTGTCAAGAGACGGGAATC
CCGCCGCACGTTCACGCCCCCGGGAGAAGCTCAAGCGCACGAGGTTGCCG
GAGATGGGGATTGTGCTTACCACGCCTTGCTGAAAGGTCTCCAGGCGAGT
CTTGGACAGACGAACATGCGTGTTCCACGAATGTCTGATGGTGTGAAGAG
TGCCCTCAAACACAGCATCATCTCCCACATCCTAGGACCATNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGATGACGACGGGCCGCT
GGCGCAATCGAAGCGCAAGCGGACGGCGAAGAGCGATGGGGGTAGCAAGA
AAAAACAAGGGCCAAGCGGAGAAAGCAAGGGGAAGTCAGGGGGAGGTGGC
GCGGCCGGCAGCACGGGGGGGGGCAACTACGACTCCGATGGGAGCATTGG
CGACGAGGGCACGGACTGGACTTATCTCGGATGCAGAGGCGCGCTCCCTT
CTCTCACAAGGAGTCAACAGTTGCTGCGGCGCAAGCTGAACAAGATCCCT
GAACCAGCGTACAAGGCGGCGCTCAAACGTACGAGCATCATGAAAGCGAA
GGCCGAAAAGGTGTGTTCTGTGTCCCGCGTTCCTCTTGTGATCATGTGTG
ATTGCGCATCCGTTAGGGCGTGCTTGTAGGAGTGTGTGCCTTTTGTCTTG
TGTCGGCGACTGATGTGTCGTGTTATGTTCCGTACCGGGTTGAACCTCTG
GTTGACGTGCTTTGTTTGGGGCAGTGACACATAATTGCAATGGCCGCTTG
TGATCTATTCTTTGTTTCCGCGGGTCTTTGCTGCGGTGTTGTGTAATGCA
ACTCATTTTCTCGTATCACGTACAAGGCCCCTTCGTCGTTGGTTGTACGC
AATGGTTCCGTCGTGGTCGACGCCGTTGTACTGTCGCTTGTCC

protein sequence of EsuBft1125_4a-0001

>EsuBft1125_4 ID=EsuBft1125_4|Name=EsuBft1125_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=392bp
MLLLFLSHKFFVESRTASASSTARKDRVLRGSPNAGTPDTQFPTQAIHEQ
GVPLRCRSASSRHTQRPDHTHTQTPAGAMKTIFFALLAAFLPRTIMATAA
AAAAAAVFAAAVSAAALRPEPEVEVTGVCTPQELLPQAYRLGRDAANKAG
FESSLPKVNCVVKRRESRRTFTPPGEAQAHEVAGDGDCAYHALLKGLQAS
LGQTNMRVPRMSDGVKSALKHSIISHILGPXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXEDDDGPLAQSKRKRTAKSDGGSKKKQGPSGESKGKSGGGG
AAGSTGGGNYDSDGSIGDEGTDWTYLGCRGALPSLTRSQQLLRRKLNKIP
EPAYKAALKRTSIMKAKAEKVCSVSRVPLVIMCDCASVRACL

mRNA from alignment at Scaffold_133:649445..650887+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1125_4a-0001 ID=EsuBft1125_4a-0001|Name=EsuBft1125_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1443bp|location=Sequence derived from alignment at Scaffold_133:649445..650887+ (Ectocarpus subulatus male Bft15b)
ATGTTGTTACTCTTCCTGTCGCACAAGTTTTTCGTCGAAAGTCGCACTGC
AAGCGCGAGCTCGACAGCGCGAAAAGACCGCGTTCTCAGAGGAAGTCCGA
ACGCGGGGACACCAGACACACAGTTCCCGACGCAAGCAATACACGAGCAG
GGAGTTCCACTACGGTGCAGATCCGCGAGTTCGCGCCACACACAGAGGCC
AGACCACACACACACACAGACGCCAGCAGGTGCGATGAAGACAATTTTTT
TCGCCCTGCTGGCGGCTTTTCTCCCCCGCACCATCATGGCTACTGCTGCT
GCTGCTGCTGCTGCTGCCGTGTTTGCTGCTGCCGTGTCTGCTGCTGCTCT
TCGCCCCGAACCTGAAGTCGAAGTTACGGGGGTGTGCACACCCCAAGAGC
TCCTGCCCCAAGCCTACCGCCTCGGCCGTGACGCGGCCAACAAGGCGGGG
TTTGAGTCCAGTCTTCCCAAGGTGAACTGCGTTGTCAAGAGACGGGAATC
CCGCCGCACGTTCACGCCCCCGGGAGAAGCTCAAGCGCACGAGGTTGCCG
GAGATGGGGATTGTGCTTACCACGCCTTGCTGAAAGGTCTCCAGGCGAGT
CTTGGACAGACGAACATGCGTGTTCCACGAATGTCTGATGGTGTGAAGAG
TGCCCTCAAACACAGCATCATCTCCCACATCCTAGGACCATNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGATGACGACGGGCCGCT
GGCGCAATCGAAGCGCAAGCGGACGGCGAAGAGCGATGGGGGTAGCAAGA
AAAAACAAGGGCCAAGCGGAGAAAGCAAGGGGAAGTCAGGGGGAGGTGGC
GCGGCCGGCAGCACGGGGGGGGGCAACTACGACTCCGATGGGAGCATTGG
CGACGAGGGCACGGACTGGACTTATCTCGGATGCAGAGGCGCGCTCCCTT
CTCTCACAAGGAGTCAACAGTTGCTGCGGCGCAAGCTGAACAAGATCCCT
GAACCAGCGTACAAGGCGGCGCTCAAACGTACGAGCATCATGAAAGCGAA
GGCCGAAAAGGTGTGTTCTGTGTCCCGCGTTCCTCTTGTGATCATGTGTG
ATTGCGCATCCGTTAGGGCGTGCTTGTAGGAGTGTGTGCCTTTTGTCTTG
TGTCGGCGACTGATGTGTCGTGTTATGTTCCGTACCGGGTTGAACCTCTG
GTTGACGTGCTTTGTTTGGGGCAGTGACACATAATTGCAATGGCCGCTTG
TGATCTATTCTTTGTTTCCGCGGGTCTTTGCTGCGGTGTTGTGTAATGCA
ACTCATTTTCTCGTATCACGTACAAGGCCCCTTCGTCGTTGGTTGTACGC
AATGGTTCCGTCGTGGTCGACGCCGTTGTACTGTCGCTTGTCC

Coding sequence (CDS) from alignment at Scaffold_133:649445..650887+

>EsuBft1125_4a-0001 ID=EsuBft1125_4a-0001|Name=EsuBft1125_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1179bp|location=Sequence derived from alignment at Scaffold_133:649445..650887+ (Ectocarpus subulatus male Bft15b)
ATGTTGTTACTCTTCCTGTCGCACAAGTTTTTCGTCGAAAGTCGCACTGC
AAGCGCGAGCTCGACAGCGCGAAAAGACCGCGTTCTCAGAGGAAGTCCGA
ACGCGGGGACACCAGACACACAGTTCCCGACGCAAGCAATACACGAGCAG
GGAGTTCCACTACGGTGCAGATCCGCGAGTTCGCGCCACACACAGAGGCC
AGACCACACACACACACAGACGCCAGCAGGTGCGATGAAGACAATTTTTT
TCGCCCTGCTGGCGGCTTTTCTCCCCCGCACCATCATGGCTACTGCTGCT
GCTGCTGCTGCTGCTGCCGTGTTTGCTGCTGCCGTGTCTGCTGCTGCTCT
TCGCCCCGAACCTGAAGTCGAAGTTACGGGGGTGTGCACACCCCAAGAGC
TCCTGCCCCAAGCCTACCGCCTCGGCCGTGACGCGGCCAACAAGGCGGGG
TTTGAGTCCAGTCTTCCCAAGGTGAACTGCGTTGTCAAGAGACGGGAATC
CCGCCGCACGTTCACGCCCCCGGGAGAAGCTCAAGCGCACGAGGTTGCCG
GAGATGGGGATTGTGCTTACCACGCCTTGCTGAAAGGTCTCCAGGCGAGT
CTTGGACAGACGAACATGCGTGTTCCACGAATGTCTGATGGTGTGAAGAG
TGCCCTCAAACACAGCATCATCTCCCACATCCTAGGACCATNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGATGACGACGGGCCGCT
GGCGCAATCGAAGCGCAAGCGGACGGCGAAGAGCGATGGGGGTAGCAAGA
AAAAACAAGGGCCAAGCGGAGAAAGCAAGGGGAAGTCAGGGGGAGGTGGC
GCGGCCGGCAGCACGGGGGGGGGCAACTACGACTCCGATGGGAGCATTGG
CGACGAGGGCACGGACTGGACTTATCTCGGATGCAGAGGCGCGCTCCCTT
CTCTCACAAGGAGTCAACAGTTGCTGCGGCGCAAGCTGAACAAGATCCCT
GAACCAGCGTACAAGGCGGCGCTCAAACGTACGAGCATCATGAAAGCGAA
GGCCGAAAAGGTGTGTTCTGTGTCCCGCGTTCCTCTTGTGATCATGTGTG
ATTGCGCATCCGTTAGGGCGTGCTTGTAG